Okra leaf curl Oman virus


Basic Information

Genus Begomovirus
NCBI Assembly GCF_001504015.1
Isolate Oman:Barka
Release date 2016/1/7
Submitter Khan,A.J., Akhtar,S.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization


JBrowse


Genome

NC_028985
ACCGGATGGCCGCGCGATTTTTTTTGTGGTCCCCGCCCCACGTGAACACGTCGCGCGAGTTCTGAAGATGTCGCGCGATGCTGTCCAATCAGAACGCGCGCTCTACGCATTATAATTTGAAATTTGAAATATAAACTTGCTCCCCTAAGTTTGTCCGGCATAACTATGTGGGATCCGTTATTGAACGACTTCCCTGAATCCGTTCACGGTTTCCGTTGTATGCTCGCCGTGAAATATTTGCAGGCTGTTCGAGAGTCGTACGATCCTTGCACTCTTGGGTACGATCTTCTTAGCGATCTTATCGGAGTTGTTCGCCGTACCAACTATGTCGAAGCGACCAGCAGATATCATCATTTCCACTCCCGCCTCGAAAGTGCGTCGCCGTCTGAACTTCGACAGCCCCGGGTTATCCTCTGCACGTGCCCCCACTGTCCTCGTCACAAACAAGCGTCGGGCCTGGAACAACAGGCCCCTATACAGAAAACCGAGGATTTATCGAATTTATCGCAGCCCAGATGTCCCAAAGGGATGTGAAGGTCCTTGTAAGGTCCAGTCTTATGAACAGCGTGATGATGTCAAGCATACGGGCATTGTTCGATGTGTGTCGGATGTTACTAAGGGTGTTGGTCTTACTCATCGTACTGGAAAGCGTTTCACTATCAAATCTATCTATATTCTTGGTAAGGTATGGATGGATGACAACATTAAGAAGCAGAATCACACCAACAATGTAATGTTTTTCCTTGTCCGTGATAGAAGACCCTATGGCAATAGTCCCATGGATTTTGGACAGGTTTTTCACATGTTTGACAACGAACCTAGCACTGCCACTGTAAAGAATGATTTGCGAGATCGTTTTCAGGTGATGCGTAAGTTTAGTGCTACTGTAACTGGTGGCCCTTCTGGGATGAAGGAACAAGTTCCTGTTCGTAGGTTTTTTAAGCTTAATAGTCAGACTGTGTATAACCATCAAGAAGCTGCGAAGTATGAGAATCATACTGAGAATGCTTTGTTGTTGTATATGGCATGTACTCATGCCTCAAACCCTGTGTATGCTACGTTAAAGATACGGATCTATTTCTACGATTCGGTATCTAATTAATATAATTTTATTTGAATATTGTGCGTGAATTCACTTGCCACGGTTGTTTGCAATACATCGTACAAAACATGATTGACTGCCCTAATTACATTGTTAATTGAAATTACGCCTATTCTATACAAATATTTCATAATCTGCTTCCTAAATACGTTTAAGAAAAGACCAGTCGGAGGGCGTGAGATCGTCCAGACCCTGAAGTTCATGAAACATTTGTGAATCCCCAATTCCTTCCTGAGGTTGTAGTTGAATCTTATCTGCATCTCTACCATTGTTTGATTCCCGTGCGTTAGAGGAATCTCCTTTATGGTTTTGAAATACAGGGGATTGTTGATTGTCCAGATAAGTACGCCATTCTCTGTCTGATGCGCAGTGATGAGTTCCCCTGTGCGTGAATCCATTGTCTCTGCACGTGAAGGCTACGTATACTGTGCAACCACAAGGGATGTCAATCCTGCGTCTCCTGATTGCTCTCTTCTTGGCCTCCCGATGCTGAACTTTGATTGGTACCTGAGTACAGCGGATTTGAGAGGGTGATGAAGGTCGCATTCTTTAATGCCCAGGATTTTAATGCTGAGTTCTTGTCCTCGTCTAAGAACTCTTTATAGCTTGCATTGGGCCCTGGATTGCAGAGGAAGATTGTTGGGATGCCCCCTTTAATTTGAACTGGTTTCCCGTATTTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGCTTGAGGAAGTGCGGATCGACGTCATCAATGATGTTATACCAAGCGTCGTTACTGTACACCTTTGGACTTAGATCTAAATGCCCACATAGATAATTATGTGGGCCTAGTGACCTAGCCCATACGGTCTTTCCTGTTCTGCTTTCCCCTTCAATCACTATACTAATCGGTCTACTTGGCCGCGCAGCGGCATCGACGACGTTCTCGGCCGCCCACTCTTCAAGTTCTTCTGGAACTTGATCGAACGAAGAAGAAGAAAAAGGAGAAACATAAGGAGCTGGTGGCTCCTGAAAATACCTATCTAAATTACAATTTAAATTATGAAATTGGAGTAGAAAGTCTCTTGGGGCTTTCTCCTTCAGTATATTGAGGGCCTGAGCTTTGGACCCTGCGTTGATTGCCTCGGCATATGCGTCGTTGGCAGATTGGCAACCTCCTCTAGCTGATCTTCCATCGACCTGGAAAACTCCATGATCAAGGATGTCTCCGTCTTTCTCCATGTAGGTTTTGACATCGCTTGAGCTTTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGAGGTGAGGTCGAAGAATCTATTGTTCTTGCACTGGAACTTCCCTTCGAATTGGATGAGAACATGCAAGTGAGGAGTCCCATCTTCGTGAAGCTCTCTGCAGATTCTAATGAATTTTTTGGAAGTGGGTGTTTGGAGATTTAATAATTGGGAAAGTGCTTCCTCTTTAGTAAGAGAGCACTTGGGATAAGTGAGAAAATAATTTTTGGCATTTATTCTAAACCGATTGGGGGCTGCCATGCTGACTTAGTCAATCGGTGTCTCTCAATTTGCTCTATGTATTGGTGTACTGGAGTCCTATATATATGGAGACTCTAATGGCATAATTGTAATAAAAGAACTTTAATTTGAATTTCAAATGAAAAGCCTAAAGCGGCCATCCGTCTAATATT

Gene Information

NCBI Accession YP_009216259.1
Location 166-534
Gene Name V2
Protein Name pre-coat protein
Coding Region ATGTGGGATCCGTTATTGAACGACTTCCCTGAATCCGTTCACGGTTTCCGTTGTATGCTCGCCGTGAAATATTTGCAGGCTGTTCGAGAGTCGTACGATCCTTGCACTCTTGGGTACGATCTTCTTAGCGATCTTATCGGAGTTGTTCGCCGTACCAACTATGTCGAAGCGACCAGCAGATATCATCATTTCCACTCCCGCCTCGAAAGTGCGTCGCCGTCTGAACTTCGACAGCCCCGGGTTATCCTCTGCACGTGCCCCCACTGTCCTCGTCACAAACAAGCGTCGGGCCTGGAACAACAGGCCCCTATACAGAAAACCGAGGATTTATCGAATTTATCGCAGCCCAGATGTCCCAAAGGGATGTGA
Protein Sequence MWDPLLNDFPESVHGFRCMLAVKYLQAVRESYDPCTLGYDLLSDLIGVVRRTNYVEATSRYHHFHSRLESASPSELRQPRVILCTCPHCPRHKQASGLEQQAPIQKTEDLSNLSQPRCPKGM

NCBI Accession YP_009216260.1
Location 326-1102
Gene Name V1
Protein Name coat protein
Coding Region ATGTCGAAGCGACCAGCAGATATCATCATTTCCACTCCCGCCTCGAAAGTGCGTCGCCGTCTGAACTTCGACAGCCCCGGGTTATCCTCTGCACGTGCCCCCACTGTCCTCGTCACAAACAAGCGTCGGGCCTGGAACAACAGGCCCCTATACAGAAAACCGAGGATTTATCGAATTTATCGCAGCCCAGATGTCCCAAAGGGATGTGAAGGTCCTTGTAAGGTCCAGTCTTATGAACAGCGTGATGATGTCAAGCATACGGGCATTGTTCGATGTGTGTCGGATGTTACTAAGGGTGTTGGTCTTACTCATCGTACTGGAAAGCGTTTCACTATCAAATCTATCTATATTCTTGGTAAGGTATGGATGGATGACAACATTAAGAAGCAGAATCACACCAACAATGTAATGTTTTTCCTTGTCCGTGATAGAAGACCCTATGGCAATAGTCCCATGGATTTTGGACAGGTTTTTCACATGTTTGACAACGAACCTAGCACTGCCACTGTAAAGAATGATTTGCGAGATCGTTTTCAGGTGATGCGTAAGTTTAGTGCTACTGTAACTGGTGGCCCTTCTGGGATGAAGGAACAAGTTCCTGTTCGTAGGTTTTTTAAGCTTAATAGTCAGACTGTGTATAACCATCAAGAAGCTGCGAAGTATGAGAATCATACTGAGAATGCTTTGTTGTTGTATATGGCATGTACTCATGCCTCAAACCCTGTGTATGCTACGTTAAAGATACGGATCTATTTCTACGATTCGGTATCTAATTAA
Protein Sequence MSKRPADIIISTPASKVRRRLNFDSPGLSSARAPTVLVTNKRRAWNNRPLYRKPRIYRIYRSPDVPKGCEGPCKVQSYEQRDDVKHTGIVRCVSDVTKGVGLTHRTGKRFTIKSIYILGKVWMDDNIKKQNHTNNVMFFLVRDRRPYGNSPMDFGQVFHMFDNEPSTATVKNDLRDRFQVMRKFSATVTGGPSGMKEQVPVRRFFKLNSQTVYNHQEAAKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSVSN

NCBI Accession YP_009216261.1
Location 1099-1500
Gene Name C3
Protein Name replication enhancement protein
Coding Region ATGGATTCACGCACAGGGGAACTCATCACTGCGCATCAGACAGAGAATGGCGTACTTATCTGGACAATCAACAATCCCCTGTATTTCAAAACCATAAAGGAGATTCCTCTAACGCACGGGAATCAAACAATGGTAGAGATGCAGATAAGATTCAACTACAACCTCAGGAAGGAATTGGGGATTCACAAATGTTTCATGAACTTCAGGGTCTGGACGATCTCACGCCCTCCGACTGGTCTTTTCTTAAACGTATTTAGGAAGCAGATTATGAAATATTTGTATAGAATAGGCGTAATTTCAATTAACAATGTAATTAGGGCAGTCAATCATGTTTTGTACGATGTATTGCAAACAACCGTGGCAAGTGAATTCACGCACAATATTCAAATAAAATTATATTAA
Protein Sequence MDSRTGELITAHQTENGVLIWTINNPLYFKTIKEIPLTHGNQTMVEMQIRFNYNLRKELGIHKCFMNFRVWTISRPPTGLFLNVFRKQIMKYLYRIGVISINNVIRAVNHVLYDVLQTTVASEFTHNIQIKLY

NCBI Accession YP_009216262.1
Location 1244-1648
Gene Name C2
Protein Name transcriptional activator protein
Coding Region ATGCGACCTTCATCACCCTCTCAAATCCGCTGTACTCAGGTACCAATCAAAGTTCAGCATCGGGAGGCCAAGAAGAGAGCAATCAGGAGACGCAGGATTGACATCCCTTGTGGTTGCACAGTATACGTAGCCTTCACGTGCAGAGACAATGGATTCACGCACAGGGGAACTCATCACTGCGCATCAGACAGAGAATGGCGTACTTATCTGGACAATCAACAATCCCCTGTATTTCAAAACCATAAAGGAGATTCCTCTAACGCACGGGAATCAAACAATGGTAGAGATGCAGATAAGATTCAACTACAACCTCAGGAAGGAATTGGGGATTCACAAATGTTTCATGAACTTCAGGGTCTGGACGATCTCACGCCCTCCGACTGGTCTTTTCTTAAACGTATTTAG
Protein Sequence MRPSSPSQIRCTQVPIKVQHREAKKRAIRRRRIDIPCGCTVYVAFTCRDNGFTHRGTHHCASDREWRTYLDNQQSPVFQNHKGDSSNARESNNGRDADKIQLQPQEGIGDSQMFHELQGLDDLTPSDWSFLKRI

NCBI Accession YP_009216263.1
Location 1548-2636
Gene Name C1
Protein Name replication initiation protein
Coding Region ATGGCAGCCCCCAATCGGTTTAGAATAAATGCCAAAAATTATTTTCTCACTTATCCCAAGTGCTCTCTTACTAAAGAGGAAGCACTTTCCCAATTATTAAATCTCCAAACACCCACTTCCAAAAAATTCATTAGAATCTGCAGAGAGCTTCACGAAGATGGGACTCCTCACTTGCATGTTCTCATCCAATTCGAAGGGAAGTTCCAGTGCAAGAACAATAGATTCTTCGACCTCACCTCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAAAGCTCAAGCGATGTCAAAACCTACATGGAGAAAGACGGAGACATCCTTGATCATGGAGTTTTCCAGGTCGATGGAAGATCAGCTAGAGGAGGTTGCCAATCTGCCAACGACGCATATGCCGAGGCAATCAACGCAGGGTCCAAAGCTCAGGCCCTCAATATACTGAAGGAGAAAGCCCCAAGAGACTTTCTACTCCAATTTCATAATTTAAATTGTAATTTAGATAGGTATTTTCAGGAGCCACCAGCTCCTTATGTTTCTCCTTTTTCTTCTTCTTCGTTCGATCAAGTTCCAGAAGAACTTGAAGAGTGGGCGGCCGAGAACGTCGTCGATGCCGCTGCGCGGCCAAGTAGACCGATTAGTATAGTGATTGAAGGGGAAAGCAGAACAGGAAAGACCGTATGGGCTAGGTCACTAGGCCCACATAATTATCTATGTGGGCATTTAGATCTAAGTCCAAAGGTGTACAGTAACGACGCTTGGTATAACATCATTGATGACGTCGATCCGCACTTCCTCAAGCACTTTAAAGAGTTCATGGGGGCCCAAAGGGACTGGCAATCCAACACAAAATACGGGAAACCAGTTCAAATTAAAGGGGGCATCCCAACAATCTTCCTCTGCAATCCAGGGCCCAATGCAAGCTATAAAGAGTTCTTAGACGAGGACAAGAACTCAGCATTAAAATCCTGGGCATTAAAGAATGCGACCTTCATCACCCTCTCAAATCCGCTGTACTCAGGTACCAATCAAAGTTCAGCATCGGGAGGCCAAGAAGAGAGCAATCAGGAGACGCAGGATTGA
Protein Sequence MAAPNRFRINAKNYFLTYPKCSLTKEEALSQLLNLQTPTSKKFIRICRELHEDGTPHLHVLIQFEGKFQCKNNRFFDLTSPTRSAHFHPNIQGAKSSSDVKTYMEKDGDILDHGVFQVDGRSARGGCQSANDAYAEAINAGSKAQALNILKEKAPRDFLLQFHNLNCNLDRYFQEPPAPYVSPFSSSSFDQVPEELEEWAAENVVDAAARPSRPISIVIEGESRTGKTVWARSLGPHNYLCGHLDLSPKVYSNDAWYNIIDDVDPHFLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPTIFLCNPGPNASYKEFLDEDKNSALKSWALKNATFITLSNPLYSGTNQSSASGGQEESNQETQD

NCBI Accession YP_009216264.1
Location 2186-2479
Gene Name C4
Protein Name C4 protein
Coding Region ATGGGACTCCTCACTTGCATGTTCTCATCCAATTCGAAGGGAAGTTCCAGTGCAAGAACAATAGATTCTTCGACCTCACCTCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAAAGCTCAAGCGATGTCAAAACCTACATGGAGAAAGACGGAGACATCCTTGATCATGGAGTTTTCCAGGTCGATGGAAGATCAGCTAGAGGAGGTTGCCAATCTGCCAACGACGCATATGCCGAGGCAATCAACGCAGGGTCCAAAGCTCAGGCCCTCAATATACTGA
Protein Sequence MGLLTCMFSSNSKGSSSARTIDSSTSPPQPGQHISIRTFRELKAQAMSKPTWRKTETSLIMEFSRSMEDQLEEVANLPTTHMPRQSTQGPKLRPSIY