Papaya yellow leaf curl virus


Basic Information

Genus Begomovirus
Isolate India
Vector
Download Genome |GFF3 |PEP |CDS

Genomic Organization


JBrowse


Genome

MH807204
ACCGGATGGCCGCGATTTTTAAATGGCCCGCGCAACGCAAAATCTGACAATGACATGTGGACCAATCACTTTGGCTGGTCGTGGGTTAATTTTTTTGTGGTGGCTTATTTAAAGTTGCTCACCAAGTAGTGCCTCACGTTCACTATGTGGGATCCATTAGTGAACGAGTTTCCCGAAACCGTTCACGGTTTAAGATGTATGTTAGCAGTTAAATATCTGCAGTTAGTAGAGAAGACTTATTCTCCCGATACATTATTGCACGATTTAATTAGGGATTTAATTTCAGTAATTAGGGCTAGAAATTATGTCGAAGCGACCAGCAGATATAATCAATTCCACGCCCGCTTCGAAGGTACGCCGCCGTCTCAACTTCGACAGCCTATATGCGAGCGGTACTGCTGCCCCAATTGTCCGCGTCACAAAGGCAAGGGCATGCGCGAACAGGCCAATGTACAGGAAGCCCAGGATGTACAGGCTGTACAGAAGTCCGGATGTTCCTAGGGGCTGTGAAGGACCATGTAAGGTCCAGTCATTTGAGTTCAGACATGATATACAGCATATTGGTAAAGTTATGTGTGTTAGTGATGTTACTCGTGGTATTGGTTTGACCCACAGGGTTGGCAAGAGGTTCTGTGTGAAATCCGTTTATGTTTTGGGCAAGATCTGGATGGATGAGAACATCAAGACGAAGAATCATACGAATAGTGTTATGTTGTTTCTTCTTCGTGATCGAAGGCCCGTTGACAAGCCTCAAGATTTTGGTGAGGCTTTTAACATGTTTGATAATGAGCCCAGCACGGCGACTGTGAAGAATGTTCATCGTGATAGGTACCAGGTATTAAGGAAGTGGCACGCCACTGTGACAGGCGGTCAGTATGCATCGAAGGAGCAGGCTCTCGTGAAGAAGTTTATTAGGGTTAATAATTATGTTGTGTACAACCAGCAAGAGGCTGGCAAGTATGAGAATCATACTGAGAATGCATTGATGTTGTATATGGCGTGTACGCATGCCTCCAACCCTGTGAATGCTACATTTCAGATACGGATCTACTTCTATGATTCCGTAACAAATTAATAAATATTGAATTTTATTGAATACGACTGTTCTACATAAATTGTTTGATCTAATACATTCCATAATACATGATCAACTGCCCTAATTACATTGTTTATACTGACAACTCCTAAATTATCTAAATACTGCATAACTTGGGTCCTAAAGACCCTTAAGAAACGACCAGTCGGAGGCTGTGAGGTCATCCAGATTCGGAAAGCTATGAAACATTTGTGAATCCCCAACGCTTTCCTCAGGTTGTGATTGAACTGTACTTGTATGGTTATGATGTCGTTGCTCATGAGGACTGGTCGGTTGTGGTGCTCTGTTATCTTGAAATACAGGGGATTTTGAATTTCCCAGGTATACACGCCATTCATTGCCTGAGCTGCAGTGATGGGTTCCCCTGTGCGTGAATCCATAGTTGTGGCAGCGTAATGCGATGAAGTATGAACAGCCACAGTCCAGATCAACGCGACGACGCCTGATGCCCTTCTTGGCTAGCCTGTGCTGCACTTTGATTGGAACTTGAGTAGAGTGGTCCTTCGAGGGTGACGAAGATCGCATTCTTTAATGCCCAATTTTTTAGTGCTGAATTCTTCTCTTCATCCAAGAACTCTTTATAGCTGGAATTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAACTGGCTTTCCGTACTTGGTGTTGCTTTGCCAATCCCTTTGGGCCCCCATGAATTCCTTAAAGTGCTTTAAGTAGTGGGGATCGACGTCATCAATGACGTTGTTCCAGGCCTCATTACTGTACACCTTTGGACTAAGGTCTAAATGACCACACAGATAATTATGTGGTCCCAAAGACCTAGCCCACATTGTTTTCCCTGTCCGACTGTCACCCTCAATCACTATACTTATGGGTCTTAAAGGCCCGCGCAGCGGCACTGACGACGTTCTCGGCAGCCCATTCCTCAAGTTCTTCTGGAACTTGATCGAAGGAAGATGAAGAAAAGGGGAAAACATAAACCTCCATTGGAGGTGCAAAAATCCTATGTAAATTAGCATATAAATTATGAAATTGTAACACATAATCCTTTGGTGCGAATCCTTTATGACTCTAAGAGCCTCTGACTTACTGCCTGTGTTAATGGCTTGGGCGTAAGCATCATTGGCTGACTGTTGTCCCCCCCGTGCAGATCGTCCGTCGATCTGAAACTCTCCCCAATCGAGGGTGTCTCCGTCCTTCTCCATATAGGACTTGACATCTGAGCTCGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGATACCAGGTCGAAGAATCTGTTATTTTGGCACTTGAATTTTCCTTCGAATTGGATAAGCACGTGAAGATGAGGAGCCCCATCTTCGTGTATCTCTCTGCAGATCTTGATGAATTTTTTGGATGGTTGGGTTTGGGTATTTAACATTTGGGAAAGTGCCTCTTCCTTAGTAAGTGAGCACTTAGGATATGTGAAGAAATAATTTTTGGCATTTATTTGAAACCGCTTGGGGGTCATATTGACTTGGTCAGAGGATCGGGTATCTCAGACTGGACTCTATTATCGGTGAATTGGTACTCAATATATAGTGAGACTCAAATGGCAATTTGGTCATTTTGAACAAATTATTCAAGATCCTAAAGCCCCCATCAGCGGCCATCCGTATAATATT

Gene Information

NCBI Accession QBO66572.1
Location 145-501
Gene Name AV2
Protein Name pre-coat
Coding Region ATGTGGGATCCATTAGTGAACGAGTTTCCCGAAACCGTTCACGGTTTAAGATGTATGTTAGCAGTTAAATATCTGCAGTTAGTAGAGAAGACTTATTCTCCCGATACATTATTGCACGATTTAATTAGGGATTTAATTTCAGTAATTAGGGCTAGAAATTATGTCGAAGCGACCAGCAGATATAATCAATTCCACGCCCGCTTCGAAGGTACGCCGCCGTCTCAACTTCGACAGCCTATATGCGAGCGGTACTGCTGCCCCAATTGTCCGCGTCACAAAGGCAAGGGCATGCGCGAACAGGCCAATGTACAGGAAGCCCAGGATGTACAGGCTGTACAGAAGTCCGGATGTTCCTAG
Protein Sequence MWDPLVNEFPETVHGLRCMLAVKYLQLVEKTYSPDTLLHDLIRDLISVIRARNYVEATSRYNQFHARFEGTPPSQLRQPICERYCCPNCPRHKGKGMREQANVQEAQDVQAVQKSGCS

NCBI Accession QBO66573.1
Location 305-1075
Gene Name AV1
Protein Name coat protein
Coding Region ATGTCGAAGCGACCAGCAGATATAATCAATTCCACGCCCGCTTCGAAGGTACGCCGCCGTCTCAACTTCGACAGCCTATATGCGAGCGGTACTGCTGCCCCAATTGTCCGCGTCACAAAGGCAAGGGCATGCGCGAACAGGCCAATGTACAGGAAGCCCAGGATGTACAGGCTGTACAGAAGTCCGGATGTTCCTAGGGGCTGTGAAGGACCATGTAAGGTCCAGTCATTTGAGTTCAGACATGATATACAGCATATTGGTAAAGTTATGTGTGTTAGTGATGTTACTCGTGGTATTGGTTTGACCCACAGGGTTGGCAAGAGGTTCTGTGTGAAATCCGTTTATGTTTTGGGCAAGATCTGGATGGATGAGAACATCAAGACGAAGAATCATACGAATAGTGTTATGTTGTTTCTTCTTCGTGATCGAAGGCCCGTTGACAAGCCTCAAGATTTTGGTGAGGCTTTTAACATGTTTGATAATGAGCCCAGCACGGCGACTGTGAAGAATGTTCATCGTGATAGGTACCAGGTATTAAGGAAGTGGCACGCCACTGTGACAGGCGGTCAGTATGCATCGAAGGAGCAGGCTCTCGTGAAGAAGTTTATTAGGGTTAATAATTATGTTGTGTACAACCAGCAAGAGGCTGGCAAGTATGAGAATCATACTGAGAATGCATTGATGTTGTATATGGCGTGTACGCATGCCTCCAACCCTGTGAATGCTACATTTCAGATACGGATCTACTTCTATGATTCCGTAACAAATTAA
Protein Sequence MSKRPADIINSTPASKVRRRLNFDSLYASGTAAPIVRVTKARACANRPMYRKPRMYRLYRSPDVPRGCEGPCKVQSFEFRHDIQHIGKVMCVSDVTRGIGLTHRVGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMLFLLRDRRPVDKPQDFGEAFNMFDNEPSTATVKNVHRDRYQVLRKWHATVTGGQYASKEQALVKKFIRVNNYVVYNQQEAGKYENHTENALMLYMACTHASNPVNATFQIRIYFYDSVTN

NCBI Accession QBO66577.1
Location 530-820
Gene Name AC5
Protein Name AC5
Coding Region ATGAACATTCTTCACAGTCGCCGTGCTGGGCTCATTATCAAACATGTTAAAAGCCTCACCAAAATCTTGAGGCTTGTCAACGGGCCTTCGATCACGAAGAAGAAACAACATAACACTATTCGTATGATTCTTCGTCTTGATGTTCTCATCCATCCAGATCTTGCCCAAAACATAAACGGATTTCACACAGAACCTCTTGCCAACCCTGTGGGTCAAACCAATACCACGAGTAACATCACTAACACACATAACTTTACCAATATGCTGTATATCATGTCTGAACTCAAATGA
Protein Sequence MNILHSRRAGLIIKHVKSLTKILRLVNGPSITKKKQHNTIRMILRLDVLIHPDLAQNINGFHTEPLANPVGQTNTTSNITNTHNFTNMLYIMSELK

NCBI Accession QBO66575.1
Location 1072-1476
Gene Name AC3
Protein Name replication enhancer protein
Coding Region ATGGATTCACGCACAGGGGAACCCATCACTGCAGCTCAGGCAATGAATGGCGTGTATACCTGGGAAATTCAAAATCCCCTGTATTTCAAGATAACAGAGCACCACAACCGACCAGTCCTCATGAGCAACGACATCATAACCATACAAGTACAGTTCAATCACAACCTGAGGAAAGCGTTGGGGATTCACAAATGTTTCATAGCTTTCCGAATCTGGATGACCTCACAGCCTCCGACTGGTCGTTTCTTAAGGGTCTTTAGGACCCAAGTTATGCAGTATTTAGATAATTTAGGAGTTGTCAGTATAAACAATGTAATTAGGGCAGTTGATCATGTATTATGGAATGTATTAGATCAAACAATTTATGTAGAACAGTCGTATTCAATAAAATTCAATATTTATTAA
Protein Sequence MDSRTGEPITAAQAMNGVYTWEIQNPLYFKITEHHNRPVLMSNDIITIQVQFNHNLRKALGIHKCFIAFRIWMTSQPPTGRFLRVFRTQVMQYLDNLGVVSINNVIRAVDHVLWNVLDQTIYVEQSYSIKFNIY

NCBI Accession QBO66574.1
Location 1217-1621
Gene Name AC2
Protein Name transcriptional activator protein
Coding Region ATGCGATCTTCGTCACCCTCGAAGGACCACTCTACTCAAGTTCCAATCAAAGTGCAGCACAGGCTAGCCAAGAAGGGCATCAGGCGTCGTCGCGTTGATCTGGACTGTGGCTGTTCATACTTCATCGCATTACGCTGCCACAACTATGGATTCACGCACAGGGGAACCCATCACTGCAGCTCAGGCAATGAATGGCGTGTATACCTGGGAAATTCAAAATCCCCTGTATTTCAAGATAACAGAGCACCACAACCGACCAGTCCTCATGAGCAACGACATCATAACCATACAAGTACAGTTCAATCACAACCTGAGGAAAGCGTTGGGGATTCACAAATGTTTCATAGCTTTCCGAATCTGGATGACCTCACAGCCTCCGACTGGTCGTTTCTTAAGGGTCTTTAG
Protein Sequence MRSSSPSKDHSTQVPIKVQHRLAKKGIRRRRVDLDCGCSYFIALRCHNYGFTHRGTHHCSSGNEWRVYLGNSKSPVFQDNRAPQPTSPHEQRHHNHTSTVQSQPEESVGDSQMFHSFPNLDDLTASDWSFLKGL

NCBI Accession QBO66578.1
Location 1524-2606
Gene Name AC1
Protein Name replication associated protein
Coding Region ATGACCCCCAAGCGGTTTCAAATAAATGCCAAAAATTATTTCTTCACATATCCTAAGTGCTCACTTACTAAGGAAGAGGCACTTTCCCAAATGTTAAATACCCAAACCCAACCATCCAAAAAATTCATCAAGATCTGCAGAGAGATACACGAAGATGGGGCTCCTCATCTTCACGTGCTTATCCAATTCGAAGGAAAATTCAAGTGCCAAAATAACAGATTCTTCGACCTGGTATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCGAGCTCAGATGTCAAGTCCTATATGGAGAAGGACGGAGACACCCTCGATTGGGGAGAGTTTCAGATCGACGGACGATCTGCACGGGGGGGACAACAGTCAGCCAATGATGCTTACGCCCAAGCCATTAACACAGGCAGTAAGTCAGAGGCTCTTAGAGTCATAAAGGATTCGCACCAAAGGATTATGTGTTACAATTTCATAATTTATATGCTAATTTACATAGGATTTTTGCACCTCCAATGGAGGTTTATGTTTTCCCCTTTTCTTCATCTTCCTTCGATCAAGTTCCAGAAGAACTTGAGGAATGGGCTGCCGAGAACGTCGTCAGTGCCGCTGCGCGGGCCTTTAAGACCCATAAGTATAGTGATTGAGGGTGACAGTCGGACAGGGAAAACAATGTGGGCTAGGTCTTTGGGACCACATAATTATCTGTGTGGTCATTTAGACCTTAGTCCAAAGGTGTACAGTAATGAGGCCTGGAACAACGTCATTGATGACGTCGATCCCCACTACTTAAAGCACTTTAAGGAATTCATGGGGGCCCAAAGGGATTGGCAAAGCAACACCAAGTACGGAAAGCCAGTTCAAATTAAAGGTGGAATTCCCACTATCTTCCTCTGCAATCCAGGACCCAATTCCAGCTATAAAGAGTTCTTGGATGAAGAGAAGAATTCAGCACTAAAAAATTGGGCATTAAAGAATGCGATCTTCGTCACCCTCGAAGGACCACTCTACTCAAGTTCCAATCAAAGTGCAGCACAGGCTAGCCAAGAAGGGCATCAGGCGTCGTCGCGTTGA
Protein Sequence MTPKRFQINAKNYFFTYPKCSLTKEEALSQMLNTQTQPSKKFIKICREIHEDGAPHLHVLIQFEGKFKCQNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYMEKDGDTLDWGEFQIDGRSARGGQQSANDAYAQAINTGSKSEALRVIKDSHQRIMCYNFIIYMLIYIGFLHLQWRFMFSPFLHLPSIKFQKNLRNGLPRTSSVPLRGPLRPISIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNEAWNNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNSALKNWALKNAIFVTLEGPLYSSSNQSAAQASQEGHQASSR

NCBI Accession QBO66576.1
Location 2159-2452
Gene Name AC4
Protein Name AC4 protein
Coding Region ATGGGGCTCCTCATCTTCACGTGCTTATCCAATTCGAAGGAAAATTCAAGTGCCAAAATAACAGATTCTTCGACCTGGTATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCGAGCTCAGATGTCAAGTCCTATATGGAGAAGGACGGAGACACCCTCGATTGGGGAGAGTTTCAGATCGACGGACGATCTGCACGGGGGGGACAACAGTCAGCCAATGATGCTTACGCCCAAGCCATTAACACAGGCAGTAAGTCAGAGGCTCTTAGAGTCATAA
Protein Sequence MGLLIFTCLSNSKENSSAKITDSSTWYPQPGQHISIRTFRELNRAQMSSPIWRRTETPSIGESFRSTDDLHGGDNSQPMMLTPKPLTQAVSQRLLES