Papaya yellow leaf curl virus
Basic Information
Genomic Organization
JBrowse
Genome
ACCGGATGGCCGCGATTTTTAAATGGCCCGCGCAACGCAAAATCTGACAATGACATGTGGACCAATCACTTTGGCTGGTCGTGGGTTAATTTTTTTGTGGTGGCTTATTTAAAGTTGCTCACCAAGTAGTGCCTCACGTTCACTATGTGGGATCCATTAGTGAACGAGTTTCCCGAAACCGTTCACGGTTTAAGATGTATGTTAGCAGTTAAATATCTGCAGTTAGTAGAGAAGACTTATTCTCCCGATACATTATTGCACGATTTAATTAGGGATTTAATTTCAGTAATTAGGGCTAGAAATTATGTCGAAGCGACCAGCAGATATAATCAATTCCACGCCCGCTTCGAAGGTACGCCGCCGTCTCAACTTCGACAGCCTATATGCGAGCGGTACTGCTGCCCCAATTGTCCGCGTCACAAAGGCAAGGGCATGCGCGAACAGGCCAATGTACAGGAAGCCCAGGATGTACAGGCTGTACAGAAGTCCGGATGTTCCTAGGGGCTGTGAAGGACCATGTAAGGTCCAGTCATTTGAGTTCAGACATGATATACAGCATATTGGTAAAGTTATGTGTGTTAGTGATGTTACTCGTGGTATTGGTTTGACCCACAGGGTTGGCAAGAGGTTCTGTGTGAAATCCGTTTATGTTTTGGGCAAGATCTGGATGGATGAGAACATCAAGACGAAGAATCATACGAATAGTGTTATGTTGTTTCTTCTTCGTGATCGAAGGCCCGTTGACAAGCCTCAAGATTTTGGTGAGGCTTTTAACATGTTTGATAATGAGCCCAGCACGGCGACTGTGAAGAATGTTCATCGTGATAGGTACCAGGTATTAAGGAAGTGGCACGCCACTGTGACAGGCGGTCAGTATGCATCGAAGGAGCAGGCTCTCGTGAAGAAGTTTATTAGGGTTAATAATTATGTTGTGTACAACCAGCAAGAGGCTGGCAAGTATGAGAATCATACTGAGAATGCATTGATGTTGTATATGGCGTGTACGCATGCCTCCAACCCTGTGAATGCTACATTTCAGATACGGATCTACTTCTATGATTCCGTAACAAATTAATAAATATTGAATTTTATTGAATACGACTGTTCTACATAAATTGTTTGATCTAATACATTCCATAATACATGATCAACTGCCCTAATTACATTGTTTATACTGACAACTCCTAAATTATCTAAATACTGCATAACTTGGGTCCTAAAGACCCTTAAGAAACGACCAGTCGGAGGCTGTGAGGTCATCCAGATTCGGAAAGCTATGAAACATTTGTGAATCCCCAACGCTTTCCTCAGGTTGTGATTGAACTGTACTTGTATGGTTATGATGTCGTTGCTCATGAGGACTGGTCGGTTGTGGTGCTCTGTTATCTTGAAATACAGGGGATTTTGAATTTCCCAGGTATACACGCCATTCATTGCCTGAGCTGCAGTGATGGGTTCCCCTGTGCGTGAATCCATAGTTGTGGCAGCGTAATGCGATGAAGTATGAACAGCCACAGTCCAGATCAACGCGACGACGCCTGATGCCCTTCTTGGCTAGCCTGTGCTGCACTTTGATTGGAACTTGAGTAGAGTGGTCCTTCGAGGGTGACGAAGATCGCATTCTTTAATGCCCAATTTTTTAGTGCTGAATTCTTCTCTTCATCCAAGAACTCTTTATAGCTGGAATTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAACTGGCTTTCCGTACTTGGTGTTGCTTTGCCAATCCCTTTGGGCCCCCATGAATTCCTTAAAGTGCTTTAAGTAGTGGGGATCGACGTCATCAATGACGTTGTTCCAGGCCTCATTACTGTACACCTTTGGACTAAGGTCTAAATGACCACACAGATAATTATGTGGTCCCAAAGACCTAGCCCACATTGTTTTCCCTGTCCGACTGTCACCCTCAATCACTATACTTATGGGTCTTAAAGGCCCGCGCAGCGGCACTGACGACGTTCTCGGCAGCCCATTCCTCAAGTTCTTCTGGAACTTGATCGAAGGAAGATGAAGAAAAGGGGAAAACATAAACCTCCATTGGAGGTGCAAAAATCCTATGTAAATTAGCATATAAATTATGAAATTGTAACACATAATCCTTTGGTGCGAATCCTTTATGACTCTAAGAGCCTCTGACTTACTGCCTGTGTTAATGGCTTGGGCGTAAGCATCATTGGCTGACTGTTGTCCCCCCCGTGCAGATCGTCCGTCGATCTGAAACTCTCCCCAATCGAGGGTGTCTCCGTCCTTCTCCATATAGGACTTGACATCTGAGCTCGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGATACCAGGTCGAAGAATCTGTTATTTTGGCACTTGAATTTTCCTTCGAATTGGATAAGCACGTGAAGATGAGGAGCCCCATCTTCGTGTATCTCTCTGCAGATCTTGATGAATTTTTTGGATGGTTGGGTTTGGGTATTTAACATTTGGGAAAGTGCCTCTTCCTTAGTAAGTGAGCACTTAGGATATGTGAAGAAATAATTTTTGGCATTTATTTGAAACCGCTTGGGGGTCATATTGACTTGGTCAGAGGATCGGGTATCTCAGACTGGACTCTATTATCGGTGAATTGGTACTCAATATATAGTGAGACTCAAATGGCAATTTGGTCATTTTGAACAAATTATTCAAGATCCTAAAGCCCCCATCAGCGGCCATCCGTATAATATT
Gene Information
NCBI Accession
|
QBO66572.1
|
Location
|
145-501 |
Gene Name
|
AV2 |
Protein Name
|
pre-coat |
Coding Region
|
ATGTGGGATCCATTAGTGAACGAGTTTCCCGAAACCGTTCACGGTTTAAGATGTATGTTAGCAGTTAAATATCTGCAGTTAGTAGAGAAGACTTATTCTCCCGATACATTATTGCACGATTTAATTAGGGATTTAATTTCAGTAATTAGGGCTAGAAATTATGTCGAAGCGACCAGCAGATATAATCAATTCCACGCCCGCTTCGAAGGTACGCCGCCGTCTCAACTTCGACAGCCTATATGCGAGCGGTACTGCTGCCCCAATTGTCCGCGTCACAAAGGCAAGGGCATGCGCGAACAGGCCAATGTACAGGAAGCCCAGGATGTACAGGCTGTACAGAAGTCCGGATGTTCCTAG |
Protein Sequence
|
MWDPLVNEFPETVHGLRCMLAVKYLQLVEKTYSPDTLLHDLIRDLISVIRARNYVEATSRYNQFHARFEGTPPSQLRQPICERYCCPNCPRHKGKGMREQANVQEAQDVQAVQKSGCS |
NCBI Accession
|
QBO66573.1
|
Location
|
305-1075 |
Gene Name
|
AV1 |
Protein Name
|
coat protein |
Coding Region
|
ATGTCGAAGCGACCAGCAGATATAATCAATTCCACGCCCGCTTCGAAGGTACGCCGCCGTCTCAACTTCGACAGCCTATATGCGAGCGGTACTGCTGCCCCAATTGTCCGCGTCACAAAGGCAAGGGCATGCGCGAACAGGCCAATGTACAGGAAGCCCAGGATGTACAGGCTGTACAGAAGTCCGGATGTTCCTAGGGGCTGTGAAGGACCATGTAAGGTCCAGTCATTTGAGTTCAGACATGATATACAGCATATTGGTAAAGTTATGTGTGTTAGTGATGTTACTCGTGGTATTGGTTTGACCCACAGGGTTGGCAAGAGGTTCTGTGTGAAATCCGTTTATGTTTTGGGCAAGATCTGGATGGATGAGAACATCAAGACGAAGAATCATACGAATAGTGTTATGTTGTTTCTTCTTCGTGATCGAAGGCCCGTTGACAAGCCTCAAGATTTTGGTGAGGCTTTTAACATGTTTGATAATGAGCCCAGCACGGCGACTGTGAAGAATGTTCATCGTGATAGGTACCAGGTATTAAGGAAGTGGCACGCCACTGTGACAGGCGGTCAGTATGCATCGAAGGAGCAGGCTCTCGTGAAGAAGTTTATTAGGGTTAATAATTATGTTGTGTACAACCAGCAAGAGGCTGGCAAGTATGAGAATCATACTGAGAATGCATTGATGTTGTATATGGCGTGTACGCATGCCTCCAACCCTGTGAATGCTACATTTCAGATACGGATCTACTTCTATGATTCCGTAACAAATTAA |
Protein Sequence
|
MSKRPADIINSTPASKVRRRLNFDSLYASGTAAPIVRVTKARACANRPMYRKPRMYRLYRSPDVPRGCEGPCKVQSFEFRHDIQHIGKVMCVSDVTRGIGLTHRVGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMLFLLRDRRPVDKPQDFGEAFNMFDNEPSTATVKNVHRDRYQVLRKWHATVTGGQYASKEQALVKKFIRVNNYVVYNQQEAGKYENHTENALMLYMACTHASNPVNATFQIRIYFYDSVTN |
NCBI Accession
|
QBO66577.1
|
Location
|
530-820 |
Gene Name
|
AC5 |
Protein Name
|
AC5 |
Coding Region
|
ATGAACATTCTTCACAGTCGCCGTGCTGGGCTCATTATCAAACATGTTAAAAGCCTCACCAAAATCTTGAGGCTTGTCAACGGGCCTTCGATCACGAAGAAGAAACAACATAACACTATTCGTATGATTCTTCGTCTTGATGTTCTCATCCATCCAGATCTTGCCCAAAACATAAACGGATTTCACACAGAACCTCTTGCCAACCCTGTGGGTCAAACCAATACCACGAGTAACATCACTAACACACATAACTTTACCAATATGCTGTATATCATGTCTGAACTCAAATGA |
Protein Sequence
|
MNILHSRRAGLIIKHVKSLTKILRLVNGPSITKKKQHNTIRMILRLDVLIHPDLAQNINGFHTEPLANPVGQTNTTSNITNTHNFTNMLYIMSELK |
NCBI Accession
|
QBO66575.1
|
Location
|
1072-1476 |
Gene Name
|
AC3 |
Protein Name
|
replication enhancer protein |
Coding Region
|
ATGGATTCACGCACAGGGGAACCCATCACTGCAGCTCAGGCAATGAATGGCGTGTATACCTGGGAAATTCAAAATCCCCTGTATTTCAAGATAACAGAGCACCACAACCGACCAGTCCTCATGAGCAACGACATCATAACCATACAAGTACAGTTCAATCACAACCTGAGGAAAGCGTTGGGGATTCACAAATGTTTCATAGCTTTCCGAATCTGGATGACCTCACAGCCTCCGACTGGTCGTTTCTTAAGGGTCTTTAGGACCCAAGTTATGCAGTATTTAGATAATTTAGGAGTTGTCAGTATAAACAATGTAATTAGGGCAGTTGATCATGTATTATGGAATGTATTAGATCAAACAATTTATGTAGAACAGTCGTATTCAATAAAATTCAATATTTATTAA |
Protein Sequence
|
MDSRTGEPITAAQAMNGVYTWEIQNPLYFKITEHHNRPVLMSNDIITIQVQFNHNLRKALGIHKCFIAFRIWMTSQPPTGRFLRVFRTQVMQYLDNLGVVSINNVIRAVDHVLWNVLDQTIYVEQSYSIKFNIY |
NCBI Accession
|
QBO66574.1
|
Location
|
1217-1621 |
Gene Name
|
AC2 |
Protein Name
|
transcriptional activator protein |
Coding Region
|
ATGCGATCTTCGTCACCCTCGAAGGACCACTCTACTCAAGTTCCAATCAAAGTGCAGCACAGGCTAGCCAAGAAGGGCATCAGGCGTCGTCGCGTTGATCTGGACTGTGGCTGTTCATACTTCATCGCATTACGCTGCCACAACTATGGATTCACGCACAGGGGAACCCATCACTGCAGCTCAGGCAATGAATGGCGTGTATACCTGGGAAATTCAAAATCCCCTGTATTTCAAGATAACAGAGCACCACAACCGACCAGTCCTCATGAGCAACGACATCATAACCATACAAGTACAGTTCAATCACAACCTGAGGAAAGCGTTGGGGATTCACAAATGTTTCATAGCTTTCCGAATCTGGATGACCTCACAGCCTCCGACTGGTCGTTTCTTAAGGGTCTTTAG |
Protein Sequence
|
MRSSSPSKDHSTQVPIKVQHRLAKKGIRRRRVDLDCGCSYFIALRCHNYGFTHRGTHHCSSGNEWRVYLGNSKSPVFQDNRAPQPTSPHEQRHHNHTSTVQSQPEESVGDSQMFHSFPNLDDLTASDWSFLKGL |
NCBI Accession
|
QBO66578.1
|
Location
|
1524-2606 |
Gene Name
|
AC1 |
Protein Name
|
replication associated protein |
Coding Region
|
ATGACCCCCAAGCGGTTTCAAATAAATGCCAAAAATTATTTCTTCACATATCCTAAGTGCTCACTTACTAAGGAAGAGGCACTTTCCCAAATGTTAAATACCCAAACCCAACCATCCAAAAAATTCATCAAGATCTGCAGAGAGATACACGAAGATGGGGCTCCTCATCTTCACGTGCTTATCCAATTCGAAGGAAAATTCAAGTGCCAAAATAACAGATTCTTCGACCTGGTATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCGAGCTCAGATGTCAAGTCCTATATGGAGAAGGACGGAGACACCCTCGATTGGGGAGAGTTTCAGATCGACGGACGATCTGCACGGGGGGGACAACAGTCAGCCAATGATGCTTACGCCCAAGCCATTAACACAGGCAGTAAGTCAGAGGCTCTTAGAGTCATAAAGGATTCGCACCAAAGGATTATGTGTTACAATTTCATAATTTATATGCTAATTTACATAGGATTTTTGCACCTCCAATGGAGGTTTATGTTTTCCCCTTTTCTTCATCTTCCTTCGATCAAGTTCCAGAAGAACTTGAGGAATGGGCTGCCGAGAACGTCGTCAGTGCCGCTGCGCGGGCCTTTAAGACCCATAAGTATAGTGATTGAGGGTGACAGTCGGACAGGGAAAACAATGTGGGCTAGGTCTTTGGGACCACATAATTATCTGTGTGGTCATTTAGACCTTAGTCCAAAGGTGTACAGTAATGAGGCCTGGAACAACGTCATTGATGACGTCGATCCCCACTACTTAAAGCACTTTAAGGAATTCATGGGGGCCCAAAGGGATTGGCAAAGCAACACCAAGTACGGAAAGCCAGTTCAAATTAAAGGTGGAATTCCCACTATCTTCCTCTGCAATCCAGGACCCAATTCCAGCTATAAAGAGTTCTTGGATGAAGAGAAGAATTCAGCACTAAAAAATTGGGCATTAAAGAATGCGATCTTCGTCACCCTCGAAGGACCACTCTACTCAAGTTCCAATCAAAGTGCAGCACAGGCTAGCCAAGAAGGGCATCAGGCGTCGTCGCGTTGA |
Protein Sequence
|
MTPKRFQINAKNYFFTYPKCSLTKEEALSQMLNTQTQPSKKFIKICREIHEDGAPHLHVLIQFEGKFKCQNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYMEKDGDTLDWGEFQIDGRSARGGQQSANDAYAQAINTGSKSEALRVIKDSHQRIMCYNFIIYMLIYIGFLHLQWRFMFSPFLHLPSIKFQKNLRNGLPRTSSVPLRGPLRPISIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNEAWNNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNSALKNWALKNAIFVTLEGPLYSSSNQSAAQASQEGHQASSR |
NCBI Accession
|
QBO66576.1
|
Location
|
2159-2452 |
Gene Name
|
AC4 |
Protein Name
|
AC4 protein |
Coding Region
|
ATGGGGCTCCTCATCTTCACGTGCTTATCCAATTCGAAGGAAAATTCAAGTGCCAAAATAACAGATTCTTCGACCTGGTATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCGAGCTCAGATGTCAAGTCCTATATGGAGAAGGACGGAGACACCCTCGATTGGGGAGAGTTTCAGATCGACGGACGATCTGCACGGGGGGGACAACAGTCAGCCAATGATGCTTACGCCCAAGCCATTAACACAGGCAGTAAGTCAGAGGCTCTTAGAGTCATAA |
Protein Sequence
|
MGLLIFTCLSNSKENSSAKITDSSTWYPQPGQHISIRTFRELNRAQMSSPIWRRTETPSIGESFRSTDDLHGGDNSQPMMLTPKPLTQAVSQRLLES |