Ocimum yellow vein virus


Basic Information

Genus Begomovirus
NCBI Assembly GCF_018589035.1
Isolate Uganda
Release date 2021/6/1
Host
Vector
Download Genome |GFF3 |PEP |CDS

Genomic Organization


JBrowse


Genome

NC_055592
ACCGGATGGCCGCCCGCCCCGCCCGCATCGACGCCCCCTTCTCGCGCGTGTCTCCCACATCGAACACGTGGCGCTCTATATGCGTGTTTTACGTTGTTTGTTATTGTATATGTATTTTATTAGTGAAGTACGATGTCTTCGTATTTAGGAACGATGTGGGACCCCTTGGAGAATGAGTTCCCGGAGACCGTCCATGGTTTTCGGTGTATGCTAGCCGTGAAATATCTTCTGTTGGTGGAGTCTACGTATGAACCTGATACCCTAGGTCGTGAGCTCATACGCGATCTCATACGTTGTTTGCGTGCTTCGTCTTATAATGAAGCGTCCTGGAGATATAGTAATTTCCACACCCGTTTCCAAGGTTCGTCGTCGTCTGAATTTCGACAGCCCGTATTCCGCCCGTGTACCTGCCAACACTGTCCGTATTTCCAGAAAACGAATATGGGCCTCTCGTCCTATGTACAGAAAGCCCAAGATATACCGGATGTACAGAAGCCCGGATGTTCCAAAGGGTTGTGAAGGTCCGTGTAAGGTCCAGTCGTATGAGGCCCGTCATGATGTCAAGCATACTGGAACTGTTTTGTGTTGTTCTGATGTTACACGTGGTACTGGTTTGACTCACCGTGTTGGTAAGAGATTTACTATTAAGTCAATTTACATTCTGGGCAAGATTTGGATGGATGAGAATATTAAGAAGAAGAATCATACGAACATCGTCATGTTCTATCTTGTTCGTGATCGACGACCGTCTGACAAACCTTATGAATTTGGTTCTGTATTTAATATGTTTGATAATGAGCCTGCTACGGCGACAGTTAAGATGGATCATAGGGATAGGTTTCAGGTACTTCATAAATTTTATGCTTGGGTTACTGGTGGTGAATATGGTTCTAAAGAGCAGGCTATGGTACGGAGGTTTCGGAAGATATATCATCCTGTGGTGTACAACAATCAAGAGGCTGCTGAATATAAGAATCATCAGGAGAATGCGTTATTATTGTATATGGCTTGTACTCATGCTTCAAATCCTGTATATGCGACTCTTAAATGTCGTATTTATTTCTATGACAGTGTATCGAATTAATAAAATTTGAATTTTATATCATGATCTTCTTGCACTTCAATTGTGCCTTCCAATACATTATACAGTACATGTTCTGCAGCTCTAATACAAATATTTAAGCTAATAGCACCCAACTGGTTTACATATTTAATAAACTGATATTTAAATACTCTTAAGAAATGCGATGTCTGAGGTTGTAAACGAGTGAAGATCTTGAAGTTCAGAAAACACTTCAGAATCCCCAACGCCTTCTTGAGGTTGTGGTTGAATCTGACTTGGACCACTACTATGTCGTGTCCCGTCCGGAATGGTCTGCTGTGGTGGTATAAAATTTTGAAATATAGGGGATTCGGTACGTCGGAGATATAGACGCCATTCATTGACTGAGCTGCAGTGATATTCTCCCCTGTGCGAGAATCCATGATTATGGCAGTCAATGCTCAGATAGTAGCTGCAACCGCACCGGAGATCTATTCTCTTCCTCCTGATTGTCGTTCGCTTCGTCTGCTTGGCTATCTTGTGTTGTACCTTGATTGGAACTTGTGGTGGTGGAATATAAGGGACTCTCGAGGGTGAAGAACTTGGCATTCTTTTCAGCCCAGGCCTTTAGCTGTGCATTCTTCTCCTCATTCAAATATGATTTATAAGAAGAATTATGACCTGGATTGCAGAGGAAGATAGTGGGAATGCCACCTTTAATTTGAATTGGTTTCCCGTATTTTGTGTTGCTTTGCCAATCCCTTTGGGCGCCCATCAACTCTTTAAAGTGCTTTAGGTAGTGGGGGTCAACATCATCAATAATGTTGTACCATGCTGAATTTGAAAATACCTTTGGGGATAAGTCGAGGTGTCCACACAGGTAATTATGTGGACCCAGACTCCGCGCCCAAATAGTCTTGCCGGTACGACTATCTCCCTCTATGACTGCTGATATTGGTCTCCATGGCCGCGCAGCGGAATCCTTGATATTTTCGTGAACCCATTGTGTTATCTCTTCAGGCACGTTGCTGTAAGTTGCATTAGCATATGGACTCACGTAAGGAGGAGGTGGAACTTGGAATATCCTCTCGAGATTTGCTTTCAGATTATGATATTGGAATATGTAATCCTTCGGCAGTTTTTCTCTGATTATTGCGAGTGCCGCATCTGCTGTATTTGCATTTAATGCATCTGCACATGCATCGTTTGCATTTTGGCAACCGCCTCTGGCACTTCGTCCATCTACCTGGAATTCTCCCCATTTGAGTGTATCGCCGTCCTTCTCGATGTATGATTTAACGTCCGAGCTTGATTTAACTCCCTGAATGTTCGGATGGTAATGTGATCCCCTGCCTGTGGCCTTAAGATCGAAGAATCTGTTATTCGTGCATGTGAGTTTGCCTTCGAATTGAATGAGAATATGGAGGTGAGGTTGCCCATCTTCGTGAAGCTCTCTGGCAATTTCAATGAATTTTTTATTCGTCTGTGTTTCAATTGCACGAATTTGGGCGAGAGCTTCTTCTTTAGAGAGGGGACATTTTGGATATGTGAGGAAATAATTTTTGGCTTGAATTTTGAAGCGACGTGGAGGAGCCATTTATAGAGAGAGAATGTCTCCAATTGCTTTTCAGCTGAAGTCTCCATTGTATTGGAGACAATATATAGTGTCTCCAAATGGCATTATGGTAATTTTAAAAAGTAATAGGCTCCTTTCAAATCTAGTCGTACACGTGGGCTCATATGCGGCCATCCGTTTAATATT

Gene Information

NCBI Accession YP_010087824.1
Location 133-519
Gene Name AV2
Protein Name precoat protein
Coding Region ATGTCTTCGTATTTAGGAACGATGTGGGACCCCTTGGAGAATGAGTTCCCGGAGACCGTCCATGGTTTTCGGTGTATGCTAGCCGTGAAATATCTTCTGTTGGTGGAGTCTACGTATGAACCTGATACCCTAGGTCGTGAGCTCATACGCGATCTCATACGTTGTTTGCGTGCTTCGTCTTATAATGAAGCGTCCTGGAGATATAGTAATTTCCACACCCGTTTCCAAGGTTCGTCGTCGTCTGAATTTCGACAGCCCGTATTCCGCCCGTGTACCTGCCAACACTGTCCGTATTTCCAGAAAACGAATATGGGCCTCTCGTCCTATGTACAGAAAGCCCAAGATATACCGGATGTACAGAAGCCCGGATGTTCCAAAGGGTTGTGA
Protein Sequence MSSYLGTMWDPLENEFPETVHGFRCMLAVKYLLLVESTYEPDTLGRELIRDLIRCLRASSYNEASWRYSNFHTRFQGSSSSEFRQPVFRPCTCQHCPYFQKTNMGLSSYVQKAQDIPDVQKPGCSKGL

NCBI Accession YP_010087825.1
Location 317-1084
Gene Name AV1
Protein Name coat protein
Coding Region ATGAAGCGTCCTGGAGATATAGTAATTTCCACACCCGTTTCCAAGGTTCGTCGTCGTCTGAATTTCGACAGCCCGTATTCCGCCCGTGTACCTGCCAACACTGTCCGTATTTCCAGAAAACGAATATGGGCCTCTCGTCCTATGTACAGAAAGCCCAAGATATACCGGATGTACAGAAGCCCGGATGTTCCAAAGGGTTGTGAAGGTCCGTGTAAGGTCCAGTCGTATGAGGCCCGTCATGATGTCAAGCATACTGGAACTGTTTTGTGTTGTTCTGATGTTACACGTGGTACTGGTTTGACTCACCGTGTTGGTAAGAGATTTACTATTAAGTCAATTTACATTCTGGGCAAGATTTGGATGGATGAGAATATTAAGAAGAAGAATCATACGAACATCGTCATGTTCTATCTTGTTCGTGATCGACGACCGTCTGACAAACCTTATGAATTTGGTTCTGTATTTAATATGTTTGATAATGAGCCTGCTACGGCGACAGTTAAGATGGATCATAGGGATAGGTTTCAGGTACTTCATAAATTTTATGCTTGGGTTACTGGTGGTGAATATGGTTCTAAAGAGCAGGCTATGGTACGGAGGTTTCGGAAGATATATCATCCTGTGGTGTACAACAATCAAGAGGCTGCTGAATATAAGAATCATCAGGAGAATGCGTTATTATTGTATATGGCTTGTACTCATGCTTCAAATCCTGTATATGCGACTCTTAAATGTCGTATTTATTTCTATGACAGTGTATCGAATTAA
Protein Sequence MKRPGDIVISTPVSKVRRRLNFDSPYSARVPANTVRISRKRIWASRPMYRKPKIYRMYRSPDVPKGCEGPCKVQSYEARHDVKHTGTVLCCSDVTRGTGLTHRVGKRFTIKSIYILGKIWMDENIKKKNHTNIVMFYLVRDRRPSDKPYEFGSVFNMFDNEPATATVKMDHRDRFQVLHKFYAWVTGGEYGSKEQAMVRRFRKIYHPVVYNNQEAAEYKNHQENALLLYMACTHASNPVYATLKCRIYFYDSVSN

NCBI Accession YP_010087826.1
Location 1081-1485
Gene Name AC3
Protein Name replication enhancer protein
Coding Region ATGGATTCTCGCACAGGGGAGAATATCACTGCAGCTCAGTCAATGAATGGCGTCTATATCTCCGACGTACCGAATCCCCTATATTTCAAAATTTTATACCACCACAGCAGACCATTCCGGACGGGACACGACATAGTAGTGGTCCAAGTCAGATTCAACCACAACCTCAAGAAGGCGTTGGGGATTCTGAAGTGTTTTCTGAACTTCAAGATCTTCACTCGTTTACAACCTCAGACATCGCATTTCTTAAGAGTATTTAAATATCAGTTTATTAAATATGTAAACCAGTTGGGTGCTATTAGCTTAAATATTTGTATTAGAGCTGCAGAACATGTACTGTATAATGTATTGGAAGGCACAATTGAAGTGCAAGAAGATCATGATATAAAATTCAAATTTTATTAA
Protein Sequence MDSRTGENITAAQSMNGVYISDVPNPLYFKILYHHSRPFRTGHDIVVVQVRFNHNLKKALGILKCFLNFKIFTRLQPQTSHFLRVFKYQFIKYVNQLGAISLNICIRAAEHVLYNVLEGTIEVQEDHDIKFKFY

NCBI Accession YP_010087827.1
Location 1226-1651
Gene Name AC2
Protein Name transactivator protein
Coding Region ATGCCAAGTTCTTCACCCTCGAGAGTCCCTTATATTCCACCACCACAAGTTCCAATCAAGGTACAACACAAGATAGCCAAGCAGACGAAGCGAACGACAATCAGGAGGAAGAGAATAGATCTCCGGTGCGGTTGCAGCTACTATCTGAGCATTGACTGCCATAATCATGGATTCTCGCACAGGGGAGAATATCACTGCAGCTCAGTCAATGAATGGCGTCTATATCTCCGACGTACCGAATCCCCTATATTTCAAAATTTTATACCACCACAGCAGACCATTCCGGACGGGACACGACATAGTAGTGGTCCAAGTCAGATTCAACCACAACCTCAAGAAGGCGTTGGGGATTCTGAAGTGTTTTCTGAACTTCAAGATCTTCACTCGTTTACAACCTCAGACATCGCATTTCTTAAGAGTATTTAA
Protein Sequence MPSSSPSRVPYIPPPQVPIKVQHKIAKQTKRTTIRRKRIDLRCGCSYYLSIDCHNHGFSHRGEYHCSSVNEWRLYLRRTESPIFQNFIPPQQTIPDGTRHSSGPSQIQPQPQEGVGDSEVFSELQDLHSFTTSDIAFLKSI

NCBI Accession YP_010087828.1
Location 1497-2639
Gene Name AC1
Protein Name replication associated protein
Coding Region ATGGCTCCTCCACGTCGCTTCAAAATTCAAGCCAAAAATTATTTCCTCACATATCCAAAATGTCCCCTCTCTAAAGAAGAAGCTCTCGCCCAAATTCGTGCAATTGAAACACAGACGAATAAAAAATTCATTGAAATTGCCAGAGAGCTTCACGAAGATGGGCAACCTCACCTCCATATTCTCATTCAATTCGAAGGCAAACTCACATGCACGAATAACAGATTCTTCGATCTTAAGGCCACAGGCAGGGGATCACATTACCATCCGAACATTCAGGGAGTTAAATCAAGCTCGGACGTTAAATCATACATCGAGAAGGACGGCGATACACTCAAATGGGGAGAATTCCAGGTAGATGGACGAAGTGCCAGAGGCGGTTGCCAAAATGCAAACGATGCATGTGCAGATGCATTAAATGCAAATACAGCAGATGCGGCACTCGCAATAATCAGAGAAAAACTGCCGAAGGATTACATATTCCAATATCATAATCTGAAAGCAAATCTCGAGAGGATATTCCAAGTTCCACCTCCTCCTTACGTGAGTCCATATGCTAATGCAACTTACAGCAACGTGCCTGAAGAGATAACACAATGGGTTCACGAAAATATCAAGGATTCCGCTGCGCGGCCATGGAGACCAATATCAGCAGTCATAGAGGGAGATAGTCGTACCGGCAAGACTATTTGGGCGCGGAGTCTGGGTCCACATAATTACCTGTGTGGACACCTCGACTTATCCCCAAAGGTATTTTCAAATTCAGCATGGTACAACATTATTGATGATGTTGACCCCCACTACCTAAAGCACTTTAAAGAGTTGATGGGCGCCCAAAGGGATTGGCAAAGCAACACAAAATACGGGAAACCAATTCAAATTAAAGGTGGCATTCCCACTATCTTCCTCTGCAATCCAGGTCATAATTCTTCTTATAAATCATATTTGAATGAGGAGAAGAATGCACAGCTAAAGGCCTGGGCTGAAAAGAATGCCAAGTTCTTCACCCTCGAGAGTCCCTTATATTCCACCACCACAAGTTCCAATCAAGGTACAACACAAGATAGCCAAGCAGACGAAGCGAACGACAATCAGGAGGAAGAGAATAGATCTCCGGTGCGGTTGCAGCTACTATCTGAGCATTGA
Protein Sequence MAPPRRFKIQAKNYFLTYPKCPLSKEEALAQIRAIETQTNKKFIEIARELHEDGQPHLHILIQFEGKLTCTNNRFFDLKATGRGSHYHPNIQGVKSSSDVKSYIEKDGDTLKWGEFQVDGRSARGGCQNANDACADALNANTADAALAIIREKLPKDYIFQYHNLKANLERIFQVPPPPYVSPYANATYSNVPEEITQWVHENIKDSAARPWRPISAVIEGDSRTGKTIWARSLGPHNYLCGHLDLSPKVFSNSAWYNIIDDVDPHYLKHFKELMGAQRDWQSNTKYGKPIQIKGGIPTIFLCNPGHNSSYKSYLNEEKNAQLKAWAEKNAKFFTLESPLYSTTTSSNQGTTQDSQADEANDNQEEENRSPVRLQLLSEH

NCBI Accession YP_010087829.1
Location 2285-2482
Gene Name AC4
Protein Name AC4 protein
Coding Region ATGGGCAACCTCACCTCCATATTCTCATTCAATTCGAAGGCAAACTCACATGCACGAATAACAGATTCTTCGATCTTAAGGCCACAGGCAGGGGATCACATTACCATCCGAACATTCAGGGAGTTAAATCAAGCTCGGACGTTAAATCATACATCGAGAAGGACGGCGATACACTCAAATGGGGAGAATTCCAGGTAG
Protein Sequence MGNLTSIFSFNSKANSHARITDSSILRPQAGDHITIRTFRELNQARTLNHTSRRTAIHSNGENSR