Pedilanthus leaf curl virus
Basic Information
Genus |
Begomovirus
|
NCBI Assembly |
GCF_000868385.1 |
Isolate |
Pakistan: Rahim Yar Khan |
Release date |
2015/2/13 |
Submitter |
Tsai,W.-S., Green,S.K., Behjatnia,S.A.A., Rezaian,A., Iram,S., Mansoor |
Host |
|
Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCGGATGGCCGCGCTTTTTTTATGGCCCCCACAGAGCACTAACTGACAATGACATGTGGACCAATGAGAATCGTTCCTCGTAGCCTAGTTATTTCATGGTCCCCCCTATAAACTTAGTGCGCAAGTTGTGTTTCACATTCATTATGTGGGATCCGTTGTTGAACGAGTTTCCCGAAACCGTTCACGGTTTTAGGTGTATGCTAGCAGTTAAATATTTGCAGTTAGTAGAAAATGCGTATTCCCCAGATACTTTGGGATACGATTTAATTAGGGATTTAATTTCAGTAATAAGGGCTAGGAATTATGTCGAAGCGACCAGCAGATATAATCATTTCCACGCCCGCCTCGAAGGTACGTCGCCGTCTCAATTTCGACAGCCCATATGCGAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACAAAGGCAAGGGCATGGGCGAACAGGCCCATGAACCGAAAGCCCAGGATGTACAGGATGTACAGAAGCCCAGATGTTCCTAGAGGATGTGAAGGCCCGTGTAAGGTCCAGTCATTTGAGTCCAGACATGATATCCAGCACATTGGTAAAGTCATGTGTGTTAGTGATGTTACTCGTGGTATTGGGCTGACCCACAGGGTAGGCAAGAGATTCTGTGTCAAGTCCGTTTATGTTTTGGGCAAGATTTGGATGGATGAGAACATCAAGACCAAGAATCATACGAATAGTGTGATGTTTTTTCTAGTTAGAGACCGTAGACCAGTTGATAAACCTCAGGATTTTGGAGAGGTTTTTAATATGTTTGATAATGAGCCCAGCACGGCGACTGTGAAGAATGTTCATCGTGATAGATACCAGGTATTAAGGAAGTGGTATGCAACTGTCACTGGTGGACAATATGCATCGAAGGAGCAGGCTCTCGTGAAGAAGTTTATTAGGGTTAATAATTATGTTGTGTACAACCAGCAAGAGGCTGGGAAGTATGAGAATCATACTGAGAATGCGTTAATGTTGTATATGGCGTGTACTCACGCCTCTAACCCTGTGTATGCTACATTGAAGATACGGATCTACTTCTATGATTCAGTATCGAATTAATAAATATTGAATTTTATTGAAGATGATTGTTTTACATATACAATATGCTCTAATACATTCCATAATACATGATCAACTGCTCTAATTACATTGTTAATACTGATAACTCCTAGATTATCTAAATACTTAAGCACTTGTGTCTTAAAGACCCTTAAGAAACGACCAGTCGGAGGCTGTGAGGTCATCCAGATTCGGAAGGCTAGGAAACATTTGTGTATTCCCAACGCTTTCCTCAGGTTGTGATTGAACTGTATCTGGACAGTGATGATGTCTTGGTTCATGAGGAATGGCCTGTTGTGGTGCTCTGTTATCTTGAAATAGAGGGGATTTTGAACCTCCCAGATAAACACGCCATTCTGTGCTTGAGCTGCAGTGATGAGTTCCCCTGTGCGTGAATCCATGGTCGTGGCAGGCTAAGGCTATGAAGTATGAACACCCACACGGGAGATCAACACGACGACGCCTGGTCCCTTTCTTGGCTAGCCTGTGCTGCACTTTGATTGGAACCTGAGTAGAGTGGGCCTTCGAGGGTGACGAAGATCGCATTCTTTAATGCCCAATTTTTGAGTGCAGAATTCTTCTCCTCATCCAAAAACTCTTTATAGCTTGAGTTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTTCCGTACTTTGTATTTGATTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGGTAGTGGGGATCGACGTCATCAATGACGTTGTACCAGGCCTCGTTGCTGTAAACCTTTGGACTAAGGTCTAGATGACCACACAGATAATTGTGTGGACCCAGTGACCTGGCCCACATTGTCTTCCCCGTACGACTATCACCCTCTATGACAATACTTTTAGGTCTCAATGGCCGCGCAGCGGCACCCACGACGTTCTCAGCAGCCCATTCTTCAAGTTCTTCCGGAACTTGATCAAAAGAAGAAGAAGAAAAAGGAGAAACATAAACCTCCATGGGAGGTGTAAAAATCCTATCTAAATTAGCATTTAAATTATGAAATTGAAGTACATAATCTTTTGGTGCTAATTCTTTAATTACTCTAAGAGCTTCTGACTTACTGCCTGCGTTAAGCGCTGCGGCGTAAGCGTCGTTGGCTGACTGTTGTCCCCCTCTTGCAGATCTTCCATCGATCTGAAACTCTCCCCAGTCGAGGGTGTCTCCGTCCTTCTCCAGATAGGACTTGACGTCTGAGCTTGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGATACCAGGTCGAAGAATCGCTGATTTTGGCACTTGTATTTTCCCTCGAACTGGATGAGCACGTGAAGATGAGGTTCCCCATTTTCATGAAACTCTCTGCAGATTTTAATGTATTTTTTGTTTACTGGGGTTTGTAGGTTTTGGAATTGGGAAAGTGCTTCCTCTTTGGTGAGAGAGCACTTGGGATAAGTGAGGAAATAATTTTTCGAATTAATAAGGAAACGCTTTGGGGGCATGTTGACCAAGTGAGAGGACCCGATTGACCGCTCTTGCAACTCTCCCCTGTATATCGGGTCTCAATATATAGTGAGACCCAAATGGCATTATTGTAATTTGGATAACAGATTCAAAATTCTGACGCTCCAAAAAGCGGCCATCCGTATAATATT
Gene Information
NCBI Accession
|
YP_717914.1
|
Location
|
97-501 |
Protein Name
|
V2 |
Coding Region
|
ATGGTCCCCCCTATAAACTTAGTGCGCAAGTTGTGTTTCACATTCATTATGTGGGATCCGTTGTTGAACGAGTTTCCCGAAACCGTTCACGGTTTTAGGTGTATGCTAGCAGTTAAATATTTGCAGTTAGTAGAAAATGCGTATTCCCCAGATACTTTGGGATACGATTTAATTAGGGATTTAATTTCAGTAATAAGGGCTAGGAATTATGTCGAAGCGACCAGCAGATATAATCATTTCCACGCCCGCCTCGAAGGTACGTCGCCGTCTCAATTTCGACAGCCCATATGCGAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACAAAGGCAAGGGCATGGGCGAACAGGCCCATGAACCGAAAGCCCAGGATGTACAGGATGTACAGAAGCCCAGATGTTCCTAG |
Protein Sequence
|
MVPPINLVRKLCFTFIMWDPLLNEFPETVHGFRCMLAVKYLQLVENAYSPDTLGYDLIRDLISVIRARNYVEATSRYNHFHARLEGTSPSQFRQPICEPCCCPHCPRHKGKGMGEQAHEPKAQDVQDVQKPRCS |
NCBI Accession
|
YP_717915.1
|
Location
|
305-1075 |
Protein Name
|
CP |
Coding Region
|
ATGTCGAAGCGACCAGCAGATATAATCATTTCCACGCCCGCCTCGAAGGTACGTCGCCGTCTCAATTTCGACAGCCCATATGCGAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACAAAGGCAAGGGCATGGGCGAACAGGCCCATGAACCGAAAGCCCAGGATGTACAGGATGTACAGAAGCCCAGATGTTCCTAGAGGATGTGAAGGCCCGTGTAAGGTCCAGTCATTTGAGTCCAGACATGATATCCAGCACATTGGTAAAGTCATGTGTGTTAGTGATGTTACTCGTGGTATTGGGCTGACCCACAGGGTAGGCAAGAGATTCTGTGTCAAGTCCGTTTATGTTTTGGGCAAGATTTGGATGGATGAGAACATCAAGACCAAGAATCATACGAATAGTGTGATGTTTTTTCTAGTTAGAGACCGTAGACCAGTTGATAAACCTCAGGATTTTGGAGAGGTTTTTAATATGTTTGATAATGAGCCCAGCACGGCGACTGTGAAGAATGTTCATCGTGATAGATACCAGGTATTAAGGAAGTGGTATGCAACTGTCACTGGTGGACAATATGCATCGAAGGAGCAGGCTCTCGTGAAGAAGTTTATTAGGGTTAATAATTATGTTGTGTACAACCAGCAAGAGGCTGGGAAGTATGAGAATCATACTGAGAATGCGTTAATGTTGTATATGGCGTGTACTCACGCCTCTAACCCTGTGTATGCTACATTGAAGATACGGATCTACTTCTATGATTCAGTATCGAATTAA |
Protein Sequence
|
MSKRPADIIISTPASKVRRRLNFDSPYASRAAAPIVRVTKARAWANRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDIQHIGKVMCVSDVTRGIGLTHRVGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEPSTATVKNVHRDRYQVLRKWYATVTGGQYASKEQALVKKFIRVNNYVVYNQQEAGKYENHTENALMLYMACTHASNPVYATLKIRIYFYDSVSN |
NCBI Accession
|
YP_717916.1
|
Location
|
1072-1476 |
Protein Name
|
C3 |
Coding Region
|
ATGGATTCACGCACAGGGGAACTCATCACTGCAGCTCAAGCACAGAATGGCGTGTTTATCTGGGAGGTTCAAAATCCCCTCTATTTCAAGATAACAGAGCACCACAACAGGCCATTCCTCATGAACCAAGACATCATCACTGTCCAGATACAGTTCAATCACAACCTGAGGAAAGCGTTGGGAATACACAAATGTTTCCTAGCCTTCCGAATCTGGATGACCTCACAGCCTCCGACTGGTCGTTTCTTAAGGGTCTTTAAGACACAAGTGCTTAAGTATTTAGATAATCTAGGAGTTATCAGTATTAACAATGTAATTAGAGCAGTTGATCATGTATTATGGAATGTATTAGAGCATATTGTATATGTAAAACAATCATCTTCAATAAAATTCAATATTTATTAA |
Protein Sequence
|
MDSRTGELITAAQAQNGVFIWEVQNPLYFKITEHHNRPFLMNQDIITVQIQFNHNLRKALGIHKCFLAFRIWMTSQPPTGRFLRVFKTQVLKYLDNLGVISINNVIRAVDHVLWNVLEHIVYVKQSSSIKFNIY |
NCBI Accession
|
YP_717917.1
|
Location
|
1217-1621 |
Protein Name
|
C2 |
Coding Region
|
ATGCGATCTTCGTCACCCTCGAAGGCCCACTCTACTCAGGTTCCAATCAAAGTGCAGCACAGGCTAGCCAAGAAAGGGACCAGGCGTCGTCGTGTTGATCTCCCGTGTGGGTGTTCATACTTCATAGCCTTAGCCTGCCACGACCATGGATTCACGCACAGGGGAACTCATCACTGCAGCTCAAGCACAGAATGGCGTGTTTATCTGGGAGGTTCAAAATCCCCTCTATTTCAAGATAACAGAGCACCACAACAGGCCATTCCTCATGAACCAAGACATCATCACTGTCCAGATACAGTTCAATCACAACCTGAGGAAAGCGTTGGGAATACACAAATGTTTCCTAGCCTTCCGAATCTGGATGACCTCACAGCCTCCGACTGGTCGTTTCTTAAGGGTCTTTAA |
Protein Sequence
|
MRSSSPSKAHSTQVPIKVQHRLAKKGTRRRRVDLPCGCSYFIALACHDHGFTHRGTHHCSSSTEWRVYLGGSKSPLFQDNRAPQQAIPHEPRHHHCPDTVQSQPEESVGNTQMFPSLPNLDDLTASDWSFLKGL |
NCBI Accession
|
YP_717918.1
|
Location
|
1524-2606 |
Protein Name
|
Rep |
Coding Region
|
ATGCCCCCAAAGCGTTTCCTTATTAATTCGAAAAATTATTTCCTCACTTATCCCAAGTGCTCTCTCACCAAAGAGGAAGCACTTTCCCAATTCCAAAACCTACAAACCCCAGTAAACAAAAAATACATTAAAATCTGCAGAGAGTTTCATGAAAATGGGGAACCTCATCTTCACGTGCTCATCCAGTTCGAGGGAAAATACAAGTGCCAAAATCAGCGATTCTTCGACCTGGTATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCAAGCTCAGACGTCAAGTCCTATCTGGAGAAGGACGGAGACACCCTCGACTGGGGAGAGTTTCAGATCGATGGAAGATCTGCAAGAGGGGGACAACAGTCAGCCAACGACGCTTACGCCGCAGCGCTTAACGCAGGCAGTAAGTCAGAAGCTCTTAGAGTAATTAAAGAATTAGCACCAAAAGATTATGTACTTCAATTTCATAATTTAAATGCTAATTTAGATAGGATTTTTACACCTCCCATGGAGGTTTATGTTTCTCCTTTTTCTTCTTCTTCTTTTGATCAAGTTCCGGAAGAACTTGAAGAATGGGCTGCTGAGAACGTCGTGGGTGCCGCTGCGCGGCCATTGAGACCTAAAAGTATTGTCATAGAGGGTGATAGTCGTACGGGGAAGACAATGTGGGCCAGGTCACTGGGTCCACACAATTATCTGTGTGGTCATCTAGACCTTAGTCCAAAGGTTTACAGCAACGAGGCCTGGTACAACGTCATTGATGACGTCGATCCCCACTACCTAAAGCACTTTAAAGAATTCATGGGGGCCCAAAGGGACTGGCAATCAAATACAAAGTACGGAAAGCCAGTTCAAATTAAAGGCGGAATTCCCACTATCTTCCTCTGCAATCCAGGACCCAACTCAAGCTATAAAGAGTTTTTGGATGAGGAGAAGAATTCTGCACTCAAAAATTGGGCATTAAAGAATGCGATCTTCGTCACCCTCGAAGGCCCACTCTACTCAGGTTCCAATCAAAGTGCAGCACAGGCTAGCCAAGAAAGGGACCAGGCGTCGTCGTGTTGA |
Protein Sequence
|
MPPKRFLINSKNYFLTYPKCSLTKEEALSQFQNLQTPVNKKYIKICREFHENGEPHLHVLIQFEGKYKCQNQRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYLEKDGDTLDWGEFQIDGRSARGGQQSANDAYAAALNAGSKSEALRVIKELAPKDYVLQFHNLNANLDRIFTPPMEVYVSPFSSSSFDQVPEELEEWAAENVVGAAARPLRPKSIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNEAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNSALKNWALKNAIFVTLEGPLYSGSNQSAAQASQERDQASSC |
NCBI Accession
|
YP_717919.1
|
Location
|
2162-2458 |
Protein Name
|
C4 |
Coding Region
|
ATGAAAATGGGGAACCTCATCTTCACGTGCTCATCCAGTTCGAGGGAAAATACAAGTGCCAAAATCAGCGATTCTTCGACCTGGTATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCAAGCTCAGACGTCAAGTCCTATCTGGAGAAGGACGGAGACACCCTCGACTGGGGAGAGTTTCAGATCGATGGAAGATCTGCAAGAGGGGGACAACAGTCAGCCAACGACGCTTACGCCGCAGCGCTTAACGCAGGCAGTAAGTCAGAAGCTCTTAGAGTAA |
Protein Sequence
|
MKMGNLIFTCSSSSRENTSAKISDSSTWYPQPGQHISIRTFRELNQAQTSSPIWRRTETPSTGESFRSMEDLQEGDNSQPTTLTPQRLTQAVSQKLLE |