Oxalis yellow vein virus
Basic Information
| Genus |
Begomovirus
|
| NCBI Assembly |
GCF_000928355.1 |
| Isolate |
USA |
| Release date |
2015/2/22 |
| Submitter |
Herrera,F., Aboughanem-Sabanadzovic,N., Valverde,R. |
| Host |
|
| Vector |
|
| Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCGGATGGCCGCGCGATTTTGCCCCCCTCCCTACGTGGCGCTCTGGTGGCCGCGCGATCGCTTTCCCCCCCCTCGCGATCGCTTTTTCTCTCTCGCGCGCGTCTCTCCTTTAATTTGAATTAAAGGAAATTATTTTTGTTGGACCAATAAGCTGGCGCCTGACGAGCTTAGATATCTGTGTTAAGACTTGGTCACTAAGTTTTATGACGCTATAAAACTAAAGCAAGCATGACGTCATGGATTATTTCGAAATGCCTAAGCGCGATCCCTCATGGCGCCAGATGGCGGGAACCTCAAAGGTCAGCCGTTCTTCCAATTTTTCCCCTCGTGGAGGTGGAGGCCCAAAATTTAATAAGGCCTCGGAATGGGTTAACAGGCCCATGTACAGGAAGCCCAGGATATATCGGACGCTGAGAACGCCTGATGTCCCTAGAGGCTGTGAAGGGCCCTGTAAGGTCCAGTCATACGAGCAGCGTCACGATATCTCTCATACTGGTAAGGTGATGTGCGTATCTGATGTGACACGTGGTAACGGTATAACCCACCGTGTCGGTAAACGTTTCTGTGTTAAGTCCGTATACATTTTAGGTAAGGTGTGGATGGATGAGAACATCAAGCTCAAGAACCACACGAACAGTTGTATGTTCTGGTTGGTCAGGGATCGTAGACCGTATGGCACACCAATGGACTTTGGCCAGGTGTTCAATATGTTCGATAACGAGCCTAGCACTGCAACCGTCAAGAACGATCTCCGTGATCGTTTCCAAGTTATGCACAAGTTCTATGCCAAAGTCACTGGTGGACAATATGCCAGCAATGAGCAGGCGCTGGTCAAGCGGTTCTGGAAGGTCAACAATCATGTGGTCTACAACCATCAAGAAGTCGGGAAGTACGAGAATCATACGGAGAACGCATTACTATTGTACATGGCATGTACTCATGCCTCTAACCCTGTGTATGCAACGCTCAAGATTCGAATCTATTTCTACGATTCGATCACAAATTAATAAAATTTGAATTTTATTGAATGATTTTCCAGTACATATCTGACATAAGATGTGTCAGTTGCGAAACGAACAGCTCTAATTACATTATCAAGCGCAATTACACCTAATTGTTCTAAGTACATCATGACTAAATGCCTAAACCTAGTCAAATAAGTCTTCCCAGAAGCTATCAGAGATGTCGTCCAGACTTGGAAGTTGAGGAATGCCTTGTGGAGACCCAATGCTCTCCTGAGGTTGTGGTTGAACCTTATCTGGATGTGGTACACTCTGGTCCTGCTGAACAGCAGGTCTTCTACTCGGCACATCTTGAAATACAGGGGATTTGTTATCTCCCGGATATAGACGCCATTCTCTGCCTGACGCGCAGTGATGAGTTCCCCGGTGCGTGAATCCATTGTTGCTGCAGTTGATGTGGACGTATATGGAGCACCCGCAGTCAAGGTCAACTCTCCTACGACGAGGTGCTCTCTTCGCAATCTTGTGTCGCGGTTTGATAGAGGGGGGAGTCGAGGAAGATGAATTGAGCATTTTTTAATGTCCAGGCTCTCAGTGATGCGTTTTCCTCTTTTTCGAGGAAATCTTTATAACTGGCCCCCTCTCCAGGATTGCAGAGCACGATTGATGGGATACCCCCTTTAATTTGAACAGGCTTGCCGTATTTACAATTTGACTGCCAGTCCTTTTGGGCCCCAATCAATTCCTTCCAATGCTTTAGCTTTAGGTATTGGGGACTGACGTCATCGATGACGTTATGCTCCACATCGTTGGAGTAGACCCGGGAATTGAAGTCCAGATGGCCACTCAAGTAATTATGTGGGCCTAAAGCACGAGCCCACATCGTCTTGCCAGTTCTTGAACCACCTTCAACTATCAAACTTATGGGCCTCTCTGGCCGCGCAGCGGAACCCCTCCCAAAATAATCGTCAGCCCACTCTTGCATCTGGTTGGGCACGTTAGTGAATGAGGAAAGGGGAAATGGAGGGGCCCATGGCTCTGGAGGCTTGATGAAAATCCTGTCCAGGTTACTTGATAGGTTGTGATACTGGAAAAGAAACTTTTCCGGCAACTTCTCTTTAATGATTTTCATCGCCTCCTCCTTCGACGGCGCATTTAACGCCTCAGCTGCAGCGTCATTAGCTGTCTGTTGACCTCCCCTAGAACTTCTGCCGTCGATCTGAAACTCACCCCATTCGAGGGTGTCTCCGTCCTTGTCGATGTAGGACTTGACGTCGGAGCTCGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCGTGATGGGGAAACCAGGTCGAACAGTCTGTTATTTGTGATCTGGACCTTTCCCTCCAATTGCAACAGGATGTGGAGGTGAGGTTGCCCATCGTCGTGAAGCTCTCTGCAGATCTTGATGAACTTTTTATTGGAGGGTAATTGAACAGCTTGCAATTGGGAAAGTGCTTCCTCTTTTGTAAGAGAGCACTGAGGATAAGTCAGGAAAATATTTTTAGCTTGGAGTCTAAAACGACGTGGTTTGGATGGCATTTTTGTAAATAAGAGGGTGTACTCTAGTTGAGAGCTCGCTCATAAGTTGGTATGTATTGGAGTATTGGAGTGCAATATATAGTGGAAGTTCCCAAGGGGCACGTGGCGGCCATCCGTATAATATT
Gene Information
|
NCBI Accession
|
YP_009116885.1
|
|
Location
|
238-1008 |
|
Gene Name
|
AV1 |
|
Protein Name
|
coat protein |
|
Coding Region
|
ATGGATTATTTCGAAATGCCTAAGCGCGATCCCTCATGGCGCCAGATGGCGGGAACCTCAAAGGTCAGCCGTTCTTCCAATTTTTCCCCTCGTGGAGGTGGAGGCCCAAAATTTAATAAGGCCTCGGAATGGGTTAACAGGCCCATGTACAGGAAGCCCAGGATATATCGGACGCTGAGAACGCCTGATGTCCCTAGAGGCTGTGAAGGGCCCTGTAAGGTCCAGTCATACGAGCAGCGTCACGATATCTCTCATACTGGTAAGGTGATGTGCGTATCTGATGTGACACGTGGTAACGGTATAACCCACCGTGTCGGTAAACGTTTCTGTGTTAAGTCCGTATACATTTTAGGTAAGGTGTGGATGGATGAGAACATCAAGCTCAAGAACCACACGAACAGTTGTATGTTCTGGTTGGTCAGGGATCGTAGACCGTATGGCACACCAATGGACTTTGGCCAGGTGTTCAATATGTTCGATAACGAGCCTAGCACTGCAACCGTCAAGAACGATCTCCGTGATCGTTTCCAAGTTATGCACAAGTTCTATGCCAAAGTCACTGGTGGACAATATGCCAGCAATGAGCAGGCGCTGGTCAAGCGGTTCTGGAAGGTCAACAATCATGTGGTCTACAACCATCAAGAAGTCGGGAAGTACGAGAATCATACGGAGAACGCATTACTATTGTACATGGCATGTACTCATGCCTCTAACCCTGTGTATGCAACGCTCAAGATTCGAATCTATTTCTACGATTCGATCACAAATTAA |
|
Protein Sequence
|
MDYFEMPKRDPSWRQMAGTSKVSRSSNFSPRGGGGPKFNKASEWVNRPMYRKPRIYRTLRTPDVPRGCEGPCKVQSYEQRHDISHTGKVMCVSDVTRGNGITHRVGKRFCVKSVYILGKVWMDENIKLKNHTNSCMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATVKNDLRDRFQVMHKFYAKVTGGQYASNEQALVKRFWKVNNHVVYNHQEVGKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSITN |
|
NCBI Accession
|
YP_009116880.1
|
|
Location
|
586-903 |
|
Protein Name
|
C5 |
|
Coding Region
|
ATGATTCTCGTACTTCCCGACTTCTTGATGGTTGTAGACCACATGATTGTTGACCTTCCAGAACCGCTTGACCAGCGCCTGCTCATTGCTGGCATATTGTCCACCAGTGACTTTGGCATAGAACTTGTGCATAACTTGGAAACGATCACGGAGATCGTTCTTGACGGTTGCAGTGCTAGGCTCGTTATCGAACATATTGAACACCTGGCCAAAGTCCATTGGTGTGCCATACGGTCTACGATCCCTGACCAACCAGAACATACAACTGTTCGTGTGGTTCTTGAGCTTGATGTTCTCATCCATCCACACCTTACCTAA |
|
Protein Sequence
|
MILVLPDFLMVVDHMIVDLPEPLDQRLLIAGILSTSDFGIELVHNLETITEIVLDGCSARLVIEHIEHLAKVHWCAIRSTIPDQPEHTTVRVVLELDVLIHPHLT |
|
NCBI Accession
|
YP_009116881.1
|
|
Location
|
1005-1403 |
|
Protein Name
|
replication enhancer protein |
|
Coding Region
|
ATGGATTCACGCACCGGGGAACTCATCACTGCGCGTCAGGCAGAGAATGGCGTCTATATCCGGGAGATAACAAATCCCCTGTATTTCAAGATGTGCCGAGTAGAAGACCTGCTGTTCAGCAGGACCAGAGTGTACCACATCCAGATAAGGTTCAACCACAACCTCAGGAGAGCATTGGGTCTCCACAAGGCATTCCTCAACTTCCAAGTCTGGACGACATCTCTGATAGCTTCTGGGAAGACTTATTTGACTAGGTTTAGGCATTTAGTCATGATGTACTTAGAACAATTAGGTGTAATTGCGCTTGATAATGTAATTAGAGCTGTTCGTTTCGCAACTGACACATCTTATGTCAGATATGTACTGGAAAATCATTCAATAAAATTCAAATTTTATTAA |
|
Protein Sequence
|
MDSRTGELITARQAENGVYIREITNPLYFKMCRVEDLLFSRTRVYHIQIRFNHNLRRALGLHKAFLNFQVWTTSLIASGKTYLTRFRHLVMMYLEQLGVIALDNVIRAVRFATDTSYVRYVLENHSIKFKFY |
|
NCBI Accession
|
YP_009116882.1
|
|
Location
|
1150-1536 |
|
Protein Name
|
transcriptional activator protein |
|
Coding Region
|
ATGCTCAATTCATCTTCCTCGACTCCCCCCTCTATCAAACCGCGACACAAGATTGCGAAGAGAGCACCTCGTCGTAGGAGAGTTGACCTTGACTGCGGGTGCTCCATATACGTCCACATCAACTGCAGCAACAATGGATTCACGCACCGGGGAACTCATCACTGCGCGTCAGGCAGAGAATGGCGTCTATATCCGGGAGATAACAAATCCCCTGTATTTCAAGATGTGCCGAGTAGAAGACCTGCTGTTCAGCAGGACCAGAGTGTACCACATCCAGATAAGGTTCAACCACAACCTCAGGAGAGCATTGGGTCTCCACAAGGCATTCCTCAACTTCCAAGTCTGGACGACATCTCTGATAGCTTCTGGGAAGACTTATTTGACTAG |
|
Protein Sequence
|
MLNSSSSTPPSIKPRHKIAKRAPRRRRVDLDCGCSIYVHINCSNNGFTHRGTHHCASGREWRLYPGDNKSPVFQDVPSRRPAVQQDQSVPHPDKVQPQPQESIGSPQGIPQLPSLDDISDSFWEDLFD |
|
NCBI Accession
|
YP_009116883.1
|
|
Location
|
1460-2536 |
|
Protein Name
|
replication-associated protein |
|
Coding Region
|
ATGCCATCCAAACCACGTCGTTTTAGACTCCAAGCTAAAAATATTTTCCTGACTTATCCTCAGTGCTCTCTTACAAAAGAGGAAGCACTTTCCCAATTGCAAGCTGTTCAATTACCCTCCAATAAAAAGTTCATCAAGATCTGCAGAGAGCTTCACGACGATGGGCAACCTCACCTCCACATCCTGTTGCAATTGGAGGGAAAGGTCCAGATCACAAATAACAGACTGTTCGACCTGGTTTCCCCATCACGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCGAGCTCCGACGTCAAGTCCTACATCGACAAGGACGGAGACACCCTCGAATGGGGTGAGTTTCAGATCGACGGCAGAAGTTCTAGGGGAGGTCAACAGACAGCTAATGACGCTGCAGCTGAGGCGTTAAATGCGCCGTCGAAGGAGGAGGCGATGAAAATCATTAAAGAGAAGTTGCCGGAAAAGTTTCTTTTCCAGTATCACAACCTATCAAGTAACCTGGACAGGATTTTCATCAAGCCTCCAGAGCCATGGGCCCCTCCATTTCCCCTTTCCTCATTCACTAACGTGCCCAACCAGATGCAAGAGTGGGCTGACGATTATTTTGGGAGGGGTTCCGCTGCGCGGCCAGAGAGGCCCATAAGTTTGATAGTTGAAGGTGGTTCAAGAACTGGCAAGACGATGTGGGCTCGTGCTTTAGGCCCACATAATTACTTGAGTGGCCATCTGGACTTCAATTCCCGGGTCTACTCCAACGATGTGGAGCATAACGTCATCGATGACGTCAGTCCCCAATACCTAAAGCTAAAGCATTGGAAGGAATTGATTGGGGCCCAAAAGGACTGGCAGTCAAATTGTAAATACGGCAAGCCTGTTCAAATTAAAGGGGGTATCCCATCAATCGTGCTCTGCAATCCTGGAGAGGGGGCCAGTTATAAAGATTTCCTCGAAAAAGAGGAAAACGCATCACTGAGAGCCTGGACATTAAAAAATGCTCAATTCATCTTCCTCGACTCCCCCCTCTATCAAACCGCGACACAAGATTGCGAAGAGAGCACCTCGTCGTAG |
|
Protein Sequence
|
MPSKPRRFRLQAKNIFLTYPQCSLTKEEALSQLQAVQLPSNKKFIKICRELHDDGQPHLHILLQLEGKVQITNNRLFDLVSPSRSAHFHPNIQGAKSSSDVKSYIDKDGDTLEWGEFQIDGRSSRGGQQTANDAAAEALNAPSKEEAMKIIKEKLPEKFLFQYHNLSSNLDRIFIKPPEPWAPPFPLSSFTNVPNQMQEWADDYFGRGSAARPERPISLIVEGGSRTGKTMWARALGPHNYLSGHLDFNSRVYSNDVEHNVIDDVSPQYLKLKHWKELIGAQKDWQSNCKYGKPVQIKGGIPSIVLCNPGEGASYKDFLEKEENASLRAWTLKNAQFIFLDSPLYQTATQDCEESTSS |
|
NCBI Accession
|
YP_009116884.1
|
|
Location
|
2119-2376 |
|
Protein Name
|
C4 |
|
Coding Region
|
ATGGGCAACCTCACCTCCACATCCTGTTGCAATTGGAGGGAAAGGTCCAGATCACAAATAACAGACTGTTCGACCTGGTTTCCCCATCACGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCGAGCTCCGACGTCAAGTCCTACATCGACAAGGACGGAGACACCCTCGAATGGGGTGAGTTTCAGATCGACGGCAGAAGTTCTAGGGGAGGTCAACAGACAGCTAATGACGCTGCAGCTGAGGCGTTAA |
|
Protein Sequence
|
MGNLTSTSCCNWRERSRSQITDCSTWFPHHGQHISIRTFRELNRAPTSSPTSTRTETPSNGVSFRSTAEVLGEVNRQLMTLQLRR |