Papaya severe leaf curl virus 1


Basic Information

Genus Begomovirus
Isolate India
Vector
Download Genome |GFF3 |PEP |CDS

Genomic Organization


JBrowse


Genome

MH988457
ACCGGATGGCCGCGATTTTTTTCTAGTGGGCCCCACAACGCACGTGCTGACAAGGACAAACGGACCAATGAAATTGGCTCCTCGTTGCTTAATTATTTAATGGTCCCTCCTATAAACTTAGTGCGCAAGTTGTGCACGCTTACCAATGTGGGATCCATTAGTAAACGAGTTTCCCGAAACCGTTCACGGTTTTCGATGTATGCTAGCAGTTAAATATATGCAGCTCGTAGACAATACGTATTCTCCAGAGACTTTGGGGTACGATTTAATTAGGGATTTAATATCAGTAATAAGGGCCAGGAATTATGTCGAAGCGACCAGCAGATATAATCATTTCCACGCCCGCTTCGAAGGTACGTCGCCGTCTCAACTTCGACAGCCCATATGCGAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACCAAAGCAAGGGCATGGGCGAACAGGCCCATGAACAGGATGCCAAGGATGTACAGGATGTACAGAAGCCCAGATGTTCCTAGAGGATGTGAAGGCCCATGTAAGGTCCAGTCATTTGAGTCTAGACATGATGTCCAGCACATTGGTAAAGTCATGTGTGTTAGTGATGTTATTCGTGGAACTGGGTTGACTCCCCGAGTCGGCAAAAGGTTTTGTGTGAAGTCCGTTTATGTTCTGGGCAAGATCTGGATGGATGAGAACATCAAGACCAAGAATCATACGAATAGTGTTATGTTTTTCCTTGTTAGGGATCGTAGGCCCGTTGATAAGCCCCAAGATTTTGGTGAGGTTTTTAATATGTTTGATAATGAGCCCAGTACGGGGACAGTGAAGAAGGTGCATCGTGATAGGTACCAGGTGCTCAGGAAGTGGCACGCCACTGTGACAGGCGGTCAATATGCATGGAAGGAGCAGGTTTTCGTGAAGAAGTTAATTAGGGTTACTAATTTTGTTGTGTATAACCACAAAGAGGCTGGCAAGTATGAGAACCATACTGAGAATGCATTGATGTTGTATATGGCATGTACCCCTGCCTCTAACCCTGTGTATGCTACCTTGAAGATACGGACCTATTTCTATGACTCACTAACAAATTAATAAATATAGAATTTTATTATGTTTGATGGTCCTACATACATTGTTTGTGCTAATACATTCCATAATACATGATCAACTGCTCTAAGTACATTATTTATACTAATGACAGCTAAATTATCTAAATACTGCAGAACTTGGGTCCTAAAGACCCTTAAGAAACGACCAGTCCGAGGTTGTAAGGTCGTCCAGATTCGGAAGGCTAGGAAACAATTGTGTATCCTCAGCTCTTTCCTGAGGTTGTGATTGAATTGTATCTGTACGGTTATGATGTCGTCCTTCATTAGGAATGGCCGGTTGTCGTGCTCTGTTATCTTGAAATATAGGGGATTTGTTATTTCCCAGATATACACCCCATTCTCGGCCTGAGCTGCAGTGATGAGTTCCCCTGTGCGTGAATCCATGATTGTGGCAGCGTAGTGAGATGAAATAAGAGCAGCCGCAGTGTAGGTCAACGCTCCGACGCCTGATCCCCTTCTTGGCTAGCCTGTGCTGGACCTTGATTGGTACCTGAGTACAGTGGGCCTTCGAGGGTGATGAAGGTCGCATTCTTTATAGCCCAATTTCTGAGTGCCGAATTCTTCTCCTCATCCAAGTATTCTTTATAGCTGGAATTTGGTCCAGAATTGCAGAGGAAGATAGTGGGAATACCACCTTTAATTTGAACTGGCTTCCCGTACTTGGTGTTGCTTTGCCAGTCTCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGGTAGTGGGGGTCGACGTCATCAATGACGTTGTACCACTCGTCATAAATGCATACCTTAGGACTAAGGTCTAGATGACCACACAAATAATTGTGTGGACCCAGTGACCTGGCCCACATCGTCTTCCCCGTTCTACTATCACCCTCTAAGACAATACTTTTAGATCTCAATGGCCGCGCAGCGGTACCCATCACATTTTCAGCAGCCCATTCCTCTAGGCCTCCGGCACCTTGATCGAATGAAGAAGAAGAAATGGGGGAAACATAAACCTCCACTGGAGGTGTCCAAATCCTATCTAAATTATTTTTTAAATTATGATATTGAAAAATAAAATCTTCTGGGAGCTTTTCCCTTATAATTGCTAATGCAGCTTCCGCTGAACCTGCATTTAAGGCCTCTGCTGCACCATCATTACCTGTCTGTTGACCTCCACTAGCAAATCGCCCACCGATCTGAAACTCACCCCAGTCGATGTACTCTCCGCCCTTCTGGATGTAGGACTTGACACCTGACCTGCACTTAGCTCCCTGGAAATTTGGGTGGAACTGGCTTGAGGTATTAGGGCGAGCGACATCGAAATGTCTTGGGTTTCTGAACCGGGATTTCCCTTTGAATTGGATGAGCGCCTGGATACGCAAGCTCCCATCTTGGTGTTTTTCCTGTGACACTCTGATAAATAATTTATCAGAAGGACAATTTAACGATTTCAGGATTTCGAGCATTTGTTCTTTGGGTATTGGGCATTTTGGATAAGTAGGGAAGATATTTTTGGCTTTAACTTGGAATTGATGAGTACGTGGCATATTGAATTGGGTGCTCTCCAAAACTCTACGGAATGGGGAGCTTTGGGTGCCTATTTATAGCGAGCTCCCAAATGGCATTATCGTAATTTAGGAGAAATAATTCAAAATCTTCACGCTCCTAAAAGCGGCCATCCGTATAATATT

Gene Information

NCBI Accession QBP05514.1
Location 146-502
Gene Name AV2
Protein Name pre-coat
Coding Region ATGTGGGATCCATTAGTAAACGAGTTTCCCGAAACCGTTCACGGTTTTCGATGTATGCTAGCAGTTAAATATATGCAGCTCGTAGACAATACGTATTCTCCAGAGACTTTGGGGTACGATTTAATTAGGGATTTAATATCAGTAATAAGGGCCAGGAATTATGTCGAAGCGACCAGCAGATATAATCATTTCCACGCCCGCTTCGAAGGTACGTCGCCGTCTCAACTTCGACAGCCCATATGCGAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACCAAAGCAAGGGCATGGGCGAACAGGCCCATGAACAGGATGCCAAGGATGTACAGGATGTACAGAAGCCCAGATGTTCCTAG
Protein Sequence MWDPLVNEFPETVHGFRCMLAVKYMQLVDNTYSPETLGYDLIRDLISVIRARNYVEATSRYNHFHARFEGTSPSQLRQPICEPCCCPHCPRHQSKGMGEQAHEQDAKDVQDVQKPRCS

NCBI Accession QBP05520.1
Location 284-574
Gene Name AC5
Protein Name AC5
Coding Region ATGACTTTACCAATGTGCTGGACATCATGTCTAGACTCAAATGACTGGACCTTACATGGGCCTTCACATCCTCTAGGAACATCTGGGCTTCTGTACATCCTGTACATCCTTGGCATCCTGTTCATGGGCCTGTTCGCCCATGCCCTTGCTTTGGTGACGCGGACAATGGGGGCAGCAGCACGGCTCGCATATGGGCTGTCGAAGTTGAGACGGCGACGTACCTTCGAAGCGGGCGTGGAAATGATTATATCTGCTGGTCGCTTCGACATAATTCCTGGCCCTTATTACTGA
Protein Sequence MTLPMCWTSCLDSNDWTLHGPSHPLGTSGLLYILYILGILFMGLFAHALALVTRTMGAAARLAYGLSKLRRRRTFEAGVEMIISAGRFDIIPGPYY

NCBI Accession QBP05515.1
Location 306-1076
Gene Name AV1
Protein Name coat protein
Coding Region ATGTCGAAGCGACCAGCAGATATAATCATTTCCACGCCCGCTTCGAAGGTACGTCGCCGTCTCAACTTCGACAGCCCATATGCGAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACCAAAGCAAGGGCATGGGCGAACAGGCCCATGAACAGGATGCCAAGGATGTACAGGATGTACAGAAGCCCAGATGTTCCTAGAGGATGTGAAGGCCCATGTAAGGTCCAGTCATTTGAGTCTAGACATGATGTCCAGCACATTGGTAAAGTCATGTGTGTTAGTGATGTTATTCGTGGAACTGGGTTGACTCCCCGAGTCGGCAAAAGGTTTTGTGTGAAGTCCGTTTATGTTCTGGGCAAGATCTGGATGGATGAGAACATCAAGACCAAGAATCATACGAATAGTGTTATGTTTTTCCTTGTTAGGGATCGTAGGCCCGTTGATAAGCCCCAAGATTTTGGTGAGGTTTTTAATATGTTTGATAATGAGCCCAGTACGGGGACAGTGAAGAAGGTGCATCGTGATAGGTACCAGGTGCTCAGGAAGTGGCACGCCACTGTGACAGGCGGTCAATATGCATGGAAGGAGCAGGTTTTCGTGAAGAAGTTAATTAGGGTTACTAATTTTGTTGTGTATAACCACAAAGAGGCTGGCAAGTATGAGAACCATACTGAGAATGCATTGATGTTGTATATGGCATGTACCCCTGCCTCTAACCCTGTGTATGCTACCTTGAAGATACGGACCTATTTCTATGACTCACTAACAAATTAA
Protein Sequence MSKRPADIIISTPASKVRRRLNFDSPYASRAAAPIVRVTKARAWANRPMNRMPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVQHIGKVMCVSDVIRGTGLTPRVGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEPSTGTVKKVHRDRYQVLRKWHATVTGGQYAWKEQVFVKKLIRVTNFVVYNHKEAGKYENHTENALMLYMACTPASNPVYATLKIRTYFYDSLTN

NCBI Accession QBP05518.1
Location 1073-1477
Gene Name AC3
Protein Name replication enhancer protein
Coding Region ATGGATTCACGCACAGGGGAACTCATCACTGCAGCTCAGGCCGAGAATGGGGTGTATATCTGGGAAATAACAAATCCCCTATATTTCAAGATAACAGAGCACGACAACCGGCCATTCCTAATGAAGGACGACATCATAACCGTACAGATACAATTCAATCACAACCTCAGGAAAGAGCTGAGGATACACAATTGTTTCCTAGCCTTCCGAATCTGGACGACCTTACAACCTCGGACTGGTCGTTTCTTAAGGGTCTTTAGGACCCAAGTTCTGCAGTATTTAGATAATTTAGCTGTCATTAGTATAAATAATGTACTTAGAGCAGTTGATCATGTATTATGGAATGTATTAGCACAAACAATGTATGTAGGACCATCAAACATAATAAAATTCTATATTTATTAA
Protein Sequence MDSRTGELITAAQAENGVYIWEITNPLYFKITEHDNRPFLMKDDIITVQIQFNHNLRKELRIHNCFLAFRIWTTLQPRTGRFLRVFRTQVLQYLDNLAVISINNVLRAVDHVLWNVLAQTMYVGPSNIIKFYIY

NCBI Accession QBP05517.1
Location 1218-1622
Gene Name AC2
Protein Name transcriptional activator protein
Coding Region ATGCGACCTTCATCACCCTCGAAGGCCCACTGTACTCAGGTACCAATCAAGGTCCAGCACAGGCTAGCCAAGAAGGGGATCAGGCGTCGGAGCGTTGACCTACACTGCGGCTGCTCTTATTTCATCTCACTACGCTGCCACAATCATGGATTCACGCACAGGGGAACTCATCACTGCAGCTCAGGCCGAGAATGGGGTGTATATCTGGGAAATAACAAATCCCCTATATTTCAAGATAACAGAGCACGACAACCGGCCATTCCTAATGAAGGACGACATCATAACCGTACAGATACAATTCAATCACAACCTCAGGAAAGAGCTGAGGATACACAATTGTTTCCTAGCCTTCCGAATCTGGACGACCTTACAACCTCGGACTGGTCGTTTCTTAAGGGTCTTTAG
Protein Sequence MRPSSPSKAHCTQVPIKVQHRLAKKGIRRRSVDLHCGCSYFISLRCHNHGFTHRGTHHCSSGREWGVYLGNNKSPIFQDNRARQPAIPNEGRHHNRTDTIQSQPQERAEDTQLFPSLPNLDDLTTSDWSFLKGL

NCBI Accession QBP05516.1
Location 1525-2610
Gene Name AC1
Protein Name replication associated protein
Coding Region ATGCCACGTACTCATCAATTCCAAGTTAAAGCCAAAAATATCTTCCCTACTTATCCAAAATGCCCAATACCCAAAGAACAAATGCTCGAAATCCTGAAATCGTTAAATTGTCCTTCTGATAAATTATTTATCAGAGTGTCACAGGAAAAACACCAAGATGGGAGCTTGCGTATCCAGGCGCTCATCCAATTCAAAGGGAAATCCCGGTTCAGAAACCCAAGACATTTCGATGTCGCTCGCCCTAATACCTCAAGCCAGTTCCACCCAAATTTCCAGGGAGCTAAGTGCAGGTCAGGTGTCAAGTCCTACATCCAGAAGGGCGGAGAGTACATCGACTGGGGTGAGTTTCAGATCGGTGGGCGATTTGCTAGTGGAGGTCAACAGACAGGTAATGATGGTGCAGCAGAGGCCTTAAATGCAGGTTCAGCGGAAGCTGCATTAGCAATTATAAGGGAAAAGCTCCCAGAAGATTTTATTTTTCAATATCATAATTTAAAAAATAATTTAGATAGGATTTGGACACCTCCAGTGGAGGTTTATGTTTCCCCCATTTCTTCTTCTTCATTCGATCAAGGTGCCGGAGGCCTAGAGGAATGGGCTGCTGAAAATGTGATGGGTACCGCTGCGCGGCCATTGAGATCTAAAAGTATTGTCTTAGAGGGTGATAGTAGAACGGGGAAGACGATGTGGGCCAGGTCACTGGGTCCACACAATTATTTGTGTGGTCATCTAGACCTTAGTCCTAAGGTATGCATTTATGACGAGTGGTACAACGTCATTGATGACGTCGACCCCCACTACCTAAAGCACTTTAAAGAATTCATGGGGGCCCAAAGAGACTGGCAAAGCAACACCAAGTACGGGAAGCCAGTTCAAATTAAAGGTGGTATTCCCACTATCTTCCTCTGCAATTCTGGACCAAATTCCAGCTATAAAGAATACTTGGATGAGGAGAAGAATTCGGCACTCAGAAATTGGGCTATAAAGAATGCGACCTTCATCACCCTCGAAGGCCCACTGTACTCAGGTACCAATCAAGGTCCAGCACAGGCTAGCCAAGAAGGGGATCAGGCGTCGGAGCGTTGA
Protein Sequence MPRTHQFQVKAKNIFPTYPKCPIPKEQMLEILKSLNCPSDKLFIRVSQEKHQDGSLRIQALIQFKGKSRFRNPRHFDVARPNTSSQFHPNFQGAKCRSGVKSYIQKGGEYIDWGEFQIGGRFASGGQQTGNDGAAEALNAGSAEAALAIIREKLPEDFIFQYHNLKNNLDRIWTPPVEVYVSPISSSSFDQGAGGLEEWAAENVMGTAARPLRSKSIVLEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVCIYDEWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPTIFLCNSGPNSSYKEYLDEEKNSALRNWAIKNATFITLEGPLYSGTNQGPAQASQEGDQASER

NCBI Accession QBP05519.1
Location 2196-2453
Gene Name AC4
Protein Name AC4 protein
Coding Region ATGGGAGCTTGCGTATCCAGGCGCTCATCCAATTCAAAGGGAAATCCCGGTTCAGAAACCCAAGACATTTCGATGTCGCTCGCCCTAATACCTCAAGCCAGTTCCACCCAAATTTCCAGGGAGCTAAGTGCAGGTCAGGTGTCAAGTCCTACATCCAGAAGGGCGGAGAGTACATCGACTGGGGTGAGTTTCAGATCGGTGGGCGATTTGCTAGTGGAGGTCAACAGACAGGTAATGATGGTGCAGCAGAGGCCTTAA
Protein Sequence MGACVSRRSSNSKGNPGSETQDISMSLALIPQASSTQISRELSAGQVSSPTSRRAESTSTGVSFRSVGDLLVEVNRQVMMVQQRP