Pedilanthus leaf curl virus


Basic Information

Genus Begomovirus
NCBI Assembly GCF_000868385.1
Isolate Pakistan: Rahim Yar Khan
Release date 2015/2/13
Submitter Tsai,W.-S., Green,S.K., Behjatnia,S.A.A., Rezaian,A., Iram,S., Mansoor
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization


JBrowse


Genome

NC_008299
ACCGGATGGCCGCGCTTTTTTTATGGCCCCCACAGAGCACTAACTGACAATGACATGTGGACCAATGAGAATCGTTCCTCGTAGCCTAGTTATTTCATGGTCCCCCCTATAAACTTAGTGCGCAAGTTGTGTTTCACATTCATTATGTGGGATCCGTTGTTGAACGAGTTTCCCGAAACCGTTCACGGTTTTAGGTGTATGCTAGCAGTTAAATATTTGCAGTTAGTAGAAAATGCGTATTCCCCAGATACTTTGGGATACGATTTAATTAGGGATTTAATTTCAGTAATAAGGGCTAGGAATTATGTCGAAGCGACCAGCAGATATAATCATTTCCACGCCCGCCTCGAAGGTACGTCGCCGTCTCAATTTCGACAGCCCATATGCGAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACAAAGGCAAGGGCATGGGCGAACAGGCCCATGAACCGAAAGCCCAGGATGTACAGGATGTACAGAAGCCCAGATGTTCCTAGAGGATGTGAAGGCCCGTGTAAGGTCCAGTCATTTGAGTCCAGACATGATATCCAGCACATTGGTAAAGTCATGTGTGTTAGTGATGTTACTCGTGGTATTGGGCTGACCCACAGGGTAGGCAAGAGATTCTGTGTCAAGTCCGTTTATGTTTTGGGCAAGATTTGGATGGATGAGAACATCAAGACCAAGAATCATACGAATAGTGTGATGTTTTTTCTAGTTAGAGACCGTAGACCAGTTGATAAACCTCAGGATTTTGGAGAGGTTTTTAATATGTTTGATAATGAGCCCAGCACGGCGACTGTGAAGAATGTTCATCGTGATAGATACCAGGTATTAAGGAAGTGGTATGCAACTGTCACTGGTGGACAATATGCATCGAAGGAGCAGGCTCTCGTGAAGAAGTTTATTAGGGTTAATAATTATGTTGTGTACAACCAGCAAGAGGCTGGGAAGTATGAGAATCATACTGAGAATGCGTTAATGTTGTATATGGCGTGTACTCACGCCTCTAACCCTGTGTATGCTACATTGAAGATACGGATCTACTTCTATGATTCAGTATCGAATTAATAAATATTGAATTTTATTGAAGATGATTGTTTTACATATACAATATGCTCTAATACATTCCATAATACATGATCAACTGCTCTAATTACATTGTTAATACTGATAACTCCTAGATTATCTAAATACTTAAGCACTTGTGTCTTAAAGACCCTTAAGAAACGACCAGTCGGAGGCTGTGAGGTCATCCAGATTCGGAAGGCTAGGAAACATTTGTGTATTCCCAACGCTTTCCTCAGGTTGTGATTGAACTGTATCTGGACAGTGATGATGTCTTGGTTCATGAGGAATGGCCTGTTGTGGTGCTCTGTTATCTTGAAATAGAGGGGATTTTGAACCTCCCAGATAAACACGCCATTCTGTGCTTGAGCTGCAGTGATGAGTTCCCCTGTGCGTGAATCCATGGTCGTGGCAGGCTAAGGCTATGAAGTATGAACACCCACACGGGAGATCAACACGACGACGCCTGGTCCCTTTCTTGGCTAGCCTGTGCTGCACTTTGATTGGAACCTGAGTAGAGTGGGCCTTCGAGGGTGACGAAGATCGCATTCTTTAATGCCCAATTTTTGAGTGCAGAATTCTTCTCCTCATCCAAAAACTCTTTATAGCTTGAGTTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTTCCGTACTTTGTATTTGATTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGGTAGTGGGGATCGACGTCATCAATGACGTTGTACCAGGCCTCGTTGCTGTAAACCTTTGGACTAAGGTCTAGATGACCACACAGATAATTGTGTGGACCCAGTGACCTGGCCCACATTGTCTTCCCCGTACGACTATCACCCTCTATGACAATACTTTTAGGTCTCAATGGCCGCGCAGCGGCACCCACGACGTTCTCAGCAGCCCATTCTTCAAGTTCTTCCGGAACTTGATCAAAAGAAGAAGAAGAAAAAGGAGAAACATAAACCTCCATGGGAGGTGTAAAAATCCTATCTAAATTAGCATTTAAATTATGAAATTGAAGTACATAATCTTTTGGTGCTAATTCTTTAATTACTCTAAGAGCTTCTGACTTACTGCCTGCGTTAAGCGCTGCGGCGTAAGCGTCGTTGGCTGACTGTTGTCCCCCTCTTGCAGATCTTCCATCGATCTGAAACTCTCCCCAGTCGAGGGTGTCTCCGTCCTTCTCCAGATAGGACTTGACGTCTGAGCTTGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGATACCAGGTCGAAGAATCGCTGATTTTGGCACTTGTATTTTCCCTCGAACTGGATGAGCACGTGAAGATGAGGTTCCCCATTTTCATGAAACTCTCTGCAGATTTTAATGTATTTTTTGTTTACTGGGGTTTGTAGGTTTTGGAATTGGGAAAGTGCTTCCTCTTTGGTGAGAGAGCACTTGGGATAAGTGAGGAAATAATTTTTCGAATTAATAAGGAAACGCTTTGGGGGCATGTTGACCAAGTGAGAGGACCCGATTGACCGCTCTTGCAACTCTCCCCTGTATATCGGGTCTCAATATATAGTGAGACCCAAATGGCATTATTGTAATTTGGATAACAGATTCAAAATTCTGACGCTCCAAAAAGCGGCCATCCGTATAATATT

Gene Information

NCBI Accession YP_717914.1
Location 97-501
Protein Name V2
Coding Region ATGGTCCCCCCTATAAACTTAGTGCGCAAGTTGTGTTTCACATTCATTATGTGGGATCCGTTGTTGAACGAGTTTCCCGAAACCGTTCACGGTTTTAGGTGTATGCTAGCAGTTAAATATTTGCAGTTAGTAGAAAATGCGTATTCCCCAGATACTTTGGGATACGATTTAATTAGGGATTTAATTTCAGTAATAAGGGCTAGGAATTATGTCGAAGCGACCAGCAGATATAATCATTTCCACGCCCGCCTCGAAGGTACGTCGCCGTCTCAATTTCGACAGCCCATATGCGAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACAAAGGCAAGGGCATGGGCGAACAGGCCCATGAACCGAAAGCCCAGGATGTACAGGATGTACAGAAGCCCAGATGTTCCTAG
Protein Sequence MVPPINLVRKLCFTFIMWDPLLNEFPETVHGFRCMLAVKYLQLVENAYSPDTLGYDLIRDLISVIRARNYVEATSRYNHFHARLEGTSPSQFRQPICEPCCCPHCPRHKGKGMGEQAHEPKAQDVQDVQKPRCS

NCBI Accession YP_717915.1
Location 305-1075
Protein Name CP
Coding Region ATGTCGAAGCGACCAGCAGATATAATCATTTCCACGCCCGCCTCGAAGGTACGTCGCCGTCTCAATTTCGACAGCCCATATGCGAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACAAAGGCAAGGGCATGGGCGAACAGGCCCATGAACCGAAAGCCCAGGATGTACAGGATGTACAGAAGCCCAGATGTTCCTAGAGGATGTGAAGGCCCGTGTAAGGTCCAGTCATTTGAGTCCAGACATGATATCCAGCACATTGGTAAAGTCATGTGTGTTAGTGATGTTACTCGTGGTATTGGGCTGACCCACAGGGTAGGCAAGAGATTCTGTGTCAAGTCCGTTTATGTTTTGGGCAAGATTTGGATGGATGAGAACATCAAGACCAAGAATCATACGAATAGTGTGATGTTTTTTCTAGTTAGAGACCGTAGACCAGTTGATAAACCTCAGGATTTTGGAGAGGTTTTTAATATGTTTGATAATGAGCCCAGCACGGCGACTGTGAAGAATGTTCATCGTGATAGATACCAGGTATTAAGGAAGTGGTATGCAACTGTCACTGGTGGACAATATGCATCGAAGGAGCAGGCTCTCGTGAAGAAGTTTATTAGGGTTAATAATTATGTTGTGTACAACCAGCAAGAGGCTGGGAAGTATGAGAATCATACTGAGAATGCGTTAATGTTGTATATGGCGTGTACTCACGCCTCTAACCCTGTGTATGCTACATTGAAGATACGGATCTACTTCTATGATTCAGTATCGAATTAA
Protein Sequence MSKRPADIIISTPASKVRRRLNFDSPYASRAAAPIVRVTKARAWANRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDIQHIGKVMCVSDVTRGIGLTHRVGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEPSTATVKNVHRDRYQVLRKWYATVTGGQYASKEQALVKKFIRVNNYVVYNQQEAGKYENHTENALMLYMACTHASNPVYATLKIRIYFYDSVSN

NCBI Accession YP_717916.1
Location 1072-1476
Protein Name C3
Coding Region ATGGATTCACGCACAGGGGAACTCATCACTGCAGCTCAAGCACAGAATGGCGTGTTTATCTGGGAGGTTCAAAATCCCCTCTATTTCAAGATAACAGAGCACCACAACAGGCCATTCCTCATGAACCAAGACATCATCACTGTCCAGATACAGTTCAATCACAACCTGAGGAAAGCGTTGGGAATACACAAATGTTTCCTAGCCTTCCGAATCTGGATGACCTCACAGCCTCCGACTGGTCGTTTCTTAAGGGTCTTTAAGACACAAGTGCTTAAGTATTTAGATAATCTAGGAGTTATCAGTATTAACAATGTAATTAGAGCAGTTGATCATGTATTATGGAATGTATTAGAGCATATTGTATATGTAAAACAATCATCTTCAATAAAATTCAATATTTATTAA
Protein Sequence MDSRTGELITAAQAQNGVFIWEVQNPLYFKITEHHNRPFLMNQDIITVQIQFNHNLRKALGIHKCFLAFRIWMTSQPPTGRFLRVFKTQVLKYLDNLGVISINNVIRAVDHVLWNVLEHIVYVKQSSSIKFNIY

NCBI Accession YP_717917.1
Location 1217-1621
Protein Name C2
Coding Region ATGCGATCTTCGTCACCCTCGAAGGCCCACTCTACTCAGGTTCCAATCAAAGTGCAGCACAGGCTAGCCAAGAAAGGGACCAGGCGTCGTCGTGTTGATCTCCCGTGTGGGTGTTCATACTTCATAGCCTTAGCCTGCCACGACCATGGATTCACGCACAGGGGAACTCATCACTGCAGCTCAAGCACAGAATGGCGTGTTTATCTGGGAGGTTCAAAATCCCCTCTATTTCAAGATAACAGAGCACCACAACAGGCCATTCCTCATGAACCAAGACATCATCACTGTCCAGATACAGTTCAATCACAACCTGAGGAAAGCGTTGGGAATACACAAATGTTTCCTAGCCTTCCGAATCTGGATGACCTCACAGCCTCCGACTGGTCGTTTCTTAAGGGTCTTTAA
Protein Sequence MRSSSPSKAHSTQVPIKVQHRLAKKGTRRRRVDLPCGCSYFIALACHDHGFTHRGTHHCSSSTEWRVYLGGSKSPLFQDNRAPQQAIPHEPRHHHCPDTVQSQPEESVGNTQMFPSLPNLDDLTASDWSFLKGL

NCBI Accession YP_717918.1
Location 1524-2606
Protein Name Rep
Coding Region ATGCCCCCAAAGCGTTTCCTTATTAATTCGAAAAATTATTTCCTCACTTATCCCAAGTGCTCTCTCACCAAAGAGGAAGCACTTTCCCAATTCCAAAACCTACAAACCCCAGTAAACAAAAAATACATTAAAATCTGCAGAGAGTTTCATGAAAATGGGGAACCTCATCTTCACGTGCTCATCCAGTTCGAGGGAAAATACAAGTGCCAAAATCAGCGATTCTTCGACCTGGTATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCAAGCTCAGACGTCAAGTCCTATCTGGAGAAGGACGGAGACACCCTCGACTGGGGAGAGTTTCAGATCGATGGAAGATCTGCAAGAGGGGGACAACAGTCAGCCAACGACGCTTACGCCGCAGCGCTTAACGCAGGCAGTAAGTCAGAAGCTCTTAGAGTAATTAAAGAATTAGCACCAAAAGATTATGTACTTCAATTTCATAATTTAAATGCTAATTTAGATAGGATTTTTACACCTCCCATGGAGGTTTATGTTTCTCCTTTTTCTTCTTCTTCTTTTGATCAAGTTCCGGAAGAACTTGAAGAATGGGCTGCTGAGAACGTCGTGGGTGCCGCTGCGCGGCCATTGAGACCTAAAAGTATTGTCATAGAGGGTGATAGTCGTACGGGGAAGACAATGTGGGCCAGGTCACTGGGTCCACACAATTATCTGTGTGGTCATCTAGACCTTAGTCCAAAGGTTTACAGCAACGAGGCCTGGTACAACGTCATTGATGACGTCGATCCCCACTACCTAAAGCACTTTAAAGAATTCATGGGGGCCCAAAGGGACTGGCAATCAAATACAAAGTACGGAAAGCCAGTTCAAATTAAAGGCGGAATTCCCACTATCTTCCTCTGCAATCCAGGACCCAACTCAAGCTATAAAGAGTTTTTGGATGAGGAGAAGAATTCTGCACTCAAAAATTGGGCATTAAAGAATGCGATCTTCGTCACCCTCGAAGGCCCACTCTACTCAGGTTCCAATCAAAGTGCAGCACAGGCTAGCCAAGAAAGGGACCAGGCGTCGTCGTGTTGA
Protein Sequence MPPKRFLINSKNYFLTYPKCSLTKEEALSQFQNLQTPVNKKYIKICREFHENGEPHLHVLIQFEGKYKCQNQRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYLEKDGDTLDWGEFQIDGRSARGGQQSANDAYAAALNAGSKSEALRVIKELAPKDYVLQFHNLNANLDRIFTPPMEVYVSPFSSSSFDQVPEELEEWAAENVVGAAARPLRPKSIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNEAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNSALKNWALKNAIFVTLEGPLYSGSNQSAAQASQERDQASSC

NCBI Accession YP_717919.1
Location 2162-2458
Protein Name C4
Coding Region ATGAAAATGGGGAACCTCATCTTCACGTGCTCATCCAGTTCGAGGGAAAATACAAGTGCCAAAATCAGCGATTCTTCGACCTGGTATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCAAGCTCAGACGTCAAGTCCTATCTGGAGAAGGACGGAGACACCCTCGACTGGGGAGAGTTTCAGATCGATGGAAGATCTGCAAGAGGGGGACAACAGTCAGCCAACGACGCTTACGCCGCAGCGCTTAACGCAGGCAGTAAGTCAGAAGCTCTTAGAGTAA
Protein Sequence MKMGNLIFTCSSSSRENTSAKISDSSTWYPQPGQHISIRTFRELNQAQTSSPIWRRTETPSTGESFRSMEDLQEGDNSQPTTLTPQRLTQAVSQKLLE