Okra yellow mosaic Mexico virus
Basic Information
Genus |
Begomovirus
|
NCBI Assembly |
GCF_000889735.1 |
Isolate |
Mexico: Morelos |
Release date |
2015/2/22 |
Submitter |
De La Torre-Almaraz,R., Monsalvo-Reyes,A., Ambriz-Granados,S., Arguello-Astorga,G.R., Monsalvo-Reyes,R., De la Torre-Almaraz,R., Mauricio-Castillo,J.A. |
Host |
|
Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCGGATGGCCGCGCGATTTTTTTGCCCCCTCGTGCGTTCGCCTCTCTTTAATTTGAATTAAAGCGTTCCGCTTTCGTCTCGTCCAATCAGGTAACGTCTGACGAGCTAAGATATTTCAAACAACTTGGGCGCCAAGTTGTTGGGTTTCGGTTATAAATTAAAGAGGCTTTGGCCCACTGGATTTAATTCAAAATGCCTAAGCGCGATCTCCCATGGCGCTCGATCGCGGGAACCTCAAAGGTGAGCCGCAATGCTAATTATTCTCCTCGTGCAGGAAGTGGGCCAAGAGTTAACAAGGCCTCTGAATGGGTGAACAGGCCCATGTACAGGAAGCCCAGGATCTACCGGACAATGAGAACGCCCGACGTGCCAAGAGGCTGTGAAGGGCCTTGCAAGGTCCAGTCCTTTGAACAGCGTCATGATGTCTCTCACGTGGGTAAGGTCATTTGTATATCTGATGTGACACGTGGTAATGGTATCACTCACCGTGTAGGTAAGCGTTTCTGTGTTAAGTCTGTGTATATCCTCGGTAAGATCTGGATGGATGAGAACATCAAGCTCAAGAACCACACGAACAGTGTTATGTTCTGGTTGGTCAGGGATCGTAGACCGTATGGCACGCCCATGGATTTCGGGCAAGTGTTCAACATGTTCGACAACGAGCCTAGCACTGCCACGGTGAAGAACGACCTACGCGACCGCTACCAGGTGATGCACAAGTTTTACGGCAAGGTGACAGGTGGACAGTATGCCAGCAACGAGCAGGCGATAGTCAAGCGCTTCTGGAAGGTCAACAATCATGTGGTGTACAACCACCAGGAAGCTGGCAAGTACGAGAATCACACGGAGAATGCTTTGTTATTGTATATGGCATGTACTCATGCCTCTAACCCTGTATATGCAACGCTTAAGATTCGGATCTACTTCTACGATTCGATCATGAATTAATAAAGTTTAAATTTTATTGAATGATTTTCCAGCACATAATTTACATAAGATCTATCCGTTGCGAAACGAACAGCTCTGATTACATTGTTAAGTGAAATTACGCCTAATCGATCTAAATACAAATTAACTAAGTGCATAAACCTAGCTAAATAAGTCGACCCAGAAGCTGTCATCGATGTCGTCCAGACTTGGAAGTTCAGGTAGGCCTTGTGGAGATGCAACGCTCTCCTCAGGTTGTGGTTGAACCGTATTTGTACGTGGTATACTCTGGTCCTCGTGTATAGTGGATCTTCTACTCGGTACATCTTGAAATACAGGGGATTTTCTATCTCCCAGATATAGACGCCATTCTCGCTCTGAGGTGCAGTGATGAGTTCCCCTGTGCGTGAATCCATGACCCGTACAGCCTATGTGTAAGTATATGGAGCACCCGCACTCCAGATCAATCCGCCTCCTCCTGATGGCTCTCCTCTTGGCTTGCCTGTGTGCTGTCTTGATAGAGGGCGGATGTGAGGGTGATGAAGAGCGCATTCTTGATGGTCCAGTTCCTGAGTGATGCGTTTTCCTCTTTGTCGAGGAAATCTTTATAGCTTGCACCCTCACCTGGATTGCAAAGCACGATTGATGGGATACCTCCTTTAATTTGAACTGGCTTGCCGTATTTGCAATTTGACTGCCAATCCTTTTGGGCCCCGATCAATTCTTTCCAGTGCTTTAGCTTTAGATAGTGCGGTGCGACGTCGTCAATGACGTTATACTCCACTTCGTTTGAATAGACTCGTGGGTTGAAGTCCAGGTGTCCACTGAGGTAGTTATGTGGGCCTAGCGCACGTGCCCACATTGTCTTTCCGGTCCTCGAATCACCTTCAACGATGATACTAACTGGTCTCTCAGGCCGCGCAGCGGGATCCCTTCCAAAATATTCATCGACCCACTCTTGCATCTCGTCAGGCACGTTAGTGAACGAGGAGAGTTGAAACGGAGGGACCCATGGTTCCGGAGCCTTTTGGAATATTTTGGTGGCGTTGGCGACGAGGTTGTGGTGCTGAAGGAAGAAATGTTGCGGTTGTTCTTCTTTGATAATACGCAGCGCTTCCTCCGCCGACGATGCATTCAACGCCTTGGCATATGTATCGTTAGCTGATTGCTGGCCTCCTCTAGCAGATCTGCCGTCGATCTGAAATTCTCCCCATTCGATTGTATCTCCGTCCTTGTCGATATAGGATTTGACGTCGGAGCTGGATTTAGTTCCCTGAATGTTCGGATGGAAATGTGCTGACCGACTTGGGGACACCAGGTCGAAGAATCTGTTATTCGTGCATCTGTATTTCCCCTCGAACTGGATAAGGACGTGCAGATGAGGTTGCCCATCTTCGTGAAGTTCTCTGCAGATTTTGATGAATTTCTTGTTGACCGGAGTGTTTAGGTTTTGTAATTGGGAAAGTGCCTCTTCTTTTGTAAGAGAACACTGTGGATATGTGAGGAAATAGTTTTTCTGATTTATCTGAAATCGTTTAGGCGGTGGCATATTTGTAAATAAGAGAGTGTGTACCAATTGAGCTCTCTCAAAACTTAGCAAATGAATTGGTACACAGGTACACAATATATAGTAGAACCCTCATTAACGGATTTGTGACACTTGGCGGCCATCCGCTATAATATT
Gene Information
NCBI Accession
|
YP_003587818.1
|
Location
|
194-949 |
Gene Name
|
cp |
Protein Name
|
coat protein |
Coding Region
|
ATGCCTAAGCGCGATCTCCCATGGCGCTCGATCGCGGGAACCTCAAAGGTGAGCCGCAATGCTAATTATTCTCCTCGTGCAGGAAGTGGGCCAAGAGTTAACAAGGCCTCTGAATGGGTGAACAGGCCCATGTACAGGAAGCCCAGGATCTACCGGACAATGAGAACGCCCGACGTGCCAAGAGGCTGTGAAGGGCCTTGCAAGGTCCAGTCCTTTGAACAGCGTCATGATGTCTCTCACGTGGGTAAGGTCATTTGTATATCTGATGTGACACGTGGTAATGGTATCACTCACCGTGTAGGTAAGCGTTTCTGTGTTAAGTCTGTGTATATCCTCGGTAAGATCTGGATGGATGAGAACATCAAGCTCAAGAACCACACGAACAGTGTTATGTTCTGGTTGGTCAGGGATCGTAGACCGTATGGCACGCCCATGGATTTCGGGCAAGTGTTCAACATGTTCGACAACGAGCCTAGCACTGCCACGGTGAAGAACGACCTACGCGACCGCTACCAGGTGATGCACAAGTTTTACGGCAAGGTGACAGGTGGACAGTATGCCAGCAACGAGCAGGCGATAGTCAAGCGCTTCTGGAAGGTCAACAATCATGTGGTGTACAACCACCAGGAAGCTGGCAAGTACGAGAATCACACGGAGAATGCTTTGTTATTGTATATGGCATGTACTCATGCCTCTAACCCTGTATATGCAACGCTTAAGATTCGGATCTACTTCTACGATTCGATCATGAATTAA |
Protein Sequence
|
MPKRDLPWRSIAGTSKVSRNANYSPRAGSGPRVNKASEWVNRPMYRKPRIYRTMRTPDVPRGCEGPCKVQSFEQRHDVSHVGKVICISDVTRGNGITHRVGKRFCVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATVKNDLRDRYQVMHKFYGKVTGGQYASNEQAIVKRFWKVNNHVVYNHQEAGKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSIMN |
NCBI Accession
|
YP_003587819.1
|
Location
|
946-1344 |
Gene Name
|
AC3 |
Protein Name
|
replication enhancer protein |
Coding Region
|
ATGGATTCACGCACAGGGGAACTCATCACTGCACCTCAGAGCGAGAATGGCGTCTATATCTGGGAGATAGAAAATCCCCTGTATTTCAAGATGTACCGAGTAGAAGATCCACTATACACGAGGACCAGAGTATACCACGTACAAATACGGTTCAACCACAACCTGAGGAGAGCGTTGCATCTCCACAAGGCCTACCTGAACTTCCAAGTCTGGACGACATCGATGACAGCTTCTGGGTCGACTTATTTAGCTAGGTTTATGCACTTAGTTAATTTGTATTTAGATCGATTAGGCGTAATTTCACTTAACAATGTAATCAGAGCTGTTCGTTTCGCAACGGATAGATCTTATGTAAATTATGTGCTGGAAAATCATTCAATAAAATTTAAACTTTATTAA |
Protein Sequence
|
MDSRTGELITAPQSENGVYIWEIENPLYFKMYRVEDPLYTRTRVYHVQIRFNHNLRRALHLHKAYLNFQVWTTSMTASGSTYLARFMHLVNLYLDRLGVISLNNVIRAVRFATDRSYVNYVLENHSIKFKLY |
NCBI Accession
|
YP_003587820.1
|
Location
|
1091-1480 |
Gene Name
|
AC2 |
Protein Name
|
transcription activator protein |
Coding Region
|
ATGCGCTCTTCATCACCCTCACATCCGCCCTCTATCAAGACAGCACACAGGCAAGCCAAGAGGAGAGCCATCAGGAGGAGGCGGATTGATCTGGAGTGCGGGTGCTCCATATACTTACACATAGGCTGTACGGGTCATGGATTCACGCACAGGGGAACTCATCACTGCACCTCAGAGCGAGAATGGCGTCTATATCTGGGAGATAGAAAATCCCCTGTATTTCAAGATGTACCGAGTAGAAGATCCACTATACACGAGGACCAGAGTATACCACGTACAAATACGGTTCAACCACAACCTGAGGAGAGCGTTGCATCTCCACAAGGCCTACCTGAACTTCCAAGTCTGGACGACATCGATGACAGCTTCTGGGTCGACTTATTTAGCTAG |
Protein Sequence
|
MRSSSPSHPPSIKTAHRQAKRRAIRRRRIDLECGCSIYLHIGCTGHGFTHRGTHHCTSEREWRLYLGDRKSPVFQDVPSRRSTIHEDQSIPRTNTVQPQPEESVASPQGLPELPSLDDIDDSFWVDLFS |
NCBI Accession
|
YP_003587821.1
|
Location
|
1392-2477 |
Gene Name
|
AC1 |
Protein Name
|
replication initiator protein |
Coding Region
|
ATGCCACCGCCTAAACGATTTCAGATAAATCAGAAAAACTATTTCCTCACATATCCACAGTGTTCTCTTACAAAAGAAGAGGCACTTTCCCAATTACAAAACCTAAACACTCCGGTCAACAAGAAATTCATCAAAATCTGCAGAGAACTTCACGAAGATGGGCAACCTCATCTGCACGTCCTTATCCAGTTCGAGGGGAAATACAGATGCACGAATAACAGATTCTTCGACCTGGTGTCCCCAAGTCGGTCAGCACATTTCCATCCGAACATTCAGGGAACTAAATCCAGCTCCGACGTCAAATCCTATATCGACAAGGACGGAGATACAATCGAATGGGGAGAATTTCAGATCGACGGCAGATCTGCTAGAGGAGGCCAGCAATCAGCTAACGATACATATGCCAAGGCGTTGAATGCATCGTCGGCGGAGGAAGCGCTGCGTATTATCAAAGAAGAACAACCGCAACATTTCTTCCTTCAGCACCACAACCTCGTCGCCAACGCCACCAAAATATTCCAAAAGGCTCCGGAACCATGGGTCCCTCCGTTTCAACTCTCCTCGTTCACTAACGTGCCTGACGAGATGCAAGAGTGGGTCGATGAATATTTTGGAAGGGATCCCGCTGCGCGGCCTGAGAGACCAGTTAGTATCATCGTTGAAGGTGATTCGAGGACCGGAAAGACAATGTGGGCACGTGCGCTAGGCCCACATAACTACCTCAGTGGACACCTGGACTTCAACCCACGAGTCTATTCAAACGAAGTGGAGTATAACGTCATTGACGACGTCGCACCGCACTATCTAAAGCTAAAGCACTGGAAAGAATTGATCGGGGCCCAAAAGGATTGGCAGTCAAATTGCAAATACGGCAAGCCAGTTCAAATTAAAGGAGGTATCCCATCAATCGTGCTTTGCAATCCAGGTGAGGGTGCAAGCTATAAAGATTTCCTCGACAAAGAGGAAAACGCATCACTCAGGAACTGGACCATCAAGAATGCGCTCTTCATCACCCTCACATCCGCCCTCTATCAAGACAGCACACAGGCAAGCCAAGAGGAGAGCCATCAGGAGGAGGCGGATTGA |
Protein Sequence
|
MPPPKRFQINQKNYFLTYPQCSLTKEEALSQLQNLNTPVNKKFIKICRELHEDGQPHLHVLIQFEGKYRCTNNRFFDLVSPSRSAHFHPNIQGTKSSSDVKSYIDKDGDTIEWGEFQIDGRSARGGQQSANDTYAKALNASSAEEALRIIKEEQPQHFFLQHHNLVANATKIFQKAPEPWVPPFQLSSFTNVPDEMQEWVDEYFGRDPAARPERPVSIIVEGDSRTGKTMWARALGPHNYLSGHLDFNPRVYSNEVEYNVIDDVAPHYLKLKHWKELIGAQKDWQSNCKYGKPVQIKGGIPSIVLCNPGEGASYKDFLDKEENASLRNWTIKNALFITLTSALYQDSTQASQEESHQEEAD |
NCBI Accession
|
YP_003587822.1
|
Location
|
2063-2320 |
Gene Name
|
AC4 |
Protein Name
|
AC4 |
Coding Region
|
ATGGGCAACCTCATCTGCACGTCCTTATCCAGTTCGAGGGGAAATACAGATGCACGAATAACAGATTCTTCGACCTGGTGTCCCCAAGTCGGTCAGCACATTTCCATCCGAACATTCAGGGAACTAAATCCAGCTCCGACGTCAAATCCTATATCGACAAGGACGGAGATACAATCGAATGGGGAGAATTTCAGATCGACGGCAGATCTGCTAGAGGAGGCCAGCAATCAGCTAACGATACATATGCCAAGGCGTTGA |
Protein Sequence
|
MGNLICTSLSSSRGNTDARITDSSTWCPQVGQHISIRTFRELNPAPTSNPISTRTEIQSNGENFRSTADLLEEASNQLTIHMPRR |