Papaya severe leaf curl virus 2


Basic Information

Genus Begomovirus
Isolate India
Vector
Download Genome |GFF3 |PEP |CDS

Genomic Organization


JBrowse


Genome

MH988458
ACCGGATGGCCGCGATTTTTTTTTTGTGGCCCCAACAAAGCACTAACTGACAATGACAAGTTGACCAATGAGAATCGTTCCTCGTCGCCTAATTGTTTCGGGGTTCCCCCTATAAACTTAGTGCGCAAGTTGTGTTTTCCCTTCACTATGTGGGATCCATTGTTAAACGAGTTTCCCGAAACCGTTCACGGTTTTAGATGTATGTTAGCAGTTAAATATTTGCAGTTAGTAGAAAAGACTTATTCTCCCGATACATTAGGTTACGATTTAATTAGGGATTTAATTTCAGTTATTAGGGCTAGGAACTATGGCGAAGCGACCAGCAGATATCATCATTTCAACGCCCGCATCGAAGGTACGTCGCCGTCTCAACTTCGACAGCCCATATGTGAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACCAAAGCAAAAGCATGGGCGAACAGGCCCATGAACAGAAAGCCCAGGATGTCCGGGATGTACAGAAGTCCAGATGTCCCTAGGGGCTGGGAAGGTCCAGTTAAGGTCCAGTCCTTTGGATGCAGACATGATTTTGATCACATGGGTAAGGCCATTTGTCTTTGTGATGTTACTAGGGGTATTGGGCTGACCCATCGAGTAGCGAAGAGGTTTTGTGTGAAGTCTGTTTATGTGTTGGGTAAAATATGGATGGATGAAAATATAAAGACCAAGAATCACACGAACAATGTGATGTTCTTTCTCGTTCGTGACCGTAGACCAGTTGACAAGCCTCAGGATTTTGGTGAGGTTTTTAACATGTTTGATAATGAGCCCAGCACGGTGACGGTGAAAAATGTGCATCGGGATAGGTACCAGGTGCTCAGGAAGTGGCATGCAACTGTGACAGGGGGTCAATATGCATCGAAGGAGCAGGCTCTCGTGAAGAAGTTTATTAGGGTTAATAATTATGTTGTGTACAACCAACAAGAGGCTGGCAAATATGAGAATCATACTGAGAATGCGTTAATGTTGTATATGGCGTGTACGCACGCCTCTAATCCCGTGTATGCTACATTGAAGATACGGATCTACTTCTATGACTCTGTATCGAATTAATAAATATAGAATTTTATTGAAGATGATTGGTCTAAATATACATCATGTTCTGATACATCGTATAATACATGTTTAAAGGCCCTAACTACATTATTTATACTAATGACTCCTAGATTATCTAAATACTTTAAAACCTGACTCCTAAAGACTCTTAAGAAATGCCCGGTCTGAGGTTGTAAAGCCATGCAGATTCTTAAGCCCAAAAAACACTTCAGTATCCTCAGTTCCTTCCTGAGGTTGTGATTGAACTGGATCTGGAGAGTGATGATGTCGTGGTTCATGGAAAATGGCCTTTGGTCGTGGTCTGAGGACTTGAAATATAGGGGATTTGGGACCTTCCAGATATACACCCCATTCATTTCCTGAGCTGCAGTGATGAGTTCCCCTGTGCGTGAATCCATGATTGTGGCAGGCTGATGGTACGTAGTAAGAGCAACCACCCTCGAGATCAACACTTCGCCGGATGGTCCCCTGCTTGGCTAGCCTGTGTTGGACCTTGATTGGTACCTGAGTACAGTGGCTCTGTGAGGGTGATGAATTTTGCATTCTTTATAGCCCACGCTCTTAGTGCCGAATTCTTGTCCTCGTCCAAGAACTCTTTATAGCTGGAAGTGGACCCAGGATTGCAGAGGAAGATAGTGGGAATGCCCCCTTTAATTTGAACGGGCTTCCCGTACTTGGTGTTGCTTTGCCAGTCTCTTTGGGCCCCCATGAATTCTTTAAAGTGCTCTAGGTAGTGGGGATCGACGTCATCAATGACGTTGTACCAGGCCTCGTTGCTGTAGACCTTTGGACTAAGGTCTAAATGACCACACAGATAATTGTGTGGACCCAGTGACCTGGCCCACATCGTCTTCCCCGTTCTACTATCACCCTCTAAGACAATACTTTTAGATCTCAATGGCCGCGCAGCGGTACCCATCACATTTTCAGCAGCCCATTCCTCTATGGCCTCCGGCACCTGATCGAATGAACAACAAGAAATGGGGGAAACATAAACCTCCACTGGAGGTGTCCAAATCCTATCTAAATTATTTTTTAAATTATGATATTGAAAAATAAAATCTTCCGGGAGTTTCTCCCTAATAATTGCTAAAGCAGCTTCCGCTGAACCTGCATTTAGGGCCTCCGCTGCACCATCACTACCTGTCTGTTGACCTCCACTAGCAAATCGCCCACCGATCTGAAACTCACCCCAGTCGATGTACTCTCCGCCCTTCTGGATGTAGGACTTGACACCTGACCTGCACTTAGCTCCCTGAAACCCGGGGTGGAACTGGCTTGAGGTATTAGGGCGAGCGATTTCAAAATGTCTGTCTTCTCTGAACCGCAATTTCCCTTTGAATTGGATGAAACCCTGGATACGCAGAGACCAATCTTGGTGTTTTTCTTTTGATACTCTGATAAACAATTTATCAAGAGGACAGGTAATGTTTTTAAATAGTTCGAGCATTTGCTCTTTGCGTATTGGGCATTTGGGATAAGTAAGGAAGATATTTTCGGCATTTATACAGAAGGAGTTATTACGACGCATATTGGATTGGAGACATTCAAAACTCTGAGGAATCCGGGACTCCCGGGACGCAATTATATGGTGTCCCCAAATGGCAATTTGGTAATTCAGAAAGAAATTTCAAAATCTCCACGCTCCAAACCGCGGCCATCCGTATAATATT

Gene Information

NCBI Accession QBP05521.1
Location 148-504
Gene Name AV2
Protein Name pre-coat
Coding Region ATGTGGGATCCATTGTTAAACGAGTTTCCCGAAACCGTTCACGGTTTTAGATGTATGTTAGCAGTTAAATATTTGCAGTTAGTAGAAAAGACTTATTCTCCCGATACATTAGGTTACGATTTAATTAGGGATTTAATTTCAGTTATTAGGGCTAGGAACTATGGCGAAGCGACCAGCAGATATCATCATTTCAACGCCCGCATCGAAGGTACGTCGCCGTCTCAACTTCGACAGCCCATATGTGAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACCAAAGCAAAAGCATGGGCGAACAGGCCCATGAACAGAAAGCCCAGGATGTCCGGGATGTACAGAAGTCCAGATGTCCCTAG
Protein Sequence MWDPLLNEFPETVHGFRCMLAVKYLQLVEKTYSPDTLGYDLIRDLISVIRARNYGEATSRYHHFNARIEGTSPSQLRQPICEPCCCPHCPRHQSKSMGEQAHEQKAQDVRDVQKSRCP

NCBI Accession QBP05522.1
Location 308-1078
Gene Name AV1
Protein Name coat protein
Coding Region ATGGCGAAGCGACCAGCAGATATCATCATTTCAACGCCCGCATCGAAGGTACGTCGCCGTCTCAACTTCGACAGCCCATATGTGAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACCAAAGCAAAAGCATGGGCGAACAGGCCCATGAACAGAAAGCCCAGGATGTCCGGGATGTACAGAAGTCCAGATGTCCCTAGGGGCTGGGAAGGTCCAGTTAAGGTCCAGTCCTTTGGATGCAGACATGATTTTGATCACATGGGTAAGGCCATTTGTCTTTGTGATGTTACTAGGGGTATTGGGCTGACCCATCGAGTAGCGAAGAGGTTTTGTGTGAAGTCTGTTTATGTGTTGGGTAAAATATGGATGGATGAAAATATAAAGACCAAGAATCACACGAACAATGTGATGTTCTTTCTCGTTCGTGACCGTAGACCAGTTGACAAGCCTCAGGATTTTGGTGAGGTTTTTAACATGTTTGATAATGAGCCCAGCACGGTGACGGTGAAAAATGTGCATCGGGATAGGTACCAGGTGCTCAGGAAGTGGCATGCAACTGTGACAGGGGGTCAATATGCATCGAAGGAGCAGGCTCTCGTGAAGAAGTTTATTAGGGTTAATAATTATGTTGTGTACAACCAACAAGAGGCTGGCAAATATGAGAATCATACTGAGAATGCGTTAATGTTGTATATGGCGTGTACGCACGCCTCTAATCCCGTGTATGCTACATTGAAGATACGGATCTACTTCTATGACTCTGTATCGAATTAA
Protein Sequence MAKRPADIIISTPASKVRRRLNFDSPYVSRAAAPIVRVTKAKAWANRPMNRKPRMSGMYRSPDVPRGWEGPVKVQSFGCRHDFDHMGKAICLCDVTRGIGLTHRVAKRFCVKSVYVLGKIWMDENIKTKNHTNNVMFFLVRDRRPVDKPQDFGEVFNMFDNEPSTVTVKNVHRDRYQVLRKWHATVTGGQYASKEQALVKKFIRVNNYVVYNQQEAGKYENHTENALMLYMACTHASNPVYATLKIRIYFYDSVSN

NCBI Accession QBP05527.1
Location 338-973
Gene Name AC5
Protein Name AC5
Coding Region ATGATTCTCATATTTGCCAGCCTCTTGTTGGTTGTACACAACATAATTATTAACCCTAATAAACTTCTTCACGAGAGCCTGCTCCTTCGATGCATATTGACCCCCTGTCACAGTTGCATGCCACTTCCTGAGCACCTGGTACCTATCCCGATGCACATTTTTCACCGTCACCGTGCTGGGCTCATTATCAAACATGTTAAAAACCTCACCAAAATCCTGAGGCTTGTCAACTGGTCTACGGTCACGAACGAGAAAGAACATCACATTGTTCGTGTGATTCTTGGTCTTTATATTTTCATCCATCCATATTTTACCCAACACATAAACAGACTTCACACAAAACCTCTTCGCTACTCGATGGGTCAGCCCAATACCCCTAGTAACATCACAAAGACAAATGGCCTTACCCATGTGATCAAAATCATGTCTGCATCCAAAGGACTGGACCTTAACTGGACCTTCCCAGCCCCTAGGGACATCTGGACTTCTGTACATCCCGGACATCCTGGGCTTTCTGTTCATGGGCCTGTTCGCCCATGCTTTTGCTTTGGTGACGCGGACAATGGGGGCAGCAGCACGGCTCACATATGGGCTGTCGAAGTTGAGACGGCGACGTACCTTCGATGCGGGCGTTGA
Protein Sequence MILIFASLLLVVHNIIINPNKLLHESLLLRCILTPCHSCMPLPEHLVPIPMHIFHRHRAGLIIKHVKNLTKILRLVNWSTVTNEKEHHIVRVILGLYIFIHPYFTQHINRLHTKPLRYSMGQPNTPSNITKTNGLTHVIKIMSASKGLDLNWTFPAPRDIWTSVHPGHPGLSVHGPVRPCFCFGDADNGGSSTAHIWAVEVETATYLRCGR

NCBI Accession QBP05525.1
Location 1075-1479
Gene Name AC3
Protein Name replication enhancer protein
Coding Region ATGGATTCACGCACAGGGGAACTCATCACTGCAGCTCAGGAAATGAATGGGGTGTATATCTGGAAGGTCCCAAATCCCCTATATTTCAAGTCCTCAGACCACGACCAAAGGCCATTTTCCATGAACCACGACATCATCACTCTCCAGATCCAGTTCAATCACAACCTCAGGAAGGAACTGAGGATACTGAAGTGTTTTTTGGGCTTAAGAATCTGCATGGCTTTACAACCTCAGACCGGGCATTTCTTAAGAGTCTTTAGGAGTCAGGTTTTAAAGTATTTAGATAATCTAGGAGTCATTAGTATAAATAATGTAGTTAGGGCCTTTAAACATGTATTATACGATGTATCAGAACATGATGTATATTTAGACCAATCATCTTCAATAAAATTCTATATTTATTAA
Protein Sequence MDSRTGELITAAQEMNGVYIWKVPNPLYFKSSDHDQRPFSMNHDIITLQIQFNHNLRKELRILKCFLGLRICMALQPQTGHFLRVFRSQVLKYLDNLGVISINNVVRAFKHVLYDVSEHDVYLDQSSSIKFYIY

NCBI Accession QBP05524.1
Location 1220-1624
Gene Name AC2
Protein Name transcriptional activator protein
Coding Region ATGCAAAATTCATCACCCTCACAGAGCCACTGTACTCAGGTACCAATCAAGGTCCAACACAGGCTAGCCAAGCAGGGGACCATCCGGCGAAGTGTTGATCTCGAGGGTGGTTGCTCTTACTACGTACCATCAGCCTGCCACAATCATGGATTCACGCACAGGGGAACTCATCACTGCAGCTCAGGAAATGAATGGGGTGTATATCTGGAAGGTCCCAAATCCCCTATATTTCAAGTCCTCAGACCACGACCAAAGGCCATTTTCCATGAACCACGACATCATCACTCTCCAGATCCAGTTCAATCACAACCTCAGGAAGGAACTGAGGATACTGAAGTGTTTTTTGGGCTTAAGAATCTGCATGGCTTTACAACCTCAGACCGGGCATTTCTTAAGAGTCTTTAG
Protein Sequence MQNSSPSQSHCTQVPIKVQHRLAKQGTIRRSVDLEGGCSYYVPSACHNHGFTHRGTHHCSSGNEWGVYLEGPKSPIFQVLRPRPKAIFHEPRHHHSPDPVQSQPQEGTEDTEVFFGLKNLHGFTTSDRAFLKSL

NCBI Accession QBP05523.1
Location 1527-2612
Gene Name AC1
Protein Name replication associated protein
Coding Region ATGCGTCGTAATAACTCCTTCTGTATAAATGCCGAAAATATCTTCCTTACTTATCCCAAATGCCCAATACGCAAAGAGCAAATGCTCGAACTATTTAAAAACATTACCTGTCCTCTTGATAAATTGTTTATCAGAGTATCAAAAGAAAAACACCAAGATTGGTCTCTGCGTATCCAGGGTTTCATCCAATTCAAAGGGAAATTGCGGTTCAGAGAAGACAGACATTTTGAAATCGCTCGCCCTAATACCTCAAGCCAGTTCCACCCCGGGTTTCAGGGAGCTAAGTGCAGGTCAGGTGTCAAGTCCTACATCCAGAAGGGCGGAGAGTACATCGACTGGGGTGAGTTTCAGATCGGTGGGCGATTTGCTAGTGGAGGTCAACAGACAGGTAGTGATGGTGCAGCGGAGGCCCTAAATGCAGGTTCAGCGGAAGCTGCTTTAGCAATTATTAGGGAGAAACTCCCGGAAGATTTTATTTTTCAATATCATAATTTAAAAAATAATTTAGATAGGATTTGGACACCTCCAGTGGAGGTTTATGTTTCCCCCATTTCTTGTTGTTCATTCGATCAGGTGCCGGAGGCCATAGAGGAATGGGCTGCTGAAAATGTGATGGGTACCGCTGCGCGGCCATTGAGATCTAAAAGTATTGTCTTAGAGGGTGATAGTAGAACGGGGAAGACGATGTGGGCCAGGTCACTGGGTCCACACAATTATCTGTGTGGTCATTTAGACCTTAGTCCAAAGGTCTACAGCAACGAGGCCTGGTACAACGTCATTGATGACGTCGATCCCCACTACCTAGAGCACTTTAAAGAATTCATGGGGGCCCAAAGAGACTGGCAAAGCAACACCAAGTACGGGAAGCCCGTTCAAATTAAAGGGGGCATTCCCACTATCTTCCTCTGCAATCCTGGGTCCACTTCCAGCTATAAAGAGTTCTTGGACGAGGACAAGAATTCGGCACTAAGAGCGTGGGCTATAAAGAATGCAAAATTCATCACCCTCACAGAGCCACTGTACTCAGGTACCAATCAAGGTCCAACACAGGCTAGCCAAGCAGGGGACCATCCGGCGAAGTGTTGA
Protein Sequence MRRNNSFCINAENIFLTYPKCPIRKEQMLELFKNITCPLDKLFIRVSKEKHQDWSLRIQGFIQFKGKLRFREDRHFEIARPNTSSQFHPGFQGAKCRSGVKSYIQKGGEYIDWGEFQIGGRFASGGQQTGSDGAAEALNAGSAEAALAIIREKLPEDFIFQYHNLKNNLDRIWTPPVEVYVSPISCCSFDQVPEAIEEWAAENVMGTAARPLRSKSIVLEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNEAWYNVIDDVDPHYLEHFKEFMGAQRDWQSNTKYGKPVQIKGGIPTIFLCNPGSTSSYKEFLDEDKNSALRAWAIKNAKFITLTEPLYSGTNQGPTQASQAGDHPAKC

NCBI Accession QBP05526.1
Location 2198-2584
Gene Name AC4
Protein Name AC4 protein
Coding Region ATGCCGAAAATATCTTCCTTACTTATCCCAAATGCCCAATACGCAAAGAGCAAATGCTCGAACTATTTAAAAACATTACCTGTCCTCTTGATAAATTGTTTATCAGAGTATCAAAAGAAAAACACCAAGATTGGTCTCTGCGTATCCAGGGTTTCATCCAATTCAAAGGGAAATTGCGGTTCAGAGAAGACAGACATTTTGAAATCGCTCGCCCTAATACCTCAAGCCAGTTCCACCCCGGGTTTCAGGGAGCTAAGTGCAGGTCAGGTGTCAAGTCCTACATCCAGAAGGGCGGAGAGTACATCGACTGGGGTGAGTTTCAGATCGGTGGGCGATTTGCTAGTGGAGGTCAACAGACAGGTAGTGATGGTGCAGCGGAGGCCCTAA
Protein Sequence MPKISSLLIPNAQYAKSKCSNYLKTLPVLLINCLSEYQKKNTKIGLCVSRVSSNSKGNCGSEKTDILKSLALIPQASSTPGFRELSAGQVSSPTSRRAESTSTGVSFRSVGDLLVEVNRQVVMVQRRP