Ocimum yellow vein virus
Basic Information
Genomic Organization
JBrowse
Genome
ACCGGATGGCCGCCCGCCCCGCCCGCATCGACGCCCCCTTCTCGCGCGTGTCTCCCACATCGAACACGTGGCGCTCTATATGCGTGTTTTACGTTGTTTGTTATTGTATATGTATTTTATTAGTGAAGTACGATGTCTTCGTATTTAGGAACGATGTGGGACCCCTTGGAGAATGAGTTCCCGGAGACCGTCCATGGTTTTCGGTGTATGCTAGCCGTGAAATATCTTCTGTTGGTGGAGTCTACGTATGAACCTGATACCCTAGGTCGTGAGCTCATACGCGATCTCATACGTTGTTTGCGTGCTTCGTCTTATAATGAAGCGTCCTGGAGATATAGTAATTTCCACACCCGTTTCCAAGGTTCGTCGTCGTCTGAATTTCGACAGCCCGTATTCCGCCCGTGTACCTGCCAACACTGTCCGTATTTCCAGAAAACGAATATGGGCCTCTCGTCCTATGTACAGAAAGCCCAAGATATACCGGATGTACAGAAGCCCGGATGTTCCAAAGGGTTGTGAAGGTCCGTGTAAGGTCCAGTCGTATGAGGCCCGTCATGATGTCAAGCATACTGGAACTGTTTTGTGTTGTTCTGATGTTACACGTGGTACTGGTTTGACTCACCGTGTTGGTAAGAGATTTACTATTAAGTCAATTTACATTCTGGGCAAGATTTGGATGGATGAGAATATTAAGAAGAAGAATCATACGAACATCGTCATGTTCTATCTTGTTCGTGATCGACGACCGTCTGACAAACCTTATGAATTTGGTTCTGTATTTAATATGTTTGATAATGAGCCTGCTACGGCGACAGTTAAGATGGATCATAGGGATAGGTTTCAGGTACTTCATAAATTTTATGCTTGGGTTACTGGTGGTGAATATGGTTCTAAAGAGCAGGCTATGGTACGGAGGTTTCGGAAGATATATCATCCTGTGGTGTACAACAATCAAGAGGCTGCTGAATATAAGAATCATCAGGAGAATGCGTTATTATTGTATATGGCTTGTACTCATGCTTCAAATCCTGTATATGCGACTCTTAAATGTCGTATTTATTTCTATGACAGTGTATCGAATTAATAAAATTTGAATTTTATATCATGATCTTCTTGCACTTCAATTGTGCCTTCCAATACATTATACAGTACATGTTCTGCAGCTCTAATACAAATATTTAAGCTAATAGCACCCAACTGGTTTACATATTTAATAAACTGATATTTAAATACTCTTAAGAAATGCGATGTCTGAGGTTGTAAACGAGTGAAGATCTTGAAGTTCAGAAAACACTTCAGAATCCCCAACGCCTTCTTGAGGTTGTGGTTGAATCTGACTTGGACCACTACTATGTCGTGTCCCGTCCGGAATGGTCTGCTGTGGTGGTATAAAATTTTGAAATATAGGGGATTCGGTACGTCGGAGATATAGACGCCATTCATTGACTGAGCTGCAGTGATATTCTCCCCTGTGCGAGAATCCATGATTATGGCAGTCAATGCTCAGATAGTAGCTGCAACCGCACCGGAGATCTATTCTCTTCCTCCTGATTGTCGTTCGCTTCGTCTGCTTGGCTATCTTGTGTTGTACCTTGATTGGAACTTGTGGTGGTGGAATATAAGGGACTCTCGAGGGTGAAGAACTTGGCATTCTTTTCAGCCCAGGCCTTTAGCTGTGCATTCTTCTCCTCATTCAAATATGATTTATAAGAAGAATTATGACCTGGATTGCAGAGGAAGATAGTGGGAATGCCACCTTTAATTTGAATTGGTTTCCCGTATTTTGTGTTGCTTTGCCAATCCCTTTGGGCGCCCATCAACTCTTTAAAGTGCTTTAGGTAGTGGGGGTCAACATCATCAATAATGTTGTACCATGCTGAATTTGAAAATACCTTTGGGGATAAGTCGAGGTGTCCACACAGGTAATTATGTGGACCCAGACTCCGCGCCCAAATAGTCTTGCCGGTACGACTATCTCCCTCTATGACTGCTGATATTGGTCTCCATGGCCGCGCAGCGGAATCCTTGATATTTTCGTGAACCCATTGTGTTATCTCTTCAGGCACGTTGCTGTAAGTTGCATTAGCATATGGACTCACGTAAGGAGGAGGTGGAACTTGGAATATCCTCTCGAGATTTGCTTTCAGATTATGATATTGGAATATGTAATCCTTCGGCAGTTTTTCTCTGATTATTGCGAGTGCCGCATCTGCTGTATTTGCATTTAATGCATCTGCACATGCATCGTTTGCATTTTGGCAACCGCCTCTGGCACTTCGTCCATCTACCTGGAATTCTCCCCATTTGAGTGTATCGCCGTCCTTCTCGATGTATGATTTAACGTCCGAGCTTGATTTAACTCCCTGAATGTTCGGATGGTAATGTGATCCCCTGCCTGTGGCCTTAAGATCGAAGAATCTGTTATTCGTGCATGTGAGTTTGCCTTCGAATTGAATGAGAATATGGAGGTGAGGTTGCCCATCTTCGTGAAGCTCTCTGGCAATTTCAATGAATTTTTTATTCGTCTGTGTTTCAATTGCACGAATTTGGGCGAGAGCTTCTTCTTTAGAGAGGGGACATTTTGGATATGTGAGGAAATAATTTTTGGCTTGAATTTTGAAGCGACGTGGAGGAGCCATTTATAGAGAGAGAATGTCTCCAATTGCTTTTCAGCTGAAGTCTCCATTGTATTGGAGACAATATATAGTGTCTCCAAATGGCATTATGGTAATTTTAAAAAGTAATAGGCTCCTTTCAAATCTAGTCGTACACGTGGGCTCATATGCGGCCATCCGTTTAATATT
Gene Information
NCBI Accession
|
YP_010087824.1
|
Location
|
133-519 |
Gene Name
|
AV2 |
Protein Name
|
precoat protein |
Coding Region
|
ATGTCTTCGTATTTAGGAACGATGTGGGACCCCTTGGAGAATGAGTTCCCGGAGACCGTCCATGGTTTTCGGTGTATGCTAGCCGTGAAATATCTTCTGTTGGTGGAGTCTACGTATGAACCTGATACCCTAGGTCGTGAGCTCATACGCGATCTCATACGTTGTTTGCGTGCTTCGTCTTATAATGAAGCGTCCTGGAGATATAGTAATTTCCACACCCGTTTCCAAGGTTCGTCGTCGTCTGAATTTCGACAGCCCGTATTCCGCCCGTGTACCTGCCAACACTGTCCGTATTTCCAGAAAACGAATATGGGCCTCTCGTCCTATGTACAGAAAGCCCAAGATATACCGGATGTACAGAAGCCCGGATGTTCCAAAGGGTTGTGA |
Protein Sequence
|
MSSYLGTMWDPLENEFPETVHGFRCMLAVKYLLLVESTYEPDTLGRELIRDLIRCLRASSYNEASWRYSNFHTRFQGSSSSEFRQPVFRPCTCQHCPYFQKTNMGLSSYVQKAQDIPDVQKPGCSKGL |
NCBI Accession
|
YP_010087825.1
|
Location
|
317-1084 |
Gene Name
|
AV1 |
Protein Name
|
coat protein |
Coding Region
|
ATGAAGCGTCCTGGAGATATAGTAATTTCCACACCCGTTTCCAAGGTTCGTCGTCGTCTGAATTTCGACAGCCCGTATTCCGCCCGTGTACCTGCCAACACTGTCCGTATTTCCAGAAAACGAATATGGGCCTCTCGTCCTATGTACAGAAAGCCCAAGATATACCGGATGTACAGAAGCCCGGATGTTCCAAAGGGTTGTGAAGGTCCGTGTAAGGTCCAGTCGTATGAGGCCCGTCATGATGTCAAGCATACTGGAACTGTTTTGTGTTGTTCTGATGTTACACGTGGTACTGGTTTGACTCACCGTGTTGGTAAGAGATTTACTATTAAGTCAATTTACATTCTGGGCAAGATTTGGATGGATGAGAATATTAAGAAGAAGAATCATACGAACATCGTCATGTTCTATCTTGTTCGTGATCGACGACCGTCTGACAAACCTTATGAATTTGGTTCTGTATTTAATATGTTTGATAATGAGCCTGCTACGGCGACAGTTAAGATGGATCATAGGGATAGGTTTCAGGTACTTCATAAATTTTATGCTTGGGTTACTGGTGGTGAATATGGTTCTAAAGAGCAGGCTATGGTACGGAGGTTTCGGAAGATATATCATCCTGTGGTGTACAACAATCAAGAGGCTGCTGAATATAAGAATCATCAGGAGAATGCGTTATTATTGTATATGGCTTGTACTCATGCTTCAAATCCTGTATATGCGACTCTTAAATGTCGTATTTATTTCTATGACAGTGTATCGAATTAA |
Protein Sequence
|
MKRPGDIVISTPVSKVRRRLNFDSPYSARVPANTVRISRKRIWASRPMYRKPKIYRMYRSPDVPKGCEGPCKVQSYEARHDVKHTGTVLCCSDVTRGTGLTHRVGKRFTIKSIYILGKIWMDENIKKKNHTNIVMFYLVRDRRPSDKPYEFGSVFNMFDNEPATATVKMDHRDRFQVLHKFYAWVTGGEYGSKEQAMVRRFRKIYHPVVYNNQEAAEYKNHQENALLLYMACTHASNPVYATLKCRIYFYDSVSN |
NCBI Accession
|
YP_010087826.1
|
Location
|
1081-1485 |
Gene Name
|
AC3 |
Protein Name
|
replication enhancer protein |
Coding Region
|
ATGGATTCTCGCACAGGGGAGAATATCACTGCAGCTCAGTCAATGAATGGCGTCTATATCTCCGACGTACCGAATCCCCTATATTTCAAAATTTTATACCACCACAGCAGACCATTCCGGACGGGACACGACATAGTAGTGGTCCAAGTCAGATTCAACCACAACCTCAAGAAGGCGTTGGGGATTCTGAAGTGTTTTCTGAACTTCAAGATCTTCACTCGTTTACAACCTCAGACATCGCATTTCTTAAGAGTATTTAAATATCAGTTTATTAAATATGTAAACCAGTTGGGTGCTATTAGCTTAAATATTTGTATTAGAGCTGCAGAACATGTACTGTATAATGTATTGGAAGGCACAATTGAAGTGCAAGAAGATCATGATATAAAATTCAAATTTTATTAA |
Protein Sequence
|
MDSRTGENITAAQSMNGVYISDVPNPLYFKILYHHSRPFRTGHDIVVVQVRFNHNLKKALGILKCFLNFKIFTRLQPQTSHFLRVFKYQFIKYVNQLGAISLNICIRAAEHVLYNVLEGTIEVQEDHDIKFKFY |
NCBI Accession
|
YP_010087827.1
|
Location
|
1226-1651 |
Gene Name
|
AC2 |
Protein Name
|
transactivator protein |
Coding Region
|
ATGCCAAGTTCTTCACCCTCGAGAGTCCCTTATATTCCACCACCACAAGTTCCAATCAAGGTACAACACAAGATAGCCAAGCAGACGAAGCGAACGACAATCAGGAGGAAGAGAATAGATCTCCGGTGCGGTTGCAGCTACTATCTGAGCATTGACTGCCATAATCATGGATTCTCGCACAGGGGAGAATATCACTGCAGCTCAGTCAATGAATGGCGTCTATATCTCCGACGTACCGAATCCCCTATATTTCAAAATTTTATACCACCACAGCAGACCATTCCGGACGGGACACGACATAGTAGTGGTCCAAGTCAGATTCAACCACAACCTCAAGAAGGCGTTGGGGATTCTGAAGTGTTTTCTGAACTTCAAGATCTTCACTCGTTTACAACCTCAGACATCGCATTTCTTAAGAGTATTTAA |
Protein Sequence
|
MPSSSPSRVPYIPPPQVPIKVQHKIAKQTKRTTIRRKRIDLRCGCSYYLSIDCHNHGFSHRGEYHCSSVNEWRLYLRRTESPIFQNFIPPQQTIPDGTRHSSGPSQIQPQPQEGVGDSEVFSELQDLHSFTTSDIAFLKSI |
NCBI Accession
|
YP_010087828.1
|
Location
|
1497-2639 |
Gene Name
|
AC1 |
Protein Name
|
replication associated protein |
Coding Region
|
ATGGCTCCTCCACGTCGCTTCAAAATTCAAGCCAAAAATTATTTCCTCACATATCCAAAATGTCCCCTCTCTAAAGAAGAAGCTCTCGCCCAAATTCGTGCAATTGAAACACAGACGAATAAAAAATTCATTGAAATTGCCAGAGAGCTTCACGAAGATGGGCAACCTCACCTCCATATTCTCATTCAATTCGAAGGCAAACTCACATGCACGAATAACAGATTCTTCGATCTTAAGGCCACAGGCAGGGGATCACATTACCATCCGAACATTCAGGGAGTTAAATCAAGCTCGGACGTTAAATCATACATCGAGAAGGACGGCGATACACTCAAATGGGGAGAATTCCAGGTAGATGGACGAAGTGCCAGAGGCGGTTGCCAAAATGCAAACGATGCATGTGCAGATGCATTAAATGCAAATACAGCAGATGCGGCACTCGCAATAATCAGAGAAAAACTGCCGAAGGATTACATATTCCAATATCATAATCTGAAAGCAAATCTCGAGAGGATATTCCAAGTTCCACCTCCTCCTTACGTGAGTCCATATGCTAATGCAACTTACAGCAACGTGCCTGAAGAGATAACACAATGGGTTCACGAAAATATCAAGGATTCCGCTGCGCGGCCATGGAGACCAATATCAGCAGTCATAGAGGGAGATAGTCGTACCGGCAAGACTATTTGGGCGCGGAGTCTGGGTCCACATAATTACCTGTGTGGACACCTCGACTTATCCCCAAAGGTATTTTCAAATTCAGCATGGTACAACATTATTGATGATGTTGACCCCCACTACCTAAAGCACTTTAAAGAGTTGATGGGCGCCCAAAGGGATTGGCAAAGCAACACAAAATACGGGAAACCAATTCAAATTAAAGGTGGCATTCCCACTATCTTCCTCTGCAATCCAGGTCATAATTCTTCTTATAAATCATATTTGAATGAGGAGAAGAATGCACAGCTAAAGGCCTGGGCTGAAAAGAATGCCAAGTTCTTCACCCTCGAGAGTCCCTTATATTCCACCACCACAAGTTCCAATCAAGGTACAACACAAGATAGCCAAGCAGACGAAGCGAACGACAATCAGGAGGAAGAGAATAGATCTCCGGTGCGGTTGCAGCTACTATCTGAGCATTGA |
Protein Sequence
|
MAPPRRFKIQAKNYFLTYPKCPLSKEEALAQIRAIETQTNKKFIEIARELHEDGQPHLHILIQFEGKLTCTNNRFFDLKATGRGSHYHPNIQGVKSSSDVKSYIEKDGDTLKWGEFQVDGRSARGGCQNANDACADALNANTADAALAIIREKLPKDYIFQYHNLKANLERIFQVPPPPYVSPYANATYSNVPEEITQWVHENIKDSAARPWRPISAVIEGDSRTGKTIWARSLGPHNYLCGHLDLSPKVFSNSAWYNIIDDVDPHYLKHFKELMGAQRDWQSNTKYGKPIQIKGGIPTIFLCNPGHNSSYKSYLNEEKNAQLKAWAEKNAKFFTLESPLYSTTTSSNQGTTQDSQADEANDNQEEENRSPVRLQLLSEH |
NCBI Accession
|
YP_010087829.1
|
Location
|
2285-2482 |
Gene Name
|
AC4 |
Protein Name
|
AC4 protein |
Coding Region
|
ATGGGCAACCTCACCTCCATATTCTCATTCAATTCGAAGGCAAACTCACATGCACGAATAACAGATTCTTCGATCTTAAGGCCACAGGCAGGGGATCACATTACCATCCGAACATTCAGGGAGTTAAATCAAGCTCGGACGTTAAATCATACATCGAGAAGGACGGCGATACACTCAAATGGGGAGAATTCCAGGTAG |
Protein Sequence
|
MGNLTSIFSFNSKANSHARITDSSILRPQAGDHITIRTFRELNQARTLNHTSRRTAIHSNGENSR |