Pepper yellow leaf curl Thailand virus
Basic Information
| Genus |
Begomovirus
|
| NCBI Assembly |
GCF_001502775.2 |
| Isolate |
Thailand |
| Release date |
2018/12/27 |
| Submitter |
Chiemsombat,P., Srikhamphung,B. |
| Host |
|
| Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCGGATGGCCGCGATTTTTTTTGAAGTGGTCCCCGCACGCGTGCTTGTCCAATCATAGCCACTCCTCAAAGCTTAGTTATTTAGGTGGTCCCCTATATAACTTAGTCCCCAAGTACCCACATCAAAACATGTGGGATCCTTTGCTAAACGAGTTTCCTGAAACCGTACATGGTTTTAGGTGTATGTTAGCAATTAAGTATTTGCAACTTGTAGAAAATACCTACTCCCCTGATACACTAGGCTACGACCTCATACGTGATCTCATTTTGGTGATTCGTGCTAGGGATTATGGCGAAGCGTCCCGCAGATATAGTCATTTCCACTCCCGTCTCGAAGGTTCGTCGCCGTCTGAACTTCGACAGCCCATATCTCAGCCGTGCTGCTGCCCCCACTGTCCTCGTCACAAACAAAAAGAGGTCATGGGCCAATCGGCCCATGTACAGAAAGCCCAGGATATACAGGATGTACAAAAGCCCTGATGTTCCTCGGGGCTGTGAAGGCCCATGTAAGGTCCAGTCGTACGAACAACGTCATGATGTAGTCCATGTAGGTAAGGTAATGTGTGTCTCTGATGTCACCCGTGGTAATGGGCTGACACATCGTGTTGGTAAGAGGTTCTGTATTAAGTCTGTCTATGTACTGGGCAAAATTTGGATGGACGAGAATATTAAAACCAAGAATCATACGAATACAGTCATGTTCTTTCTAGTTCGTGATAGGAGACCATATGGTACTCCACAGGATTTTGGTCAGGTGTTCAACATGTATGATAACGAGCCCAGTACCGCCACGGTGAAGAACGACAACAGAGATCGATATCAAGTCCTTCGTCGTTTTCAGGCAACTGTGACAGGTGGTCAGTATGCAAGCAAGGAACAAGCCATAGTTAGGAAATTCATGAAGGTGAACAACCATGTGACATACAACCATCAAGAAGCTGCGAAGTATGATAATCATACGGAGAATGCCCTTTTATTGTACATGGCATGTACTCATGCTAGTAATCCAGTGTATGCTACCTTGAAGATCAGAATCTATTTCTATGATTCGGTTCAAAATTAATAAACATTGAATTTTATTATATGTGAAACATGAGCATCAATTGTGCCCTCGAACACATTGTACAGAACATGTGTAATTGCTCTAATTACATTGTTGATACTAATCACGCCTAAATGGTCTAAATACTTCATACATTGATATCTAAATAGTCTTAAGAAACGCCAGGTCTGAGGACGTAAACGAGTCCAGATTTGGCAGATTAGATAGCATTGGTGTAGTTCCAACGCTCTCCTCAGGTTGTAGTTGAACTGGATCTGCACGGTGATTATGTCGTGGCTCATCATGAATGGCCTCTCGTGGTGTTGTGTTACTTTGAAATAGAGGGGATTGTTGACCGTCCAGATATATACGCCATTCTCTGCCTGAGCTGCAGTGATGCGTTCCCCGGTGCGTGAATCCATGGTTGTGACAACCCAGAGCTACGAAATATGAACACCCACAAGGGAGATCAACGCGTCTCCTTCTAGTTGTTTTCTTGGCGATTCGGTGTCGCACCTTGATAGGTACCTGAGTAGAGTGGGCCTTGGAGGGTGACGAAGATTGCATTCTTTACAGCCCAATTTTTAAGTGCGGTATTCTTGTCCTCTTGCAAGAACTCTTTATAGCTGGAATGTGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGTTTACCGTACTTGGTGTTGCTTTGCCAGTCTCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGATAATGCGGGTCGACGTCATCAATGACGTTATACCAAGCAGCATTACTGTACACTTTTGGACTTAAATCTAAATGACCGCATAAGTAATTATGTGGTCCTAATGTCCTGGCCCACATTGTCTTCCCCGTCCTGCTATCACCCTCTATCACTATACTTATCGGTCTTAATGGCCGCGCAGCGGCACTAACAACATTCGTAGCAACCCACTCCTGAAGTTCTTCCGGAACTAGGTCAAAAGAAGAAGAACAGAAAGGAGAAATGTACATTTCTATCGGAGGAGGAAAAATCCTATCTAAATTGCTATTTAAGTGATGAAATTGTAATAAATAATCTTTCGGGGCCTTTTCCTTTAATATTGTGAGGGCCGATTCTTTAGATCCCGAATTGAGAGCCTCAGCATATGCGTCGTTGGCAGATTGGCAACCTCCTCTCGCCGATCTTCCATCGATCTGGAAAACTCCGTGATCAAGAACGTCCCCTTCCTTCTCCATATATGCTTTGACATCTGTTGAGCTTTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGATGTGAGGTCGAAGAATCGTTGGTTTTTGCATTGGAATTTACCTTCGAATTGGATGAGGACATGCAAGTGAGGAGTCCCATCTTCGTGCAATTCCCTGCAAATCCGGATGAAGCGTTTATTGGTTGGTGTTTCTAGGGCTTGGATTTGGGAAAGTGCCTCTTCTTTGGTGAGAGAGCACCGTGGATATGTGAGGAAATAGTTTTTGGCATTTATTCGGAATTTATTTGGAGGAGCCATTGACTGGTCAATCAGTGTCTCTCAAACTGTGCTATTATATTGGTGTCTGGAGTCTCATATATAGGTGAGACCCTAAATGGCATTCTTGTAATTAACAAAATTAATTTGAAATTCAAATTTCAAAAGCGGCCATCCGTATAATATT
Gene Information
|
NCBI Accession
|
YP_009216582.1
|
|
Location
|
130-480 |
|
Protein Name
|
AV2 |
|
Coding Region
|
ATGTGGGATCCTTTGCTAAACGAGTTTCCTGAAACCGTACATGGTTTTAGGTGTATGTTAGCAATTAAGTATTTGCAACTTGTAGAAAATACCTACTCCCCTGATACACTAGGCTACGACCTCATACGTGATCTCATTTTGGTGATTCGTGCTAGGGATTATGGCGAAGCGTCCCGCAGATATAGTCATTTCCACTCCCGTCTCGAAGGTTCGTCGCCGTCTGAACTTCGACAGCCCATATCTCAGCCGTGCTGCTGCCCCCACTGTCCTCGTCACAAACAAAAAGAGGTCATGGGCCAATCGGCCCATGTACAGAAAGCCCAGGATATACAGGATGTACAAAAGCCCTGA |
|
Protein Sequence
|
MWDPLLNEFPETVHGFRCMLAIKYLQLVENTYSPDTLGYDLIRDLILVIRARDYGEASRRYSHFHSRLEGSSPSELRQPISQPCCCPHCPRHKQKEVMGQSAHVQKAQDIQDVQKP |
|
NCBI Accession
|
YP_009216583.1
|
|
Location
|
290-1063 |
|
Protein Name
|
AV1 |
|
Coding Region
|
ATGGCGAAGCGTCCCGCAGATATAGTCATTTCCACTCCCGTCTCGAAGGTTCGTCGCCGTCTGAACTTCGACAGCCCATATCTCAGCCGTGCTGCTGCCCCCACTGTCCTCGTCACAAACAAAAAGAGGTCATGGGCCAATCGGCCCATGTACAGAAAGCCCAGGATATACAGGATGTACAAAAGCCCTGATGTTCCTCGGGGCTGTGAAGGCCCATGTAAGGTCCAGTCGTACGAACAACGTCATGATGTAGTCCATGTAGGTAAGGTAATGTGTGTCTCTGATGTCACCCGTGGTAATGGGCTGACACATCGTGTTGGTAAGAGGTTCTGTATTAAGTCTGTCTATGTACTGGGCAAAATTTGGATGGACGAGAATATTAAAACCAAGAATCATACGAATACAGTCATGTTCTTTCTAGTTCGTGATAGGAGACCATATGGTACTCCACAGGATTTTGGTCAGGTGTTCAACATGTATGATAACGAGCCCAGTACCGCCACGGTGAAGAACGACAACAGAGATCGATATCAAGTCCTTCGTCGTTTTCAGGCAACTGTGACAGGTGGTCAGTATGCAAGCAAGGAACAAGCCATAGTTAGGAAATTCATGAAGGTGAACAACCATGTGACATACAACCATCAAGAAGCTGCGAAGTATGATAATCATACGGAGAATGCCCTTTTATTGTACATGGCATGTACTCATGCTAGTAATCCAGTGTATGCTACCTTGAAGATCAGAATCTATTTCTATGATTCGGTTCAAAATTAA |
|
Protein Sequence
|
MAKRPADIVISTPVSKVRRRLNFDSPYLSRAAAPTVLVTNKKRSWANRPMYRKPRIYRMYKSPDVPRGCEGPCKVQSYEQRHDVVHVGKVMCVSDVTRGNGLTHRVGKRFCIKSVYVLGKIWMDENIKTKNHTNTVMFFLVRDRRPYGTPQDFGQVFNMYDNEPSTATVKNDNRDRYQVLRRFQATVTGGQYASKEQAIVRKFMKVNNHVTYNHQEAAKYDNHTENALLLYMACTHASNPVYATLKIRIYFYDSVQN |
|
NCBI Accession
|
YP_009216584.1
|
|
Location
|
1060-1464 |
|
Protein Name
|
AC3 |
|
Coding Region
|
ATGGATTCACGCACCGGGGAACGCATCACTGCAGCTCAGGCAGAGAATGGCGTATATATCTGGACGGTCAACAATCCCCTCTATTTCAAAGTAACACAACACCACGAGAGGCCATTCATGATGAGCCACGACATAATCACCGTGCAGATCCAGTTCAACTACAACCTGAGGAGAGCGTTGGAACTACACCAATGCTATCTAATCTGCCAAATCTGGACTCGTTTACGTCCTCAGACCTGGCGTTTCTTAAGACTATTTAGATATCAATGTATGAAGTATTTAGACCATTTAGGCGTGATTAGTATCAACAATGTAATTAGAGCAATTACACATGTTCTGTACAATGTGTTCGAGGGCACAATTGATGCTCATGTTTCACATATAATAAAATTCAATGTTTATTAA |
|
Protein Sequence
|
MDSRTGERITAAQAENGVYIWTVNNPLYFKVTQHHERPFMMSHDIITVQIQFNYNLRRALELHQCYLICQIWTRLRPQTWRFLRLFRYQCMKYLDHLGVISINNVIRAITHVLYNVFEGTIDAHVSHIIKFNVY |
|
NCBI Accession
|
YP_009216585.1
|
|
Location
|
1205-1609 |
|
Protein Name
|
AC2 |
|
Coding Region
|
ATGCAATCTTCGTCACCCTCCAAGGCCCACTCTACTCAGGTACCTATCAAGGTGCGACACCGAATCGCCAAGAAAACAACTAGAAGGAGACGCGTTGATCTCCCTTGTGGGTGTTCATATTTCGTAGCTCTGGGTTGTCACAACCATGGATTCACGCACCGGGGAACGCATCACTGCAGCTCAGGCAGAGAATGGCGTATATATCTGGACGGTCAACAATCCCCTCTATTTCAAAGTAACACAACACCACGAGAGGCCATTCATGATGAGCCACGACATAATCACCGTGCAGATCCAGTTCAACTACAACCTGAGGAGAGCGTTGGAACTACACCAATGCTATCTAATCTGCCAAATCTGGACTCGTTTACGTCCTCAGACCTGGCGTTTCTTAAGACTATTTAG |
|
Protein Sequence
|
MQSSSPSKAHSTQVPIKVRHRIAKKTTRRRRVDLPCGCSYFVALGCHNHGFTHRGTHHCSSGREWRIYLDGQQSPLFQSNTTPREAIHDEPRHNHRADPVQLQPEESVGTTPMLSNLPNLDSFTSSDLAFLKTI |
|
NCBI Accession
|
YP_009216586.1
|
|
Location
|
1527-2597 |
|
Protein Name
|
AC1 |
|
Coding Region
|
ATGGCTCCTCCAAATAAATTCCGAATAAATGCCAAAAACTATTTCCTCACATATCCACGGTGCTCTCTCACCAAAGAAGAGGCACTTTCCCAAATCCAAGCCCTAGAAACACCAACCAATAAACGCTTCATCCGGATTTGCAGGGAATTGCACGAAGATGGGACTCCTCACTTGCATGTCCTCATCCAATTCGAAGGTAAATTCCAATGCAAAAACCAACGATTCTTCGACCTCACATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAAAGCTCAACAGATGTCAAAGCATATATGGAGAAGGAAGGGGACGTTCTTGATCACGGAGTTTTCCAGATCGATGGAAGATCGGCGAGAGGAGGTTGCCAATCTGCCAACGACGCATATGCTGAGGCTCTCAATTCGGGATCTAAAGAATCGGCCCTCACAATATTAAAGGAAAAGGCCCCGAAAGATTATTTATTACAATTTCATCACTTAAATAGCAATTTAGATAGGATTTTTCCTCCTCCGATAGAAATGTACATTTCTCCTTTCTGTTCTTCTTCTTTTGACCTAGTTCCGGAAGAACTTCAGGAGTGGGTTGCTACGAATGTTGTTAGTGCCGCTGCGCGGCCATTAAGACCGATAAGTATAGTGATAGAGGGTGATAGCAGGACGGGGAAGACAATGTGGGCCAGGACATTAGGACCACATAATTACTTATGCGGTCATTTAGATTTAAGTCCAAAAGTGTACAGTAATGCTGCTTGGTATAACGTCATTGATGACGTCGACCCGCATTATCTAAAGCACTTTAAAGAATTCATGGGGGCCCAAAGAGACTGGCAAAGCAACACCAAGTACGGTAAACCAGTTCAAATTAAAGGCGGAATTCCCACTATCTTCCTCTGCAATCCAGGACCACATTCCAGCTATAAAGAGTTCTTGCAAGAGGACAAGAATACCGCACTTAAAAATTGGGCTGTAAAGAATGCAATCTTCGTCACCCTCCAAGGCCCACTCTACTCAGGTACCTATCAAGGTGCGACACCGAATCGCCAAGAAAACAACTAG |
|
Protein Sequence
|
MAPPNKFRINAKNYFLTYPRCSLTKEEALSQIQALETPTNKRFIRICRELHEDGTPHLHVLIQFEGKFQCKNQRFFDLTSPTRSAHFHPNIQGAKSSTDVKAYMEKEGDVLDHGVFQIDGRSARGGCQSANDAYAEALNSGSKESALTILKEKAPKDYLLQFHHLNSNLDRIFPPPIEMYISPFCSSSFDLVPEELQEWVATNVVSAAARPLRPISIVIEGDSRTGKTMWARTLGPHNYLCGHLDLSPKVYSNAAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPTIFLCNPGPHSSYKEFLQEDKNTALKNWAVKNAIFVTLQGPLYSGTYQGATPNRQENN |
|
NCBI Accession
|
YP_009216587.1
|
|
Location
|
2147-2440 |
|
Protein Name
|
AC4 |
|
Coding Region
|
ATGGGACTCCTCACTTGCATGTCCTCATCCAATTCGAAGGTAAATTCCAATGCAAAAACCAACGATTCTTCGACCTCACATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAAAGCTCAACAGATGTCAAAGCATATATGGAGAAGGAAGGGGACGTTCTTGATCACGGAGTTTTCCAGATCGATGGAAGATCGGCGAGAGGAGGTTGCCAATCTGCCAACGACGCATATGCTGAGGCTCTCAATTCGGGATCTAAAGAATCGGCCCTCACAATATTAA |
|
Protein Sequence
|
MGLLTCMSSSNSKVNSNAKTNDSSTSHPQPGQHISIRTFRELKAQQMSKHIWRRKGTFLITEFSRSMEDRREEVANLPTTHMLRLSIRDLKNRPSQY |