Papaya severe leaf curl virus 2
Basic Information
Genomic Organization
JBrowse
Genome
ACCGGATGGCCGCGATTTTTTTTTTGTGGCCCCAACAAAGCACTAACTGACAATGACAAGTTGACCAATGAGAATCGTTCCTCGTCGCCTAATTGTTTCGGGGTTCCCCCTATAAACTTAGTGCGCAAGTTGTGTTTTCCCTTCACTATGTGGGATCCATTGTTAAACGAGTTTCCCGAAACCGTTCACGGTTTTAGATGTATGTTAGCAGTTAAATATTTGCAGTTAGTAGAAAAGACTTATTCTCCCGATACATTAGGTTACGATTTAATTAGGGATTTAATTTCAGTTATTAGGGCTAGGAACTATGGCGAAGCGACCAGCAGATATCATCATTTCAACGCCCGCATCGAAGGTACGTCGCCGTCTCAACTTCGACAGCCCATATGTGAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACCAAAGCAAAAGCATGGGCGAACAGGCCCATGAACAGAAAGCCCAGGATGTCCGGGATGTACAGAAGTCCAGATGTCCCTAGGGGCTGGGAAGGTCCAGTTAAGGTCCAGTCCTTTGGATGCAGACATGATTTTGATCACATGGGTAAGGCCATTTGTCTTTGTGATGTTACTAGGGGTATTGGGCTGACCCATCGAGTAGCGAAGAGGTTTTGTGTGAAGTCTGTTTATGTGTTGGGTAAAATATGGATGGATGAAAATATAAAGACCAAGAATCACACGAACAATGTGATGTTCTTTCTCGTTCGTGACCGTAGACCAGTTGACAAGCCTCAGGATTTTGGTGAGGTTTTTAACATGTTTGATAATGAGCCCAGCACGGTGACGGTGAAAAATGTGCATCGGGATAGGTACCAGGTGCTCAGGAAGTGGCATGCAACTGTGACAGGGGGTCAATATGCATCGAAGGAGCAGGCTCTCGTGAAGAAGTTTATTAGGGTTAATAATTATGTTGTGTACAACCAACAAGAGGCTGGCAAATATGAGAATCATACTGAGAATGCGTTAATGTTGTATATGGCGTGTACGCACGCCTCTAATCCCGTGTATGCTACATTGAAGATACGGATCTACTTCTATGACTCTGTATCGAATTAATAAATATAGAATTTTATTGAAGATGATTGGTCTAAATATACATCATGTTCTGATACATCGTATAATACATGTTTAAAGGCCCTAACTACATTATTTATACTAATGACTCCTAGATTATCTAAATACTTTAAAACCTGACTCCTAAAGACTCTTAAGAAATGCCCGGTCTGAGGTTGTAAAGCCATGCAGATTCTTAAGCCCAAAAAACACTTCAGTATCCTCAGTTCCTTCCTGAGGTTGTGATTGAACTGGATCTGGAGAGTGATGATGTCGTGGTTCATGGAAAATGGCCTTTGGTCGTGGTCTGAGGACTTGAAATATAGGGGATTTGGGACCTTCCAGATATACACCCCATTCATTTCCTGAGCTGCAGTGATGAGTTCCCCTGTGCGTGAATCCATGATTGTGGCAGGCTGATGGTACGTAGTAAGAGCAACCACCCTCGAGATCAACACTTCGCCGGATGGTCCCCTGCTTGGCTAGCCTGTGTTGGACCTTGATTGGTACCTGAGTACAGTGGCTCTGTGAGGGTGATGAATTTTGCATTCTTTATAGCCCACGCTCTTAGTGCCGAATTCTTGTCCTCGTCCAAGAACTCTTTATAGCTGGAAGTGGACCCAGGATTGCAGAGGAAGATAGTGGGAATGCCCCCTTTAATTTGAACGGGCTTCCCGTACTTGGTGTTGCTTTGCCAGTCTCTTTGGGCCCCCATGAATTCTTTAAAGTGCTCTAGGTAGTGGGGATCGACGTCATCAATGACGTTGTACCAGGCCTCGTTGCTGTAGACCTTTGGACTAAGGTCTAAATGACCACACAGATAATTGTGTGGACCCAGTGACCTGGCCCACATCGTCTTCCCCGTTCTACTATCACCCTCTAAGACAATACTTTTAGATCTCAATGGCCGCGCAGCGGTACCCATCACATTTTCAGCAGCCCATTCCTCTATGGCCTCCGGCACCTGATCGAATGAACAACAAGAAATGGGGGAAACATAAACCTCCACTGGAGGTGTCCAAATCCTATCTAAATTATTTTTTAAATTATGATATTGAAAAATAAAATCTTCCGGGAGTTTCTCCCTAATAATTGCTAAAGCAGCTTCCGCTGAACCTGCATTTAGGGCCTCCGCTGCACCATCACTACCTGTCTGTTGACCTCCACTAGCAAATCGCCCACCGATCTGAAACTCACCCCAGTCGATGTACTCTCCGCCCTTCTGGATGTAGGACTTGACACCTGACCTGCACTTAGCTCCCTGAAACCCGGGGTGGAACTGGCTTGAGGTATTAGGGCGAGCGATTTCAAAATGTCTGTCTTCTCTGAACCGCAATTTCCCTTTGAATTGGATGAAACCCTGGATACGCAGAGACCAATCTTGGTGTTTTTCTTTTGATACTCTGATAAACAATTTATCAAGAGGACAGGTAATGTTTTTAAATAGTTCGAGCATTTGCTCTTTGCGTATTGGGCATTTGGGATAAGTAAGGAAGATATTTTCGGCATTTATACAGAAGGAGTTATTACGACGCATATTGGATTGGAGACATTCAAAACTCTGAGGAATCCGGGACTCCCGGGACGCAATTATATGGTGTCCCCAAATGGCAATTTGGTAATTCAGAAAGAAATTTCAAAATCTCCACGCTCCAAACCGCGGCCATCCGTATAATATT
Gene Information
NCBI Accession
|
QBP05521.1
|
Location
|
148-504 |
Gene Name
|
AV2 |
Protein Name
|
pre-coat |
Coding Region
|
ATGTGGGATCCATTGTTAAACGAGTTTCCCGAAACCGTTCACGGTTTTAGATGTATGTTAGCAGTTAAATATTTGCAGTTAGTAGAAAAGACTTATTCTCCCGATACATTAGGTTACGATTTAATTAGGGATTTAATTTCAGTTATTAGGGCTAGGAACTATGGCGAAGCGACCAGCAGATATCATCATTTCAACGCCCGCATCGAAGGTACGTCGCCGTCTCAACTTCGACAGCCCATATGTGAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACCAAAGCAAAAGCATGGGCGAACAGGCCCATGAACAGAAAGCCCAGGATGTCCGGGATGTACAGAAGTCCAGATGTCCCTAG |
Protein Sequence
|
MWDPLLNEFPETVHGFRCMLAVKYLQLVEKTYSPDTLGYDLIRDLISVIRARNYGEATSRYHHFNARIEGTSPSQLRQPICEPCCCPHCPRHQSKSMGEQAHEQKAQDVRDVQKSRCP |
NCBI Accession
|
QBP05522.1
|
Location
|
308-1078 |
Gene Name
|
AV1 |
Protein Name
|
coat protein |
Coding Region
|
ATGGCGAAGCGACCAGCAGATATCATCATTTCAACGCCCGCATCGAAGGTACGTCGCCGTCTCAACTTCGACAGCCCATATGTGAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACCAAAGCAAAAGCATGGGCGAACAGGCCCATGAACAGAAAGCCCAGGATGTCCGGGATGTACAGAAGTCCAGATGTCCCTAGGGGCTGGGAAGGTCCAGTTAAGGTCCAGTCCTTTGGATGCAGACATGATTTTGATCACATGGGTAAGGCCATTTGTCTTTGTGATGTTACTAGGGGTATTGGGCTGACCCATCGAGTAGCGAAGAGGTTTTGTGTGAAGTCTGTTTATGTGTTGGGTAAAATATGGATGGATGAAAATATAAAGACCAAGAATCACACGAACAATGTGATGTTCTTTCTCGTTCGTGACCGTAGACCAGTTGACAAGCCTCAGGATTTTGGTGAGGTTTTTAACATGTTTGATAATGAGCCCAGCACGGTGACGGTGAAAAATGTGCATCGGGATAGGTACCAGGTGCTCAGGAAGTGGCATGCAACTGTGACAGGGGGTCAATATGCATCGAAGGAGCAGGCTCTCGTGAAGAAGTTTATTAGGGTTAATAATTATGTTGTGTACAACCAACAAGAGGCTGGCAAATATGAGAATCATACTGAGAATGCGTTAATGTTGTATATGGCGTGTACGCACGCCTCTAATCCCGTGTATGCTACATTGAAGATACGGATCTACTTCTATGACTCTGTATCGAATTAA |
Protein Sequence
|
MAKRPADIIISTPASKVRRRLNFDSPYVSRAAAPIVRVTKAKAWANRPMNRKPRMSGMYRSPDVPRGWEGPVKVQSFGCRHDFDHMGKAICLCDVTRGIGLTHRVAKRFCVKSVYVLGKIWMDENIKTKNHTNNVMFFLVRDRRPVDKPQDFGEVFNMFDNEPSTVTVKNVHRDRYQVLRKWHATVTGGQYASKEQALVKKFIRVNNYVVYNQQEAGKYENHTENALMLYMACTHASNPVYATLKIRIYFYDSVSN |
NCBI Accession
|
QBP05527.1
|
Location
|
338-973 |
Gene Name
|
AC5 |
Protein Name
|
AC5 |
Coding Region
|
ATGATTCTCATATTTGCCAGCCTCTTGTTGGTTGTACACAACATAATTATTAACCCTAATAAACTTCTTCACGAGAGCCTGCTCCTTCGATGCATATTGACCCCCTGTCACAGTTGCATGCCACTTCCTGAGCACCTGGTACCTATCCCGATGCACATTTTTCACCGTCACCGTGCTGGGCTCATTATCAAACATGTTAAAAACCTCACCAAAATCCTGAGGCTTGTCAACTGGTCTACGGTCACGAACGAGAAAGAACATCACATTGTTCGTGTGATTCTTGGTCTTTATATTTTCATCCATCCATATTTTACCCAACACATAAACAGACTTCACACAAAACCTCTTCGCTACTCGATGGGTCAGCCCAATACCCCTAGTAACATCACAAAGACAAATGGCCTTACCCATGTGATCAAAATCATGTCTGCATCCAAAGGACTGGACCTTAACTGGACCTTCCCAGCCCCTAGGGACATCTGGACTTCTGTACATCCCGGACATCCTGGGCTTTCTGTTCATGGGCCTGTTCGCCCATGCTTTTGCTTTGGTGACGCGGACAATGGGGGCAGCAGCACGGCTCACATATGGGCTGTCGAAGTTGAGACGGCGACGTACCTTCGATGCGGGCGTTGA |
Protein Sequence
|
MILIFASLLLVVHNIIINPNKLLHESLLLRCILTPCHSCMPLPEHLVPIPMHIFHRHRAGLIIKHVKNLTKILRLVNWSTVTNEKEHHIVRVILGLYIFIHPYFTQHINRLHTKPLRYSMGQPNTPSNITKTNGLTHVIKIMSASKGLDLNWTFPAPRDIWTSVHPGHPGLSVHGPVRPCFCFGDADNGGSSTAHIWAVEVETATYLRCGR |
NCBI Accession
|
QBP05525.1
|
Location
|
1075-1479 |
Gene Name
|
AC3 |
Protein Name
|
replication enhancer protein |
Coding Region
|
ATGGATTCACGCACAGGGGAACTCATCACTGCAGCTCAGGAAATGAATGGGGTGTATATCTGGAAGGTCCCAAATCCCCTATATTTCAAGTCCTCAGACCACGACCAAAGGCCATTTTCCATGAACCACGACATCATCACTCTCCAGATCCAGTTCAATCACAACCTCAGGAAGGAACTGAGGATACTGAAGTGTTTTTTGGGCTTAAGAATCTGCATGGCTTTACAACCTCAGACCGGGCATTTCTTAAGAGTCTTTAGGAGTCAGGTTTTAAAGTATTTAGATAATCTAGGAGTCATTAGTATAAATAATGTAGTTAGGGCCTTTAAACATGTATTATACGATGTATCAGAACATGATGTATATTTAGACCAATCATCTTCAATAAAATTCTATATTTATTAA |
Protein Sequence
|
MDSRTGELITAAQEMNGVYIWKVPNPLYFKSSDHDQRPFSMNHDIITLQIQFNHNLRKELRILKCFLGLRICMALQPQTGHFLRVFRSQVLKYLDNLGVISINNVVRAFKHVLYDVSEHDVYLDQSSSIKFYIY |
NCBI Accession
|
QBP05524.1
|
Location
|
1220-1624 |
Gene Name
|
AC2 |
Protein Name
|
transcriptional activator protein |
Coding Region
|
ATGCAAAATTCATCACCCTCACAGAGCCACTGTACTCAGGTACCAATCAAGGTCCAACACAGGCTAGCCAAGCAGGGGACCATCCGGCGAAGTGTTGATCTCGAGGGTGGTTGCTCTTACTACGTACCATCAGCCTGCCACAATCATGGATTCACGCACAGGGGAACTCATCACTGCAGCTCAGGAAATGAATGGGGTGTATATCTGGAAGGTCCCAAATCCCCTATATTTCAAGTCCTCAGACCACGACCAAAGGCCATTTTCCATGAACCACGACATCATCACTCTCCAGATCCAGTTCAATCACAACCTCAGGAAGGAACTGAGGATACTGAAGTGTTTTTTGGGCTTAAGAATCTGCATGGCTTTACAACCTCAGACCGGGCATTTCTTAAGAGTCTTTAG |
Protein Sequence
|
MQNSSPSQSHCTQVPIKVQHRLAKQGTIRRSVDLEGGCSYYVPSACHNHGFTHRGTHHCSSGNEWGVYLEGPKSPIFQVLRPRPKAIFHEPRHHHSPDPVQSQPQEGTEDTEVFFGLKNLHGFTTSDRAFLKSL |
NCBI Accession
|
QBP05523.1
|
Location
|
1527-2612 |
Gene Name
|
AC1 |
Protein Name
|
replication associated protein |
Coding Region
|
ATGCGTCGTAATAACTCCTTCTGTATAAATGCCGAAAATATCTTCCTTACTTATCCCAAATGCCCAATACGCAAAGAGCAAATGCTCGAACTATTTAAAAACATTACCTGTCCTCTTGATAAATTGTTTATCAGAGTATCAAAAGAAAAACACCAAGATTGGTCTCTGCGTATCCAGGGTTTCATCCAATTCAAAGGGAAATTGCGGTTCAGAGAAGACAGACATTTTGAAATCGCTCGCCCTAATACCTCAAGCCAGTTCCACCCCGGGTTTCAGGGAGCTAAGTGCAGGTCAGGTGTCAAGTCCTACATCCAGAAGGGCGGAGAGTACATCGACTGGGGTGAGTTTCAGATCGGTGGGCGATTTGCTAGTGGAGGTCAACAGACAGGTAGTGATGGTGCAGCGGAGGCCCTAAATGCAGGTTCAGCGGAAGCTGCTTTAGCAATTATTAGGGAGAAACTCCCGGAAGATTTTATTTTTCAATATCATAATTTAAAAAATAATTTAGATAGGATTTGGACACCTCCAGTGGAGGTTTATGTTTCCCCCATTTCTTGTTGTTCATTCGATCAGGTGCCGGAGGCCATAGAGGAATGGGCTGCTGAAAATGTGATGGGTACCGCTGCGCGGCCATTGAGATCTAAAAGTATTGTCTTAGAGGGTGATAGTAGAACGGGGAAGACGATGTGGGCCAGGTCACTGGGTCCACACAATTATCTGTGTGGTCATTTAGACCTTAGTCCAAAGGTCTACAGCAACGAGGCCTGGTACAACGTCATTGATGACGTCGATCCCCACTACCTAGAGCACTTTAAAGAATTCATGGGGGCCCAAAGAGACTGGCAAAGCAACACCAAGTACGGGAAGCCCGTTCAAATTAAAGGGGGCATTCCCACTATCTTCCTCTGCAATCCTGGGTCCACTTCCAGCTATAAAGAGTTCTTGGACGAGGACAAGAATTCGGCACTAAGAGCGTGGGCTATAAAGAATGCAAAATTCATCACCCTCACAGAGCCACTGTACTCAGGTACCAATCAAGGTCCAACACAGGCTAGCCAAGCAGGGGACCATCCGGCGAAGTGTTGA |
Protein Sequence
|
MRRNNSFCINAENIFLTYPKCPIRKEQMLELFKNITCPLDKLFIRVSKEKHQDWSLRIQGFIQFKGKLRFREDRHFEIARPNTSSQFHPGFQGAKCRSGVKSYIQKGGEYIDWGEFQIGGRFASGGQQTGSDGAAEALNAGSAEAALAIIREKLPEDFIFQYHNLKNNLDRIWTPPVEVYVSPISCCSFDQVPEAIEEWAAENVMGTAARPLRSKSIVLEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNEAWYNVIDDVDPHYLEHFKEFMGAQRDWQSNTKYGKPVQIKGGIPTIFLCNPGSTSSYKEFLDEDKNSALRAWAIKNAKFITLTEPLYSGTNQGPTQASQAGDHPAKC |
NCBI Accession
|
QBP05526.1
|
Location
|
2198-2584 |
Gene Name
|
AC4 |
Protein Name
|
AC4 protein |
Coding Region
|
ATGCCGAAAATATCTTCCTTACTTATCCCAAATGCCCAATACGCAAAGAGCAAATGCTCGAACTATTTAAAAACATTACCTGTCCTCTTGATAAATTGTTTATCAGAGTATCAAAAGAAAAACACCAAGATTGGTCTCTGCGTATCCAGGGTTTCATCCAATTCAAAGGGAAATTGCGGTTCAGAGAAGACAGACATTTTGAAATCGCTCGCCCTAATACCTCAAGCCAGTTCCACCCCGGGTTTCAGGGAGCTAAGTGCAGGTCAGGTGTCAAGTCCTACATCCAGAAGGGCGGAGAGTACATCGACTGGGGTGAGTTTCAGATCGGTGGGCGATTTGCTAGTGGAGGTCAACAGACAGGTAGTGATGGTGCAGCGGAGGCCCTAA |
Protein Sequence
|
MPKISSLLIPNAQYAKSKCSNYLKTLPVLLINCLSEYQKKNTKIGLCVSRVSSNSKGNCGSEKTDILKSLALIPQASSTPGFRELSAGQVSSPTSRRAESTSTGVSFRSVGDLLVEVNRQVVMVQRRP |