Pepper leaf curl Lahore virus


Basic Information

Genus Begomovirus
NCBI Assembly GCF_000894415.1
Isolate Pakistan:Punjab, Lahore
Release date 2015/2/22
Submitter Tahir,M., Haider,M.S., Briddon,R.W.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization


JBrowse


Genome

NC_016984
ACCGGATGGCCGCGATTTTTTTAAGTGGGCCCCACAACGCACGTGCTGACAAAGACATGTGGACCAATTAAAACCGCCCCTCATATCTTAATTGTTTCATGGTCCCCCCTATAAACTAGGGCTCCAAGTAGTGCACTCTTACCAATGTGGGATCCATTAGTAAACGAGTTTCCTGAAACCGTTCACGGTTTTAGGTGTATGTTAGCAGTTAAATATCTGCAGCTAGTAGAAAATACATATTCCCCAGACACTCTGGGCTACGATTTAATTAGGGATTTAATTTCAGTTATTAGGGCTAGAAATTATGTCGAAGCGTCCAGCAGATATAATCATTTCCACGCCCGCTTCGAAGGTACGCCGCCGTCTCAACCTCGACAGCCCATATGCCAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACAAAGGCAAGAGCATGGGCCAACAGGCCCATGAATCGGAAGCCCAGGATGTACAGGATGTACAGGAGCCCAGATGTTCCTAGGGGGTGTGAAGGCCCATGTAAGGTCCAGTCTTTTGAGTCTAGGCACGATGTAGTTCATATAGGGAAGGTTATGTGTATTAGTGATGTTACCCGTGGTACTGGTTTAACCCATAGAGTAGGTAGGCGTTTCTGTGTTAAGTCTGTGTATGTATTAGGGAAGATATGGATGGATGAGAATATCAAGACCAAGAATCACACGAATAGTGTGATGTTCTTTCTTGTCCGTGATCGTCGTCCTGTTGATAAACCACAAGATTTTGGAGAGGTGTTCAACATGTTTGACAACGAGCCTAGCACTGCAACCGTGAAGAATATGCATAGAGATCGTTATCAGGTCTTGAGGAAATGGCACGCAACGGTTACTGGTGGCCAGTACGCTTCGAAGGAACAGGCATTAGTTAAGAAGTTCGTTAGGGTTAACAATTATGTTGTGTATAACCAGCAGGAGGCTGGAAAATATGAAAATCACACAGAGAATGCTCTGATGTTGTACATGGCATGTACTCATGCCTCTAACCCTGTGTATGCGACGTTGAAGATACGGATCTATTTCTATGATTCAGTATCGAATTAATAAAGATTGAATTTTATTATATTTGAACTTTGTACATGAATTGTTTGTGCTAATACATGCCATAATACATGGTCGACAGCTCTAATTACATTGTTTATACTAATTACAGCTAAATTATTTAAAAACAGCAACACTTGGGTCCTAAATACCCTTAAGAAATGACCAGTCTGAGGCTGTAAGGTCGTCCAGATTCGGAAGGTTAGAAAACATTTGTGTATCCCCAACGCTTTCCTCAGGTTGTGATTGAACTGTATCTGCACGGTGATGATGTCTCGGTTCCTCAGGAATGGCCTGTTGTGGTGCTCGGTTATCTTGAAATATAGGGGATTTGTTATCTCCCAGATAAACACGCCATTCTCTGCCTGAGCTGCAGTGATGGGTTCCCCTGTGCGTGAATCCATAGCCGTGGCAGCGTAATGCGATGAAATATGAACAGCCGCAATCTAGGTCAACGCGACGACGCCTGGTCCCCTTCTTGGCTAGCCTGTGTTGCACTTTGATTGGAACCTGAGTAGAGTGGGCCTTCGAGGGTGATGAAGGTCGCATTCTTTAAAGCCCAATTTCTTAGTGCGCTATTTTTCTCTTCATCCAAGAACTCTTTATAGCTAGAATTGGGTCCTGGATTGCAGAGGAAGATAGCGGGAATTCCACCTTTAATTTGAACTGGCTTTCCGTATTTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAATTCCTTAAAGTGCTTTAGATAATGCGGATCAACGTCATTAATGACGTTATACCAGGCGTCGTTATTGTAGACCTTTGGGCTAAGGTCGAGATGTCCACACAAATAGTTGTGTGGTCCCAGGGACCTGGCCCACATTGTCTTCCCCGTTCTACTCTCACCCTCCAACACTATACTCATGGGTCTTAAAGGCCGCGCAGCGGCACTGACAACGTTCTGTGCAGCCCACTCCTCAAGTTCTGTCGGAACTTGATCAAAAGAAGAAGAACAACAAGGAGAAACATAAACCTCCGCTGGAGGTTGAAAAATCCTATCTAAATTAGATTTTAAATTATGATATTGAAAAATAAAATCTTTGAGGAGTTTCTCCCTTATTATTGCTAAAGCTGCTTCAGCCGAACCCGCATTTAAGGCCTCTGCTGCAGCATCATTAGCTGTCTGTTGACCTCCTCGACCATATCTTCCATCGATCTGAAACTGACCCCAGTCGATGTAATCACTGTCCTTCTCGATGTAGGACTTGACATCAGAGCTGGACTTAGCTCCCTGGAAGTTTGGGTGGAATTGGGAGGCGTTATTAGGGTGAGTGACATCGAAATGTCTGGGGTTTCTGAACTTGGATTTACCTTTGAATTGGATGAGGGCGTGGATATGCAGAGACCCATCCTGGTGTTTCTCTTGTGCCACTCTGATAAATAGTTTATCAGATGGGCAATTTATCGACCGAAGAATGTCGAGCATTTGTTCTTTGGGTATTGGGCATTTGGGGTAAGTAAGGAAGATATTTTTTGCATTAACACAAAACGACTGCGTACGAGTCATATTGAATTGGGGACACTCAAAACTCTGAGGAATGGGGGACACTGGGGACGCTTTTATATGGTGTCCCCAAATTGCAAATTGGTAATTTGCACAACTTTAATTCAAATTCCCGAGAATCGCGGCCATCCGTATAATATT

Gene Information

NCBI Accession YP_005352656.1
Location 145-501
Gene Name AV1
Protein Name pre-coat protein
Coding Region ATGTGGGATCCATTAGTAAACGAGTTTCCTGAAACCGTTCACGGTTTTAGGTGTATGTTAGCAGTTAAATATCTGCAGCTAGTAGAAAATACATATTCCCCAGACACTCTGGGCTACGATTTAATTAGGGATTTAATTTCAGTTATTAGGGCTAGAAATTATGTCGAAGCGTCCAGCAGATATAATCATTTCCACGCCCGCTTCGAAGGTACGCCGCCGTCTCAACCTCGACAGCCCATATGCCAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACAAAGGCAAGAGCATGGGCCAACAGGCCCATGAATCGGAAGCCCAGGATGTACAGGATGTACAGGAGCCCAGATGTTCCTAG
Protein Sequence MWDPLVNEFPETVHGFRCMLAVKYLQLVENTYSPDTLGYDLIRDLISVIRARNYVEASSRYNHFHARFEGTPPSQPRQPICQPCCCPHCPRHKGKSMGQQAHESEAQDVQDVQEPRCS

NCBI Accession YP_005352657.1
Location 305-1075
Gene Name CP
Protein Name coat protein
Coding Region ATGTCGAAGCGTCCAGCAGATATAATCATTTCCACGCCCGCTTCGAAGGTACGCCGCCGTCTCAACCTCGACAGCCCATATGCCAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACAAAGGCAAGAGCATGGGCCAACAGGCCCATGAATCGGAAGCCCAGGATGTACAGGATGTACAGGAGCCCAGATGTTCCTAGGGGGTGTGAAGGCCCATGTAAGGTCCAGTCTTTTGAGTCTAGGCACGATGTAGTTCATATAGGGAAGGTTATGTGTATTAGTGATGTTACCCGTGGTACTGGTTTAACCCATAGAGTAGGTAGGCGTTTCTGTGTTAAGTCTGTGTATGTATTAGGGAAGATATGGATGGATGAGAATATCAAGACCAAGAATCACACGAATAGTGTGATGTTCTTTCTTGTCCGTGATCGTCGTCCTGTTGATAAACCACAAGATTTTGGAGAGGTGTTCAACATGTTTGACAACGAGCCTAGCACTGCAACCGTGAAGAATATGCATAGAGATCGTTATCAGGTCTTGAGGAAATGGCACGCAACGGTTACTGGTGGCCAGTACGCTTCGAAGGAACAGGCATTAGTTAAGAAGTTCGTTAGGGTTAACAATTATGTTGTGTATAACCAGCAGGAGGCTGGAAAATATGAAAATCACACAGAGAATGCTCTGATGTTGTACATGGCATGTACTCATGCCTCTAACCCTGTGTATGCGACGTTGAAGATACGGATCTATTTCTATGATTCAGTATCGAATTAA
Protein Sequence MSKRPADIIISTPASKVRRRLNLDSPYASRAAAPIVRVTKARAWANRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGTGLTHRVGRRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEPSTATVKNMHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENHTENALMLYMACTHASNPVYATLKIRIYFYDSVSN

NCBI Accession YP_005352658.1
Location 1072-1476
Gene Name REn
Protein Name replication enhancer protein
Coding Region ATGGATTCACGCACAGGGGAACCCATCACTGCAGCTCAGGCAGAGAATGGCGTGTTTATCTGGGAGATAACAAATCCCCTATATTTCAAGATAACCGAGCACCACAACAGGCCATTCCTGAGGAACCGAGACATCATCACCGTGCAGATACAGTTCAATCACAACCTGAGGAAAGCGTTGGGGATACACAAATGTTTTCTAACCTTCCGAATCTGGACGACCTTACAGCCTCAGACTGGTCATTTCTTAAGGGTATTTAGGACCCAAGTGTTGCTGTTTTTAAATAATTTAGCTGTAATTAGTATAAACAATGTAATTAGAGCTGTCGACCATGTATTATGGCATGTATTAGCACAAACAATTCATGTACAAAGTTCAAATATAATAAAATTCAATCTTTATTAA
Protein Sequence MDSRTGEPITAAQAENGVFIWEITNPLYFKITEHHNRPFLRNRDIITVQIQFNHNLRKALGIHKCFLTFRIWTTLQPQTGHFLRVFRTQVLLFLNNLAVISINNVIRAVDHVLWHVLAQTIHVQSSNIIKFNLY

NCBI Accession YP_005352659.1
Location 1217-1621
Gene Name TrAP
Protein Name transcriptional activator protein
Coding Region ATGCGACCTTCATCACCCTCGAAGGCCCACTCTACTCAGGTTCCAATCAAAGTGCAACACAGGCTAGCCAAGAAGGGGACCAGGCGTCGTCGCGTTGACCTAGATTGCGGCTGTTCATATTTCATCGCATTACGCTGCCACGGCTATGGATTCACGCACAGGGGAACCCATCACTGCAGCTCAGGCAGAGAATGGCGTGTTTATCTGGGAGATAACAAATCCCCTATATTTCAAGATAACCGAGCACCACAACAGGCCATTCCTGAGGAACCGAGACATCATCACCGTGCAGATACAGTTCAATCACAACCTGAGGAAAGCGTTGGGGATACACAAATGTTTTCTAACCTTCCGAATCTGGACGACCTTACAGCCTCAGACTGGTCATTTCTTAAGGGTATTTAG
Protein Sequence MRPSSPSKAHSTQVPIKVQHRLAKKGTRRRRVDLDCGCSYFIALRCHGYGFTHRGTHHCSSGREWRVYLGDNKSPIFQDNRAPQQAIPEEPRHHHRADTVQSQPEESVGDTQMFSNLPNLDDLTASDWSFLKGI

NCBI Accession YP_005352660.1
Location 1524-2609
Gene Name AC1
Protein Name replication-associated protein
Coding Region ATGACTCGTACGCAGTCGTTTTGTGTTAATGCAAAAAATATCTTCCTTACTTACCCCAAATGCCCAATACCCAAAGAACAAATGCTCGACATTCTTCGGTCGATAAATTGCCCATCTGATAAACTATTTATCAGAGTGGCACAAGAGAAACACCAGGATGGGTCTCTGCATATCCACGCCCTCATCCAATTCAAAGGTAAATCCAAGTTCAGAAACCCCAGACATTTCGATGTCACTCACCCTAATAACGCCTCCCAATTCCACCCAAACTTCCAGGGAGCTAAGTCCAGCTCTGATGTCAAGTCCTACATCGAGAAGGACAGTGATTACATCGACTGGGGTCAGTTTCAGATCGATGGAAGATATGGTCGAGGAGGTCAACAGACAGCTAATGATGCTGCAGCAGAGGCCTTAAATGCGGGTTCGGCTGAAGCAGCTTTAGCAATAATAAGGGAGAAACTCCTCAAAGATTTTATTTTTCAATATCATAATTTAAAATCTAATTTAGATAGGATTTTTCAACCTCCAGCGGAGGTTTATGTTTCTCCTTGTTGTTCTTCTTCTTTTGATCAAGTTCCGACAGAACTTGAGGAGTGGGCTGCACAGAACGTTGTCAGTGCCGCTGCGCGGCCTTTAAGACCCATGAGTATAGTGTTGGAGGGTGAGAGTAGAACGGGGAAGACAATGTGGGCCAGGTCCCTGGGACCACACAACTATTTGTGTGGACATCTCGACCTTAGCCCAAAGGTCTACAATAACGACGCCTGGTATAACGTCATTAATGACGTTGATCCGCATTATCTAAAGCACTTTAAGGAATTCATGGGGGCCCAAAGGGACTGGCAATCCAACACAAAATACGGAAAGCCAGTTCAAATTAAAGGTGGAATTCCCGCTATCTTCCTCTGCAATCCAGGACCCAATTCTAGCTATAAAGAGTTCTTGGATGAAGAGAAAAATAGCGCACTAAGAAATTGGGCTTTAAAGAATGCGACCTTCATCACCCTCGAAGGCCCACTCTACTCAGGTTCCAATCAAAGTGCAACACAGGCTAGCCAAGAAGGGGACCAGGCGTCGTCGCGTTGA
Protein Sequence MTRTQSFCVNAKNIFLTYPKCPIPKEQMLDILRSINCPSDKLFIRVAQEKHQDGSLHIHALIQFKGKSKFRNPRHFDVTHPNNASQFHPNFQGAKSSSDVKSYIEKDSDYIDWGQFQIDGRYGRGGQQTANDAAAEALNAGSAEAALAIIREKLLKDFIFQYHNLKSNLDRIFQPPAEVYVSPCCSSSFDQVPTELEEWAAQNVVSAAARPLRPMSIVLEGESRTGKTMWARSLGPHNYLCGHLDLSPKVYNNDAWYNVINDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPAIFLCNPGPNSSYKEFLDEEKNSALRNWALKNATFITLEGPLYSGSNQSATQASQEGDQASSR

NCBI Accession YP_005352661.1
Location 2195-2452
Gene Name AC4
Protein Name AC4 protein
Coding Region ATGGGTCTCTGCATATCCACGCCCTCATCCAATTCAAAGGTAAATCCAAGTTCAGAAACCCCAGACATTTCGATGTCACTCACCCTAATAACGCCTCCCAATTCCACCCAAACTTCCAGGGAGCTAAGTCCAGCTCTGATGTCAAGTCCTACATCGAGAAGGACAGTGATTACATCGACTGGGGTCAGTTTCAGATCGATGGAAGATATGGTCGAGGAGGTCAACAGACAGCTAATGATGCTGCAGCAGAGGCCTTAA
Protein Sequence MGLCISTPSSNSKVNPSSETPDISMSLTLITPPNSTQTSRELSPALMSSPTSRRTVITSTGVSFRSMEDMVEEVNRQLMMLQQRP