Papaya leaf curl virus


Basic Information

Genus Begomovirus
NCBI Assembly GCF_000841085.1
Release date 2015/2/12
Submitter Saxena,S., Hallan,V.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization


JBrowse


Genome

NC_004147
TAATATTACCGGATGGCCGCGATTTCTTTAGTGGGCCCTTAACGCATTAACTGACAAGGACATGCGAACCAATCATATGACACGCTCAAAGCCTAATTGTTTTTTGGTCCCTTATTTAAACTTCGTCCCCAAGTATTTTCTTTTGCACTATGTGGGATCCATTGTTGAACGAGTTTCCCGAAACCGTCCACGGTTTTATATGTATGTTAGCAGTTAAATATCTGCAGTTATTAAAAAAGACTTATTCTCCTGACACATTAGGTTACGATTTATTTAGGGATTTAATTTCAGTTATTAGGGCTAGAAATTATGTCGAAGCGACCAGCAGATATATTCATTTCCACGCCCGCTTCGAAGGTACGCCGCCGTCTCAACTTCGACAGCCCGTATGTGAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACCAAAGCAAAAGCATGGGCGAACAGGCCCATGAACAGAAAGCCCAGGATGTACAGGATGTACAGAAGTCCAGATGTCCCTAGAGGATGTGAAGGCCCATGTAAGGTCCAGTCTTTTGAGTCTAGACATGACATTCAGCATATAGGTAAAGTTATGTGTATTAGTGATGTTACTCGTGGAAATGGGCTGACCCATAGAGTTGGTAAGCGTTTTTGTGTTAAGTCTGTTAATGTTTTGGGCAAGATCTGGATGGATGAAAATATTAAGACTAAGGATCACACGAATAGTGTGATGTTCTTTTTAGTTAGGGATCGTAGACCTGTAGATAAACCACAAGATTTTGGAGAGGTATTTAACATGTTTGATAATGAGCCCAGTACGGCTACTGTGAAGAATGTTCATCGTGATAGGTATCAAGTTCTTCGGAAATGGCATGCAACTGTTACGGGTGGACAATATGCGTCAAAGGAACAAGCCCTCGTGAAGAAGTTTGTTAGGGTTAACAATTATGTTGTATATAACCAGCAAGAAGCTGGCAAGTATGAGAATCATTCTGAGAATGCGTTAATGTTGTATATGGCATGTACTCATGCCTCTAACCCAGTGTATGCTACTTTGAAGATACGGATCTATTTCTATGATTCCGTAACAAATTAATAAATATTAAATTTTATTGAATATGATTGTTCTACATATACAATGTGTTGTAATACATCCCATAAAACATGATCAACTGATCTGATTACATTATTAATACTGTTAACTCCTAAATTATCTAAATATTTTAAAACTTGAGTCTTAAAGACCCCTAAGAAACGACCAGTCTGAGGCTGTGAAGTCATCCAGATTCGGTAGACTAGAAAACATTTGTGCATCCCCAACGCTTTCCTCAGGTTGTAGTTGAACTGTATTTGGACTTTGATTATGTCTTCTTTCATTGTGAATGGACGGTTGTGGTGTTCTGTTATCTTGAAATACAGGGGATTTTGAATCTCCCAGATAAACACGCCATTCTCTGCTTGAGCTGCAGTGATGAGTTCCCCTGTGCGTGAATCCATAATTGTGACAGGCTAGTGCTATGAAATATGAACATCCACAAGGGAGATCAACACGACGACGTCTGTTCCTCTTCTTGGCTAGCCTGTGCTGCACTTTGATTGGAACCTGAGTAGAGTGGGCCTTCGAGGGTGACGAAGATCGCATTCTTTAAAGCCCAATTTTTCAGTGCGTTATTTTTCTCTTCGTCCAAGAACTCTTTATAGCTTGAGTTGGGTCCTGGATTGCAGAGGAAGATAGTGGGTATTCCTCCTTTAATTTGAACTGGCTTTCCGTACTTTGTATTTGATTGCCAGTCCCTTTGGGCCCCCATGAATTCCTTAAAGTGCTTTAAATAATGCGGATCGACGTCATCAATGACGTTGTACCAGGCATCATTATTGTAGACCTTAGGACTAAGGTCTAAGTGACCACACAGATAATTATGTGGACCCAAAGACCTAGCCCACATCGTCTTTCCTGTTCTACTATCACCCTCTATGACAATACTCATGGGTCTCAAAGTCCGCGCAGCGGCACCCATTACATTCTCAACAGCCCATTCTTCAAGTTCTTCAGGAACTTGATTAAAAGAAGAAGATAAAAAAGGAGAAACATAAACCTCTACAGGAGGTGTAAAAATCCTATCTAAATTACATTTTAAATTATGATATTGAAAAATAAAATCTTTAGGGAGTTTTTCCCTATTTATTGCTAAAGCTGCGTCAGCTGAACCTGCATTTAGGGCCTCTGCTGCTGCATCATTAGCTGTCTGTTGACCTCCTCGACCATATCTTCCATCGATCTGAAACTGACCCCAGTCGATGTAATCACTGTCCTCCTCGATGTAGGACTTGACATCAGAGCTGGACTTAGCTCCCTGGAAGTTTGGGTTGAATTGGGTGGAGTTATTAGGGTGAGTGACATCGAAATGTCTGGTGTTTCTGAACTTGGATTTACCTTTGAACTGGATGAGGGCATGGATATGCAGAGACCCATCTTGGTGTTTTTCTTGTGCCACTCTGATAAATAATTTATCAGATGGGCAATTTATTGACTGAAGAATCTCGAGCATTTGCTCTTTGGGTATTGGGCATTTTGGATAAGTGAGGAAGATATTTTTGGCATTAACACAAAAAGAGTTAAGACGAGGCATATTGAATTGGGGACACTCAAAACTCTGAGGAATGGGGGACTCTGGGGACGCATTTATATGGTGTCCCCAAATGGCTTTTTCGTAATTTTGAAAGAAAATTCAAAATTCAAAATCCCAAAGCGGCCATCCGTA

Gene Information

NCBI Accession NP_689456.1
Location 150-506
Gene Name AV2
Protein Name pre-coat protein
Coding Region ATGTGGGATCCATTGTTGAACGAGTTTCCCGAAACCGTCCACGGTTTTATATGTATGTTAGCAGTTAAATATCTGCAGTTATTAAAAAAGACTTATTCTCCTGACACATTAGGTTACGATTTATTTAGGGATTTAATTTCAGTTATTAGGGCTAGAAATTATGTCGAAGCGACCAGCAGATATATTCATTTCCACGCCCGCTTCGAAGGTACGCCGCCGTCTCAACTTCGACAGCCCGTATGTGAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACCAAAGCAAAAGCATGGGCGAACAGGCCCATGAACAGAAAGCCCAGGATGTACAGGATGTACAGAAGTCCAGATGTCCCTAG
Protein Sequence MWDPLLNEFPETVHGFICMLAVKYLQLLKKTYSPDTLGYDLFRDLISVIRARNYVEATSRYIHFHARFEGTPPSQLRQPVCEPCCCPHCPRHQSKSMGEQAHEQKAQDVQDVQKSRCP

NCBI Accession NP_689457.1
Location 301-618
Gene Name AC5
Protein Name AC5 protein
Coding Region ATGGGTCAGCCCATTTCCACGAGTAACATCACTAATACACATAACTTTACCTATATGCTGAATGTCATGTCTAGACTCAAAAGACTGGACCTTACATGGGCCTTCACATCCTCTAGGGACATCTGGACTTCTGTACATCCTGTACATCCTGGGCTTTCTGTTCATGGGCCTGTTCGCCCATGCTTTTGCTTTGGTGACGCGGACAATGGGGGCAGCAGCACGGCTCACATACGGGCTGTCGAAGTTGAGACGGCGGCGTACCTTCGAAGCGGGCGTGGAAATGAATATATCTGCTGGTCGCTTCGACATAATTTCTAG
Protein Sequence MGQPISTSNITNTHNFTYMLNVMSRLKRLDLTWAFTSSRDIWTSVHPVHPGLSVHGPVRPCFCFGDADNGGSSTAHIRAVEVETAAYLRSGRGNEYICWSLRHNF

NCBI Accession NP_689458.1
Location 310-1080
Gene Name AV1
Protein Name Coat protein
Coding Region ATGTCGAAGCGACCAGCAGATATATTCATTTCCACGCCCGCTTCGAAGGTACGCCGCCGTCTCAACTTCGACAGCCCGTATGTGAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACCAAAGCAAAAGCATGGGCGAACAGGCCCATGAACAGAAAGCCCAGGATGTACAGGATGTACAGAAGTCCAGATGTCCCTAGAGGATGTGAAGGCCCATGTAAGGTCCAGTCTTTTGAGTCTAGACATGACATTCAGCATATAGGTAAAGTTATGTGTATTAGTGATGTTACTCGTGGAAATGGGCTGACCCATAGAGTTGGTAAGCGTTTTTGTGTTAAGTCTGTTAATGTTTTGGGCAAGATCTGGATGGATGAAAATATTAAGACTAAGGATCACACGAATAGTGTGATGTTCTTTTTAGTTAGGGATCGTAGACCTGTAGATAAACCACAAGATTTTGGAGAGGTATTTAACATGTTTGATAATGAGCCCAGTACGGCTACTGTGAAGAATGTTCATCGTGATAGGTATCAAGTTCTTCGGAAATGGCATGCAACTGTTACGGGTGGACAATATGCGTCAAAGGAACAAGCCCTCGTGAAGAAGTTTGTTAGGGTTAACAATTATGTTGTATATAACCAGCAAGAAGCTGGCAAGTATGAGAATCATTCTGAGAATGCGTTAATGTTGTATATGGCATGTACTCATGCCTCTAACCCAGTGTATGCTACTTTGAAGATACGGATCTATTTCTATGATTCCGTAACAAATTAA
Protein Sequence MSKRPADIFISTPASKVRRRLNFDSPYVSRAAAPIVRVTKAKAWANRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDIQHIGKVMCISDVTRGNGLTHRVGKRFCVKSVNVLGKIWMDENIKTKDHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEPSTATVKNVHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENHSENALMLYMACTHASNPVYATLKIRIYFYDSVTN

NCBI Accession NP_689459.1
Location 1077-1481
Gene Name AC3
Protein Name replicase-associated protein
Coding Region ATGGATTCACGCACAGGGGAACTCATCACTGCAGCTCAAGCAGAGAATGGCGTGTTTATCTGGGAGATTCAAAATCCCCTGTATTTCAAGATAACAGAACACCACAACCGTCCATTCACAATGAAAGAAGACATAATCAAAGTCCAAATACAGTTCAACTACAACCTGAGGAAAGCGTTGGGGATGCACAAATGTTTTCTAGTCTACCGAATCTGGATGACTTCACAGCCTCAGACTGGTCGTTTCTTAGGGGTCTTTAAGACTCAAGTTTTAAAATATTTAGATAATTTAGGAGTTAACAGTATTAATAATGTAATCAGATCAGTTGATCATGTTTTATGGGATGTATTACAACACATTGTATATGTAGAACAATCATATTCAATAAAATTTAATATTTATTAA
Protein Sequence MDSRTGELITAAQAENGVFIWEIQNPLYFKITEHHNRPFTMKEDIIKVQIQFNYNLRKALGMHKCFLVYRIWMTSQPQTGRFLGVFKTQVLKYLDNLGVNSINNVIRSVDHVLWDVLQHIVYVEQSYSIKFNIY

NCBI Accession NP_689460.1
Location 1222-1626
Gene Name AC2
Protein Name replicase-associated protein
Coding Region ATGCGATCTTCGTCACCCTCGAAGGCCCACTCTACTCAGGTTCCAATCAAAGTGCAGCACAGGCTAGCCAAGAAGAGGAACAGACGTCGTCGTGTTGATCTCCCTTGTGGATGTTCATATTTCATAGCACTAGCCTGTCACAATTATGGATTCACGCACAGGGGAACTCATCACTGCAGCTCAAGCAGAGAATGGCGTGTTTATCTGGGAGATTCAAAATCCCCTGTATTTCAAGATAACAGAACACCACAACCGTCCATTCACAATGAAAGAAGACATAATCAAAGTCCAAATACAGTTCAACTACAACCTGAGGAAAGCGTTGGGGATGCACAAATGTTTTCTAGTCTACCGAATCTGGATGACTTCACAGCCTCAGACTGGTCGTTTCTTAGGGGTCTTTAA
Protein Sequence MRSSSPSKAHSTQVPIKVQHRLAKKRNRRRRVDLPCGCSYFIALACHNYGFTHRGTHHCSSSREWRVYLGDSKSPVFQDNRTPQPSIHNERRHNQSPNTVQLQPEESVGDAQMFSSLPNLDDFTASDWSFLRGL

NCBI Accession NP_689461.1
Location 1529-2614
Gene Name AC1
Protein Name replicase
Coding Region ATGCCTCGTCTTAACTCTTTTTGTGTTAATGCCAAAAATATCTTCCTCACTTATCCAAAATGCCCAATACCCAAAGAGCAAATGCTCGAGATTCTTCAGTCAATAAATTGCCCATCTGATAAATTATTTATCAGAGTGGCACAAGAAAAACACCAAGATGGGTCTCTGCATATCCATGCCCTCATCCAGTTCAAAGGTAAATCCAAGTTCAGAAACACCAGACATTTCGATGTCACTCACCCTAATAACTCCACCCAATTCAACCCAAACTTCCAGGGAGCTAAGTCCAGCTCTGATGTCAAGTCCTACATCGAGGAGGACAGTGATTACATCGACTGGGGTCAGTTTCAGATCGATGGAAGATATGGTCGAGGAGGTCAACAGACAGCTAATGATGCAGCAGCAGAGGCCCTAAATGCAGGTTCAGCTGACGCAGCTTTAGCAATAAATAGGGAAAAACTCCCTAAAGATTTTATTTTTCAATATCATAATTTAAAATGTAATTTAGATAGGATTTTTACACCTCCTGTAGAGGTTTATGTTTCTCCTTTTTTATCTTCTTCTTTTAATCAAGTTCCTGAAGAACTTGAAGAATGGGCTGTTGAGAATGTAATGGGTGCCGCTGCGCGGACTTTGAGACCCATGAGTATTGTCATAGAGGGTGATAGTAGAACAGGAAAGACGATGTGGGCTAGGTCTTTGGGTCCACATAATTATCTGTGTGGTCACTTAGACCTTAGTCCTAAGGTCTACAATAATGATGCCTGGTACAACGTCATTGATGACGTCGATCCGCATTATTTAAAGCACTTTAAGGAATTCATGGGGGCCCAAAGGGACTGGCAATCAAATACAAAGTACGGAAAGCCAGTTCAAATTAAAGGAGGAATACCCACTATCTTCCTCTGCAATCCAGGACCCAACTCAAGCTATAAAGAGTTCTTGGACGAAGAGAAAAATAACGCACTGAAAAATTGGGCTTTAAAGAATGCGATCTTCGTCACCCTCGAAGGCCCACTCTACTCAGGTTCCAATCAAAGTGCAGCACAGGCTAGCCAAGAAGAGGAACAGACGTCGTCGTGTTGA
Protein Sequence MPRLNSFCVNAKNIFLTYPKCPIPKEQMLEILQSINCPSDKLFIRVAQEKHQDGSLHIHALIQFKGKSKFRNTRHFDVTHPNNSTQFNPNFQGAKSSSDVKSYIEEDSDYIDWGQFQIDGRYGRGGQQTANDAAAEALNAGSADAALAINREKLPKDFIFQYHNLKCNLDRIFTPPVEVYVSPFLSSSFNQVPEELEEWAVENVMGAAARTLRPMSIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYNNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNNALKNWALKNAIFVTLEGPLYSGSNQSAAQASQEEEQTSSC

NCBI Accession NP_689462.1
Location 2200-2457
Gene Name AC4
Protein Name AC4 protein
Coding Region ATGGGTCTCTGCATATCCATGCCCTCATCCAGTTCAAAGGTAAATCCAAGTTCAGAAACACCAGACATTTCGATGTCACTCACCCTAATAACTCCACCCAATTCAACCCAAACTTCCAGGGAGCTAAGTCCAGCTCTGATGTCAAGTCCTACATCGAGGAGGACAGTGATTACATCGACTGGGGTCAGTTTCAGATCGATGGAAGATATGGTCGAGGAGGTCAACAGACAGCTAATGATGCAGCAGCAGAGGCCCTAA
Protein Sequence MGLCISMPSSSSKVNPSSETPDISMSLTLITPPNSTQTSRELSPALMSSPTSRRTVITSTGVSFRSMEDMVEEVNRQLMMQQQRP