Papaya leaf curl China virus
Basic Information
Genus |
Begomovirus
|
NCBI Assembly |
GCF_000846865.1 |
Isolate |
China:Guangxi |
Release date |
2015/2/12 |
Submitter |
Wang,X., Xie,Y., Zhou,X. |
Host |
|
Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCGGATGGCCGCGATTTTTTTTAAAGTGGTCCCCGCATGCGCTGGTGTCCAATCCTATCCGCTCCTCAAAGCTTAATTATTAAGTGGTCCCCTATATAACTTGGTCCCCAAGTACTAAAGCTAAACATGTGGGATCCTTTACTAAACGAGTTTCCCGAGACCGTACATGGTTTCAGGTGTATGCTAGCAATTAAGTATTTGCAACTGGTAGAAAATACGTACTCTCCAGATACATTAGGGCACGACTTAATTCGTGATTTAATTTCAGTTATTCGTGCTAGAGATTATGTCGAAGCGACCCGCCGATATAGTCATTTCCACACCCGCATCCAAGGTGCGTCGCCGGCTGAATTTCGACAGCCCGTATGTCAGCCGTGCTGCTGCCCCCACTGTCCTCGTCACAAACAAAAGGAGGTCATGGGTGAATCGGCCCATGTACCGAAAGCCCAGGATGTACAGGATGTACAAAAGCCCTGATGTGCCTCGTGGTTGTGAGGGTCCATGTAAGGTCCAGTCGTATGAACAGCGTCATGATGTAGCACACGTAGGTAAGGTAATTTGTGTGTCGGATGTTACCCGTGGTAATGGTTTGACTCATCGAGTCGGGAAGAGGTTTTGTGTTAAATCAGTCTATGTTTTGGGCAAGATATGGATGGATGAGAACATTAAGACCAAGAATCATACCAACACAGTCATGTTTTTTCTAGTTCGTGATAGGAGACCATTTGGCACTCCACAGGATTTTGGCCAGGTGTTTAACATGTATGATAATGAGCCTAGCACTGCTACTGTGAAGAACGACAACAGGGATCGCTTTCAAGTTCTACGGCGTTTTCAGGCGACTGTTACGGGTGGTCAGTATGCAAGTAAGGAGCAAGCAATAGTTAGGAAATTTATGAAGGTTAACAACCATGTGACTTATAACCATCAAGAGGCTGCGAAGTATGATAACCACACAGAGAATGCTTTGTTATTGTATATGGCATGTACTCATGCTAGTAATCCAGTGTATGCTACTTTGAAGATCAGGATCTATTTCTATGATTCTGTTCAGAATTAATAAAGATTGAATTTTATTATATGAGAATGTGTTACATATTCTGTTTTCTCCAATACATCCCATAATACATGATTACATGCTCTAATTACATTGTTAATACTAATTACACCCATATTATCTAAATATTTCATACATTGAACCCTAAATACTCTTAAGAAACGCCAAGTCTGAGGTTGTAAGCGAGTCCAGATCTGGAAGATCAGAAAACACTGGTGTATTCCCAATGCTTTCCTCAGGTTGTGGTTGAATTGTATTTGGATCGTTATGATGYCGTGGTTGGTGTTGAATGGTCTCTCGTGGTGCTTGGTTATCTTGAAATATAGGGGATTTTTGATCGTCCAGGTATACACGCCACTCTCGCATTGAGTTGCAGTGAGTAATTCCCCTGTGCGAAAATCCATGATTTGCACAATCTATGCCGAAGTAGTATGAGCACCCGCACGTTAGATCAACTCTCCGTCTCCGAATGGGCCTCCTCTTGGCTATTCTGTGTTGCACTTTGATTGGTACCTGAGTACAATGGGCTGTTGAGGGTGATGAATTCCGCATTCTTTAATGCCCAATCTTTTAATGCTGAATTTTTATCCTCATTCAAGTACTCTTTATATGATGATGTTGGGCCTGGATTGCATAGGAAGATAGTTGGGATTCCACCTTTAATTTGAATGGCTTTCCCGTACTTAGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGATAGTGGGGGTCTACGTCATCAATGACGTTATACCAAGCATCATTACTGTATACTTTTGGGCTTAGATCAAGATGTCCACACAAATAATTGTGTGGTCCCAGTGATCTGGCCCACATTGTTTTACCCGTACGACTATCACCTTCTATCACAATACTCTTGGGTCTCCACGGCCGCGCAGCGGCACCACTCACGTTCTCAGAAACCCACTCTTCAAGTTCTTCTGGAACTTGATCGAATGAAGAAGAAAGAAAAGGACAAACAAAAACCTCTATAGGAGGTGCAAAAATCCTATCTAAATTACTATTTAAATTATGAAACTGTAAAACGAAATCTTTAGGAGCCTTCTCCTTTAATATATTGAGGGCCGCTGGTTTGGACCTTGCATTGATTGCCTCGGCATATGCGTCGTTGGCAGATTGGCAACCTCCTCTAGCTGATCTTCCATCGATTTGGAAAACTCCATGATCAAGCACGTCTCCGTCTTTTTCCATGTATGCTTTAACATCTGTTGAGGTTTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGCTTGGGGAGGTGAGATCGAAGAATCTGTTGTTTTGGCACTTGAATTTGCCTCCGAACTGTATGAGGACATGCAGGTGAGGAGACCCATCTCCGTGTAGTTCCCTGCAAATACGTATGAATAATTTATTAGTCGGGGTTGATAAGGCTGAGATTTGGGAAAATGCCTCTTCTTTAGTAAGGGAGCAGTGTGGATAAGTGAGGGAATAATTCTTGGCATTTATTAAAAATTTTTTTGGCTGAGGCATATTGACTGGTCAATCGGGTCCTCTCAAACTTGGCTATGCAATCGGGGAATGGGTCCTTATTTATAGTTCAGGACCTAAATGGCATTATTGTAATTCCCAAAAGAAATTCAAAATTTGAATTTTGAATCCAAAAGCGGCCATCCGTATAATATT
Gene Information
NCBI Accession
|
NP_955743.1
|
Location
|
128-478 |
Gene Name
|
AV2 |
Protein Name
|
AV2 protein |
Coding Region
|
ATGTGGGATCCTTTACTAAACGAGTTTCCCGAGACCGTACATGGTTTCAGGTGTATGCTAGCAATTAAGTATTTGCAACTGGTAGAAAATACGTACTCTCCAGATACATTAGGGCACGACTTAATTCGTGATTTAATTTCAGTTATTCGTGCTAGAGATTATGTCGAAGCGACCCGCCGATATAGTCATTTCCACACCCGCATCCAAGGTGCGTCGCCGGCTGAATTTCGACAGCCCGTATGTCAGCCGTGCTGCTGCCCCCACTGTCCTCGTCACAAACAAAAGGAGGTCATGGGTGAATCGGCCCATGTACCGAAAGCCCAGGATGTACAGGATGTACAAAAGCCCTGA |
Protein Sequence
|
MWDPLLNEFPETVHGFRCMLAIKYLQLVENTYSPDTLGHDLIRDLISVIRARDYVEATRRYSHFHTRIQGASPAEFRQPVCQPCCCPHCPRHKQKEVMGESAHVPKAQDVQDVQKP |
NCBI Accession
|
NP_955744.1
|
Location
|
288-1061 |
Gene Name
|
AV1 |
Protein Name
|
AV1 protein |
Coding Region
|
ATGTCGAAGCGACCCGCCGATATAGTCATTTCCACACCCGCATCCAAGGTGCGTCGCCGGCTGAATTTCGACAGCCCGTATGTCAGCCGTGCTGCTGCCCCCACTGTCCTCGTCACAAACAAAAGGAGGTCATGGGTGAATCGGCCCATGTACCGAAAGCCCAGGATGTACAGGATGTACAAAAGCCCTGATGTGCCTCGTGGTTGTGAGGGTCCATGTAAGGTCCAGTCGTATGAACAGCGTCATGATGTAGCACACGTAGGTAAGGTAATTTGTGTGTCGGATGTTACCCGTGGTAATGGTTTGACTCATCGAGTCGGGAAGAGGTTTTGTGTTAAATCAGTCTATGTTTTGGGCAAGATATGGATGGATGAGAACATTAAGACCAAGAATCATACCAACACAGTCATGTTTTTTCTAGTTCGTGATAGGAGACCATTTGGCACTCCACAGGATTTTGGCCAGGTGTTTAACATGTATGATAATGAGCCTAGCACTGCTACTGTGAAGAACGACAACAGGGATCGCTTTCAAGTTCTACGGCGTTTTCAGGCGACTGTTACGGGTGGTCAGTATGCAAGTAAGGAGCAAGCAATAGTTAGGAAATTTATGAAGGTTAACAACCATGTGACTTATAACCATCAAGAGGCTGCGAAGTATGATAACCACACAGAGAATGCTTTGTTATTGTATATGGCATGTACTCATGCTAGTAATCCAGTGTATGCTACTTTGAAGATCAGGATCTATTTCTATGATTCTGTTCAGAATTAA |
Protein Sequence
|
MSKRPADIVISTPASKVRRRLNFDSPYVSRAAAPTVLVTNKRRSWVNRPMYRKPRMYRMYKSPDVPRGCEGPCKVQSYEQRHDVAHVGKVICVSDVTRGNGLTHRVGKRFCVKSVYVLGKIWMDENIKTKNHTNTVMFFLVRDRRPFGTPQDFGQVFNMYDNEPSTATVKNDNRDRFQVLRRFQATVTGGQYASKEQAIVRKFMKVNNHVTYNHQEAAKYDNHTENALLLYMACTHASNPVYATLKIRIYFYDSVQN |
NCBI Accession
|
NP_955745.1
|
Location
|
1058-1462 |
Gene Name
|
AC3 |
Protein Name
|
AC3 protein |
Coding Region
|
ATGGATTTTCGCACAGGGGAATTACTCACTGCAACTCAATGCGAGAGTGGCGTGTATACCTGGACGATCAAAAATCCCCTATATTTCAAGATAACCAAGCACCACGAGAGACCATTCAACACCAACCACGRCATCATAACGATCCAAATACAATTCAACCACAACCTGAGGAAAGCATTGGGAATACACCAGTGTTTTCTGATCTTCCAGATCTGGACTCGCTTACAACCTCAGACTTGGCGTTTCTTAAGAGTATTTAGGGTTCAATGTATGAAATATTTAGATAATATGGGTGTAATTAGTATTAACAATGTAATTAGAGCATGTAATCATGTATTATGGGATGTATTGGAGAAAACAGAATATGTAACACATTCTCATATAATAAAATTCAATCTTTATTAA |
Protein Sequence
|
MDFRTGELLTATQCESGVYTWTIKNPLYFKITKHHERPFNTNHXIITIQIQFNHNLRKALGIHQCFLIFQIWTRLQPQTWRFLRVFRVQCMKYLDNMGVISINNVIRACNHVLWDVLEKTEYVTHSHIIKFNLY |
NCBI Accession
|
NP_955746.1
|
Location
|
1203-1610 |
Gene Name
|
AC2 |
Protein Name
|
AC2 protein |
Coding Region
|
ATGCGGAATTCATCACCCTCAACAGCCCATTGTACTCAGGTACCAATCAAAGTGCAACACAGAATAGCCAAGAGGAGGCCCATTCGGAGACGGAGAGTTGATCTAACGTGCGGGTGCTCATACTACTTCGGCATAGATTGTGCAAATCATGGATTTTCGCACAGGGGAATTACTCACTGCAACTCAATGCGAGAGTGGCGTGTATACCTGGACGATCAAAAATCCCCTATATTTCAAGATAACCAAGCACCACGAGAGACCATTCAACACCAACCACGRCATCATAACGATCCAAATACAATTCAACCACAACCTGAGGAAAGCATTGGGAATACACCAGTGTTTTCTGATCTTCCAGATCTGGACTCGCTTACAACCTCAGACTTGGCGTTTCTTAAGAGTATTTAG |
Protein Sequence
|
MRNSSPSTAHCTQVPIKVQHRIAKRRPIRRRRVDLTCGCSYYFGIDCANHGFSHRGITHCNSMREWRVYLDDQKSPIFQDNQAPRETIQHQPRHHNDPNTIQPQPEESIGNTPVFSDLPDLDSLTTSDLAFLKSI |
NCBI Accession
|
NP_955747.1
|
Location
|
1510-2598 |
Gene Name
|
AC1 |
Protein Name
|
AC1 protein |
Coding Region
|
ATGCCTCAGCCAAAAAAATTTTTAATAAATGCCAAGAATTATTCCCTCACTTATCCACACTGCTCCCTTACTAAAGAAGAGGCATTTTCCCAAATCTCAGCCTTATCAACCCCGACTAATAAATTATTCATACGTATTTGCAGGGAACTACACGGAGATGGGTCTCCTCACCTGCATGTCCTCATACAGTTCGGAGGCAAATTCAAGTGCCAAAACAACAGATTCTTCGATCTCACCTCCCCAAGCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAAACCTCAACAGATGTTAAAGCATACATGGAAAAAGACGGAGACGTGCTTGATCATGGAGTTTTCCAAATCGATGGAAGATCAGCTAGAGGAGGTTGCCAATCTGCCAACGACGCATATGCCGAGGCAATCAATGCAAGGTCCAAACCAGCGGCCCTCAATATATTAAAGGAGAAGGCTCCTAAAGATTTCGTTTTACAGTTTCATAATTTAAATAGTAATTTAGATAGGATTTTTGCACCTCCTATAGAGGTTTTTGTTTGTCCTTTTCTTTCTTCTTCATTCGATCAAGTTCCAGAAGAACTTGAAGAGTGGGTTTCTGAGAACGTGAGTGGTGCCGCTGCGCGGCCGTGGAGACCCAAGAGTATTGTGATAGAAGGTGATAGTCGTACGGGTAAAACAATGTGGGCCAGATCACTGGGACCACACAATTATTTGTGTGGACATCTTGATCTAAGCCCAAAAGTATACAGTAATGATGCTTGGTATAACGTCATTGATGACGTAGACCCCCACTATCTAAAGCACTTTAAAGAATTCATGGGGGCCCAAAGGGACTGGCAAAGCAACACTAAGTACGGGAAAGCCATTCAAATTAAAGGTGGAATCCCAACTATCTTCCTATGCAATCCAGGCCCAACATCATCATATAAAGAGTACTTGAATGAGGATAAAAATTCAGCATTAAAAGATTGGGCATTAAAGAATGCGGAATTCATCACCCTCAACAGCCCATTGTACTCAGGTACCAATCAAAGTGCAACACAGAATAGCCAAGAGGAGGCCCATTCGGAGACGGAGAGTTGA |
Protein Sequence
|
MPQPKKFLINAKNYSLTYPHCSLTKEEAFSQISALSTPTNKLFIRICRELHGDGSPHLHVLIQFGGKFKCQNNRFFDLTSPSRSAHFHPNIQGAKTSTDVKAYMEKDGDVLDHGVFQIDGRSARGGCQSANDAYAEAINARSKPAALNILKEKAPKDFVLQFHNLNSNLDRIFAPPIEVFVCPFLSSSFDQVPEELEEWVSENVSGAAARPWRPKSIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKAIQIKGGIPTIFLCNPGPTSSYKEYLNEDKNSALKDWALKNAEFITLNSPLYSGTNQSATQNSQEEAHSETES |
NCBI Accession
|
NP_955748.1
|
Location
|
2148-2441 |
Gene Name
|
AC4 |
Protein Name
|
AC4 protein |
Coding Region
|
ATGGGTCTCCTCACCTGCATGTCCTCATACAGTTCGGAGGCAAATTCAAGTGCCAAAACAACAGATTCTTCGATCTCACCTCCCCAAGCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAAACCTCAACAGATGTTAAAGCATACATGGAAAAAGACGGAGACGTGCTTGATCATGGAGTTTTCCAAATCGATGGAAGATCAGCTAGAGGAGGTTGCCAATCTGCCAACGACGCATATGCCGAGGCAATCAATGCAAGGTCCAAACCAGCGGCCCTCAATATATTAA |
Protein Sequence
|
MGLLTCMSSYSSEANSSAKTTDSSISPPQAGQHISIRTFRELKPQQMLKHTWKKTETCLIMEFSKSMEDQLEEVANLPTTHMPRQSMQGPNQRPSIY |