Papaya severe leaf curl virus 1
Basic Information
Genomic Organization
JBrowse
Genome
ACCGGATGGCCGCGATTTTTTTCTAGTGGGCCCCACAACGCACGTGCTGACAAGGACAAACGGACCAATGAAATTGGCTCCTCGTTGCTTAATTATTTAATGGTCCCTCCTATAAACTTAGTGCGCAAGTTGTGCACGCTTACCAATGTGGGATCCATTAGTAAACGAGTTTCCCGAAACCGTTCACGGTTTTCGATGTATGCTAGCAGTTAAATATATGCAGCTCGTAGACAATACGTATTCTCCAGAGACTTTGGGGTACGATTTAATTAGGGATTTAATATCAGTAATAAGGGCCAGGAATTATGTCGAAGCGACCAGCAGATATAATCATTTCCACGCCCGCTTCGAAGGTACGTCGCCGTCTCAACTTCGACAGCCCATATGCGAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACCAAAGCAAGGGCATGGGCGAACAGGCCCATGAACAGGATGCCAAGGATGTACAGGATGTACAGAAGCCCAGATGTTCCTAGAGGATGTGAAGGCCCATGTAAGGTCCAGTCATTTGAGTCTAGACATGATGTCCAGCACATTGGTAAAGTCATGTGTGTTAGTGATGTTATTCGTGGAACTGGGTTGACTCCCCGAGTCGGCAAAAGGTTTTGTGTGAAGTCCGTTTATGTTCTGGGCAAGATCTGGATGGATGAGAACATCAAGACCAAGAATCATACGAATAGTGTTATGTTTTTCCTTGTTAGGGATCGTAGGCCCGTTGATAAGCCCCAAGATTTTGGTGAGGTTTTTAATATGTTTGATAATGAGCCCAGTACGGGGACAGTGAAGAAGGTGCATCGTGATAGGTACCAGGTGCTCAGGAAGTGGCACGCCACTGTGACAGGCGGTCAATATGCATGGAAGGAGCAGGTTTTCGTGAAGAAGTTAATTAGGGTTACTAATTTTGTTGTGTATAACCACAAAGAGGCTGGCAAGTATGAGAACCATACTGAGAATGCATTGATGTTGTATATGGCATGTACCCCTGCCTCTAACCCTGTGTATGCTACCTTGAAGATACGGACCTATTTCTATGACTCACTAACAAATTAATAAATATAGAATTTTATTATGTTTGATGGTCCTACATACATTGTTTGTGCTAATACATTCCATAATACATGATCAACTGCTCTAAGTACATTATTTATACTAATGACAGCTAAATTATCTAAATACTGCAGAACTTGGGTCCTAAAGACCCTTAAGAAACGACCAGTCCGAGGTTGTAAGGTCGTCCAGATTCGGAAGGCTAGGAAACAATTGTGTATCCTCAGCTCTTTCCTGAGGTTGTGATTGAATTGTATCTGTACGGTTATGATGTCGTCCTTCATTAGGAATGGCCGGTTGTCGTGCTCTGTTATCTTGAAATATAGGGGATTTGTTATTTCCCAGATATACACCCCATTCTCGGCCTGAGCTGCAGTGATGAGTTCCCCTGTGCGTGAATCCATGATTGTGGCAGCGTAGTGAGATGAAATAAGAGCAGCCGCAGTGTAGGTCAACGCTCCGACGCCTGATCCCCTTCTTGGCTAGCCTGTGCTGGACCTTGATTGGTACCTGAGTACAGTGGGCCTTCGAGGGTGATGAAGGTCGCATTCTTTATAGCCCAATTTCTGAGTGCCGAATTCTTCTCCTCATCCAAGTATTCTTTATAGCTGGAATTTGGTCCAGAATTGCAGAGGAAGATAGTGGGAATACCACCTTTAATTTGAACTGGCTTCCCGTACTTGGTGTTGCTTTGCCAGTCTCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGGTAGTGGGGGTCGACGTCATCAATGACGTTGTACCACTCGTCATAAATGCATACCTTAGGACTAAGGTCTAGATGACCACACAAATAATTGTGTGGACCCAGTGACCTGGCCCACATCGTCTTCCCCGTTCTACTATCACCCTCTAAGACAATACTTTTAGATCTCAATGGCCGCGCAGCGGTACCCATCACATTTTCAGCAGCCCATTCCTCTAGGCCTCCGGCACCTTGATCGAATGAAGAAGAAGAAATGGGGGAAACATAAACCTCCACTGGAGGTGTCCAAATCCTATCTAAATTATTTTTTAAATTATGATATTGAAAAATAAAATCTTCTGGGAGCTTTTCCCTTATAATTGCTAATGCAGCTTCCGCTGAACCTGCATTTAAGGCCTCTGCTGCACCATCATTACCTGTCTGTTGACCTCCACTAGCAAATCGCCCACCGATCTGAAACTCACCCCAGTCGATGTACTCTCCGCCCTTCTGGATGTAGGACTTGACACCTGACCTGCACTTAGCTCCCTGGAAATTTGGGTGGAACTGGCTTGAGGTATTAGGGCGAGCGACATCGAAATGTCTTGGGTTTCTGAACCGGGATTTCCCTTTGAATTGGATGAGCGCCTGGATACGCAAGCTCCCATCTTGGTGTTTTTCCTGTGACACTCTGATAAATAATTTATCAGAAGGACAATTTAACGATTTCAGGATTTCGAGCATTTGTTCTTTGGGTATTGGGCATTTTGGATAAGTAGGGAAGATATTTTTGGCTTTAACTTGGAATTGATGAGTACGTGGCATATTGAATTGGGTGCTCTCCAAAACTCTACGGAATGGGGAGCTTTGGGTGCCTATTTATAGCGAGCTCCCAAATGGCATTATCGTAATTTAGGAGAAATAATTCAAAATCTTCACGCTCCTAAAAGCGGCCATCCGTATAATATT
Gene Information
NCBI Accession
|
QBP05514.1
|
Location
|
146-502 |
Gene Name
|
AV2 |
Protein Name
|
pre-coat |
Coding Region
|
ATGTGGGATCCATTAGTAAACGAGTTTCCCGAAACCGTTCACGGTTTTCGATGTATGCTAGCAGTTAAATATATGCAGCTCGTAGACAATACGTATTCTCCAGAGACTTTGGGGTACGATTTAATTAGGGATTTAATATCAGTAATAAGGGCCAGGAATTATGTCGAAGCGACCAGCAGATATAATCATTTCCACGCCCGCTTCGAAGGTACGTCGCCGTCTCAACTTCGACAGCCCATATGCGAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACCAAAGCAAGGGCATGGGCGAACAGGCCCATGAACAGGATGCCAAGGATGTACAGGATGTACAGAAGCCCAGATGTTCCTAG |
Protein Sequence
|
MWDPLVNEFPETVHGFRCMLAVKYMQLVDNTYSPETLGYDLIRDLISVIRARNYVEATSRYNHFHARFEGTSPSQLRQPICEPCCCPHCPRHQSKGMGEQAHEQDAKDVQDVQKPRCS |
NCBI Accession
|
QBP05520.1
|
Location
|
284-574 |
Gene Name
|
AC5 |
Protein Name
|
AC5 |
Coding Region
|
ATGACTTTACCAATGTGCTGGACATCATGTCTAGACTCAAATGACTGGACCTTACATGGGCCTTCACATCCTCTAGGAACATCTGGGCTTCTGTACATCCTGTACATCCTTGGCATCCTGTTCATGGGCCTGTTCGCCCATGCCCTTGCTTTGGTGACGCGGACAATGGGGGCAGCAGCACGGCTCGCATATGGGCTGTCGAAGTTGAGACGGCGACGTACCTTCGAAGCGGGCGTGGAAATGATTATATCTGCTGGTCGCTTCGACATAATTCCTGGCCCTTATTACTGA |
Protein Sequence
|
MTLPMCWTSCLDSNDWTLHGPSHPLGTSGLLYILYILGILFMGLFAHALALVTRTMGAAARLAYGLSKLRRRRTFEAGVEMIISAGRFDIIPGPYY |
NCBI Accession
|
QBP05515.1
|
Location
|
306-1076 |
Gene Name
|
AV1 |
Protein Name
|
coat protein |
Coding Region
|
ATGTCGAAGCGACCAGCAGATATAATCATTTCCACGCCCGCTTCGAAGGTACGTCGCCGTCTCAACTTCGACAGCCCATATGCGAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACCAAAGCAAGGGCATGGGCGAACAGGCCCATGAACAGGATGCCAAGGATGTACAGGATGTACAGAAGCCCAGATGTTCCTAGAGGATGTGAAGGCCCATGTAAGGTCCAGTCATTTGAGTCTAGACATGATGTCCAGCACATTGGTAAAGTCATGTGTGTTAGTGATGTTATTCGTGGAACTGGGTTGACTCCCCGAGTCGGCAAAAGGTTTTGTGTGAAGTCCGTTTATGTTCTGGGCAAGATCTGGATGGATGAGAACATCAAGACCAAGAATCATACGAATAGTGTTATGTTTTTCCTTGTTAGGGATCGTAGGCCCGTTGATAAGCCCCAAGATTTTGGTGAGGTTTTTAATATGTTTGATAATGAGCCCAGTACGGGGACAGTGAAGAAGGTGCATCGTGATAGGTACCAGGTGCTCAGGAAGTGGCACGCCACTGTGACAGGCGGTCAATATGCATGGAAGGAGCAGGTTTTCGTGAAGAAGTTAATTAGGGTTACTAATTTTGTTGTGTATAACCACAAAGAGGCTGGCAAGTATGAGAACCATACTGAGAATGCATTGATGTTGTATATGGCATGTACCCCTGCCTCTAACCCTGTGTATGCTACCTTGAAGATACGGACCTATTTCTATGACTCACTAACAAATTAA |
Protein Sequence
|
MSKRPADIIISTPASKVRRRLNFDSPYASRAAAPIVRVTKARAWANRPMNRMPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVQHIGKVMCVSDVIRGTGLTPRVGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEPSTGTVKKVHRDRYQVLRKWHATVTGGQYAWKEQVFVKKLIRVTNFVVYNHKEAGKYENHTENALMLYMACTPASNPVYATLKIRTYFYDSLTN |
NCBI Accession
|
QBP05518.1
|
Location
|
1073-1477 |
Gene Name
|
AC3 |
Protein Name
|
replication enhancer protein |
Coding Region
|
ATGGATTCACGCACAGGGGAACTCATCACTGCAGCTCAGGCCGAGAATGGGGTGTATATCTGGGAAATAACAAATCCCCTATATTTCAAGATAACAGAGCACGACAACCGGCCATTCCTAATGAAGGACGACATCATAACCGTACAGATACAATTCAATCACAACCTCAGGAAAGAGCTGAGGATACACAATTGTTTCCTAGCCTTCCGAATCTGGACGACCTTACAACCTCGGACTGGTCGTTTCTTAAGGGTCTTTAGGACCCAAGTTCTGCAGTATTTAGATAATTTAGCTGTCATTAGTATAAATAATGTACTTAGAGCAGTTGATCATGTATTATGGAATGTATTAGCACAAACAATGTATGTAGGACCATCAAACATAATAAAATTCTATATTTATTAA |
Protein Sequence
|
MDSRTGELITAAQAENGVYIWEITNPLYFKITEHDNRPFLMKDDIITVQIQFNHNLRKELRIHNCFLAFRIWTTLQPRTGRFLRVFRTQVLQYLDNLAVISINNVLRAVDHVLWNVLAQTMYVGPSNIIKFYIY |
NCBI Accession
|
QBP05517.1
|
Location
|
1218-1622 |
Gene Name
|
AC2 |
Protein Name
|
transcriptional activator protein |
Coding Region
|
ATGCGACCTTCATCACCCTCGAAGGCCCACTGTACTCAGGTACCAATCAAGGTCCAGCACAGGCTAGCCAAGAAGGGGATCAGGCGTCGGAGCGTTGACCTACACTGCGGCTGCTCTTATTTCATCTCACTACGCTGCCACAATCATGGATTCACGCACAGGGGAACTCATCACTGCAGCTCAGGCCGAGAATGGGGTGTATATCTGGGAAATAACAAATCCCCTATATTTCAAGATAACAGAGCACGACAACCGGCCATTCCTAATGAAGGACGACATCATAACCGTACAGATACAATTCAATCACAACCTCAGGAAAGAGCTGAGGATACACAATTGTTTCCTAGCCTTCCGAATCTGGACGACCTTACAACCTCGGACTGGTCGTTTCTTAAGGGTCTTTAG |
Protein Sequence
|
MRPSSPSKAHCTQVPIKVQHRLAKKGIRRRSVDLHCGCSYFISLRCHNHGFTHRGTHHCSSGREWGVYLGNNKSPIFQDNRARQPAIPNEGRHHNRTDTIQSQPQERAEDTQLFPSLPNLDDLTTSDWSFLKGL |
NCBI Accession
|
QBP05516.1
|
Location
|
1525-2610 |
Gene Name
|
AC1 |
Protein Name
|
replication associated protein |
Coding Region
|
ATGCCACGTACTCATCAATTCCAAGTTAAAGCCAAAAATATCTTCCCTACTTATCCAAAATGCCCAATACCCAAAGAACAAATGCTCGAAATCCTGAAATCGTTAAATTGTCCTTCTGATAAATTATTTATCAGAGTGTCACAGGAAAAACACCAAGATGGGAGCTTGCGTATCCAGGCGCTCATCCAATTCAAAGGGAAATCCCGGTTCAGAAACCCAAGACATTTCGATGTCGCTCGCCCTAATACCTCAAGCCAGTTCCACCCAAATTTCCAGGGAGCTAAGTGCAGGTCAGGTGTCAAGTCCTACATCCAGAAGGGCGGAGAGTACATCGACTGGGGTGAGTTTCAGATCGGTGGGCGATTTGCTAGTGGAGGTCAACAGACAGGTAATGATGGTGCAGCAGAGGCCTTAAATGCAGGTTCAGCGGAAGCTGCATTAGCAATTATAAGGGAAAAGCTCCCAGAAGATTTTATTTTTCAATATCATAATTTAAAAAATAATTTAGATAGGATTTGGACACCTCCAGTGGAGGTTTATGTTTCCCCCATTTCTTCTTCTTCATTCGATCAAGGTGCCGGAGGCCTAGAGGAATGGGCTGCTGAAAATGTGATGGGTACCGCTGCGCGGCCATTGAGATCTAAAAGTATTGTCTTAGAGGGTGATAGTAGAACGGGGAAGACGATGTGGGCCAGGTCACTGGGTCCACACAATTATTTGTGTGGTCATCTAGACCTTAGTCCTAAGGTATGCATTTATGACGAGTGGTACAACGTCATTGATGACGTCGACCCCCACTACCTAAAGCACTTTAAAGAATTCATGGGGGCCCAAAGAGACTGGCAAAGCAACACCAAGTACGGGAAGCCAGTTCAAATTAAAGGTGGTATTCCCACTATCTTCCTCTGCAATTCTGGACCAAATTCCAGCTATAAAGAATACTTGGATGAGGAGAAGAATTCGGCACTCAGAAATTGGGCTATAAAGAATGCGACCTTCATCACCCTCGAAGGCCCACTGTACTCAGGTACCAATCAAGGTCCAGCACAGGCTAGCCAAGAAGGGGATCAGGCGTCGGAGCGTTGA |
Protein Sequence
|
MPRTHQFQVKAKNIFPTYPKCPIPKEQMLEILKSLNCPSDKLFIRVSQEKHQDGSLRIQALIQFKGKSRFRNPRHFDVARPNTSSQFHPNFQGAKCRSGVKSYIQKGGEYIDWGEFQIGGRFASGGQQTGNDGAAEALNAGSAEAALAIIREKLPEDFIFQYHNLKNNLDRIWTPPVEVYVSPISSSSFDQGAGGLEEWAAENVMGTAARPLRSKSIVLEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVCIYDEWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPTIFLCNSGPNSSYKEYLDEEKNSALRNWAIKNATFITLEGPLYSGTNQGPAQASQEGDQASER |
NCBI Accession
|
QBP05519.1
|
Location
|
2196-2453 |
Gene Name
|
AC4 |
Protein Name
|
AC4 protein |
Coding Region
|
ATGGGAGCTTGCGTATCCAGGCGCTCATCCAATTCAAAGGGAAATCCCGGTTCAGAAACCCAAGACATTTCGATGTCGCTCGCCCTAATACCTCAAGCCAGTTCCACCCAAATTTCCAGGGAGCTAAGTGCAGGTCAGGTGTCAAGTCCTACATCCAGAAGGGCGGAGAGTACATCGACTGGGGTGAGTTTCAGATCGGTGGGCGATTTGCTAGTGGAGGTCAACAGACAGGTAATGATGGTGCAGCAGAGGCCTTAA |
Protein Sequence
|
MGACVSRRSSNSKGNPGSETQDISMSLALIPQASSTQISRELSAGQVSSPTSRRAESTSTGVSFRSVGDLLVEVNRQVMMVQQRP |