Malvastrum yellow vein Cambodia virus
Basic Information
Genus |
Begomovirus
|
NCBI Assembly |
GCF_000969115.1 |
Isolate |
Cambodia |
Release date |
2015/4/6 |
Submitter |
Tang,Y.F., He,Z.F. |
Host |
|
Vector |
|
Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCGGATGGCCGCGCGATTTTTTATTGTGGGTCCCCGCACTATTTTTTGTCTTCCAATAAAAACGCTCCCTCAAAGCTAGTTTAAAAAAAACCCGCTATAAATACTTGGTGGATAAGTAATAAGGATTTAAAATGTGGGATCCACTGTTGAACGAGTTTCCTGAAACTGTTCATGGTCTCCGGTGTATGCTTGCCGTAAAATATTGTCAGTTAATCGAACAGACATATTCTCCGGACACAGTGGGTTACGATCTTATACGAGATTTAATTTCAGTAATTCGTGCTCGCAATTATGTCGAAGCGACCCGCCGATATAGTCATTTCCACTCCCGCCTCGAAGGTACGACGCCGTCTGAACTTCGACACCCCCGTGATGAGCCGTGCTGCTGCCCCCACTGTCCTCGTCACCAACAGAAAAAGGACATGGATCAACAGGCCCATGTATCGCAAGCCCAGACTCTTCAGAATGTACAGAAGCCCTGATGTCCCTAAAGGTTGTGAAGGCCCATGTAAAGTCCAATCTTATGAACAAAGGCACGACATATCTCATGTTGGTAAAGTATTATGTGTTAGTGATGTCACTCGTGGTAGTGGGCTTACTCATCGTGTTGGCAAGAGATTTTGTGTGAAGTCTGTTTATGTATTGGGTAAAATATGGATGGATGAAAATATAAAAACCAAGAACCATACGAACACTGTCATGTTTTATCTTGTTCGTGATAGAAGGCCCTTTGGTACTGCTATGGATTTTGGTCAGGTGTTTAACATGTATGATAATGAGCCCAGTACGGCTACTATAAAGAACGATCTTCGAGATCGTTATCAAGTTTTAAGGAAGTTCACTTCAACAGTCACAGGTGGTCAATATGCTTGTAAGGAACAAGCGTTGGTTAGGAAATTTATGAAAGTTAATAACCATGTAGTTTATAATCATCAAGAAGCTGCTAAGTATGACAATCATACTGAGAATGCCTTGTTATTGTATATGGCTTGTACTCATGCCAGTAATCCAGTGTATGCTACTTTGAAGATCAGAATCTATTTTTATGATTCTGTTCAAAATTAATAAAGATTGAATTTTATTATATTATAATGTGTTACATATTCTGTGTGTTCCAATACATCCCATAATACATGATTACATGCTCTAATTACATTGTTAATACTAATTACACCCAATCTATCTAAATATTTCATACATTGAACCCTAAATACTCTTAAGAAACGCCAGGTCTGAGGATGTAAACGAGTCCAGATTCGGAAGATTAGAAAACATTTGTGTATCCCCAACGCTTTCCTCAGGTTGTGATTGAACTGGACCTGGACTTCTATGATGTCGTGGTTCATCAGAAATGGCCTCTCGTGGTGCTGGGTCACTTTGAAATATAGGGGATTGTTGATTGTCCAGATATATACGCCATTCTCTGCTTGAGTTGCAGTGATGAGTTCCCCTGTGCGTGAATCCATATGATGCGCAATTAATTCCAATATAATATGAGCATCCACAAGGAAGATCAATCCGACGTCTCCGAATTGGCCTCTTCTTGGCTATTTTGTGATGGACTTTGACTGGTACCTGAGTACAATGGCTCTTTGAGGGTGAAAAATTCTGCATTCTTTAATGCCCAGTCTTTTAGTGATGAATTCTTGTCCTCGTCCAAGTACTCTTTATATGATGACGTTGGTCCTGGATTGCATAAGAAGATTGTCGGGATACCGCCTTTAATTTGAATTGGTTTCCCGTATTTCGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTGAAATGTTTCAGATAGTGGGGGTCGACGTCATCTATGACGTTATACCATGCGTCGTTGCTGTAGATCTTTGGGCTTAGATCTAGATGTCCGCACAAATAATTATGTGGGCCTAATGATCGAGCCCACATAGTTTTCCCTGTTCTACTCGCACCCTCTATCACTATACTCACGGGTCTCCAGGGCCGCGCAGCGGCATCCCTGACGTTTTCCGCTGCCCAGCATTCAAGTTCTTCTGGAACTTGATCGAAAGAAGAAGAAAGGAAAGGAGAAACAAAAACCTCTAAAGGAGGTGCAAAAATCCTATCTAAATTAGCATTTAAATTATGAAATTGTAATACATAATCTTTGGGTGCTAGTTCTTTGATTACATTAAGAGCCTCCGACTTACTTCCACTGTTAAGTGCTGCTGCGTAAGCGTCGTTGGCTGATTGTTGACCCCCTCTTGCTGATCGTCCGTCGATCTGGAATTCTCCCCATTCGAGAGTGTCTCCGTCCTTGTTGATGTAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGTTTGGGGATACCAGGTCGAAGAATCTGTTATTCGTGCAGTTGTATTTCCCTTCGAACTGTATAAGCACGTGGAGATGAGGGTTCCCATTTTGATGAAGCTCTCGACAGATTTTGATATATTTTTTATTTGTGGGGGTATTGAGGTTTTGTAATTGGGAAAGTGCTTCTTCTTTTGAAAGAGAGCATTCTGGATAAGTGAGGAAATAATTTTTGGCTTTTATAGAAAAACGACCTGTTCTAGGCATTGTGAATTGGGGGGCACTAAAAGTCCTATGCAATCGGGGGAACTAGGGGGCAATATATAGTGCCCCCCAAATGGCATTTACGTAAATACCTAAAGAAATTCAAAATTCATTCGCGCGGCCATCCGTATAATATT
Gene Information
NCBI Accession
|
YP_009129284.1
|
Location
|
133-483 |
Gene Name
|
AV2 |
Protein Name
|
AV2 protein |
Coding Region
|
ATGTGGGATCCACTGTTGAACGAGTTTCCTGAAACTGTTCATGGTCTCCGGTGTATGCTTGCCGTAAAATATTGTCAGTTAATCGAACAGACATATTCTCCGGACACAGTGGGTTACGATCTTATACGAGATTTAATTTCAGTAATTCGTGCTCGCAATTATGTCGAAGCGACCCGCCGATATAGTCATTTCCACTCCCGCCTCGAAGGTACGACGCCGTCTGAACTTCGACACCCCCGTGATGAGCCGTGCTGCTGCCCCCACTGTCCTCGTCACCAACAGAAAAAGGACATGGATCAACAGGCCCATGTATCGCAAGCCCAGACTCTTCAGAATGTACAGAAGCCCTGA |
Protein Sequence
|
MWDPLLNEFPETVHGLRCMLAVKYCQLIEQTYSPDTVGYDLIRDLISVIRARNYVEATRRYSHFHSRLEGTTPSELRHPRDEPCCCPHCPRHQQKKDMDQQAHVSQAQTLQNVQKP |
NCBI Accession
|
YP_009129285.1
|
Location
|
293-1066 |
Gene Name
|
AV1 |
Protein Name
|
coat protein |
Coding Region
|
ATGTCGAAGCGACCCGCCGATATAGTCATTTCCACTCCCGCCTCGAAGGTACGACGCCGTCTGAACTTCGACACCCCCGTGATGAGCCGTGCTGCTGCCCCCACTGTCCTCGTCACCAACAGAAAAAGGACATGGATCAACAGGCCCATGTATCGCAAGCCCAGACTCTTCAGAATGTACAGAAGCCCTGATGTCCCTAAAGGTTGTGAAGGCCCATGTAAAGTCCAATCTTATGAACAAAGGCACGACATATCTCATGTTGGTAAAGTATTATGTGTTAGTGATGTCACTCGTGGTAGTGGGCTTACTCATCGTGTTGGCAAGAGATTTTGTGTGAAGTCTGTTTATGTATTGGGTAAAATATGGATGGATGAAAATATAAAAACCAAGAACCATACGAACACTGTCATGTTTTATCTTGTTCGTGATAGAAGGCCCTTTGGTACTGCTATGGATTTTGGTCAGGTGTTTAACATGTATGATAATGAGCCCAGTACGGCTACTATAAAGAACGATCTTCGAGATCGTTATCAAGTTTTAAGGAAGTTCACTTCAACAGTCACAGGTGGTCAATATGCTTGTAAGGAACAAGCGTTGGTTAGGAAATTTATGAAAGTTAATAACCATGTAGTTTATAATCATCAAGAAGCTGCTAAGTATGACAATCATACTGAGAATGCCTTGTTATTGTATATGGCTTGTACTCATGCCAGTAATCCAGTGTATGCTACTTTGAAGATCAGAATCTATTTTTATGATTCTGTTCAAAATTAA |
Protein Sequence
|
MSKRPADIVISTPASKVRRRLNFDTPVMSRAAAPTVLVTNRKRTWINRPMYRKPRLFRMYRSPDVPKGCEGPCKVQSYEQRHDISHVGKVLCVSDVTRGSGLTHRVGKRFCVKSVYVLGKIWMDENIKTKNHTNTVMFYLVRDRRPFGTAMDFGQVFNMYDNEPSTATIKNDLRDRYQVLRKFTSTVTGGQYACKEQALVRKFMKVNNHVVYNHQEAAKYDNHTENALLLYMACTHASNPVYATLKIRIYFYDSVQN |
NCBI Accession
|
YP_009129286.1
|
Location
|
1063-1467 |
Gene Name
|
AC3 |
Protein Name
|
AC3 protein |
Coding Region
|
ATGGATTCACGCACAGGGGAACTCATCACTGCAACTCAAGCAGAGAATGGCGTATATATCTGGACAATCAACAATCCCCTATATTTCAAAGTGACCCAGCACCACGAGAGGCCATTTCTGATGAACCACGACATCATAGAAGTCCAGGTCCAGTTCAATCACAACCTGAGGAAAGCGTTGGGGATACACAAATGTTTTCTAATCTTCCGAATCTGGACTCGTTTACATCCTCAGACCTGGCGTTTCTTAAGAGTATTTAGGGTTCAATGTATGAAATATTTAGATAGATTGGGTGTAATTAGTATTAACAATGTAATTAGAGCATGTAATCATGTATTATGGGATGTATTGGAACACACAGAATATGTAACACATTATAATATAATAAAATTCAATCTTTATTAA |
Protein Sequence
|
MDSRTGELITATQAENGVYIWTINNPLYFKVTQHHERPFLMNHDIIEVQVQFNHNLRKALGIHKCFLIFRIWTRLHPQTWRFLRVFRVQCMKYLDRLGVISINNVIRACNHVLWDVLEHTEYVTHYNIIKFNLY |
NCBI Accession
|
YP_009129287.1
|
Location
|
1208-1615 |
Gene Name
|
AC2 |
Protein Name
|
AC2 protein |
Coding Region
|
ATGCAGAATTTTTCACCCTCAAAGAGCCATTGTACTCAGGTACCAGTCAAAGTCCATCACAAAATAGCCAAGAAGAGGCCAATTCGGAGACGTCGGATTGATCTTCCTTGTGGATGCTCATATTATATTGGAATTAATTGCGCATCATATGGATTCACGCACAGGGGAACTCATCACTGCAACTCAAGCAGAGAATGGCGTATATATCTGGACAATCAACAATCCCCTATATTTCAAAGTGACCCAGCACCACGAGAGGCCATTTCTGATGAACCACGACATCATAGAAGTCCAGGTCCAGTTCAATCACAACCTGAGGAAAGCGTTGGGGATACACAAATGTTTTCTAATCTTCCGAATCTGGACTCGTTTACATCCTCAGACCTGGCGTTTCTTAAGAGTATTTAG |
Protein Sequence
|
MQNFSPSKSHCTQVPVKVHHKIAKKRPIRRRRIDLPCGCSYYIGINCASYGFTHRGTHHCNSSREWRIYLDNQQSPIFQSDPAPREAISDEPRHHRSPGPVQSQPEESVGDTQMFSNLPNLDSFTSSDLAFLKSI |
NCBI Accession
|
YP_009129288.1
|
Location
|
1515-2603 |
Gene Name
|
AC1 |
Protein Name
|
rep protein |
Coding Region
|
ATGCCTAGAACAGGTCGTTTTTCTATAAAAGCCAAAAATTATTTCCTCACTTATCCAGAATGCTCTCTTTCAAAAGAAGAAGCACTTTCCCAATTACAAAACCTCAATACCCCCACAAATAAAAAATATATCAAAATCTGTCGAGAGCTTCATCAAAATGGGAACCCTCATCTCCACGTGCTTATACAGTTCGAAGGGAAATACAACTGCACGAATAACAGATTCTTCGACCTGGTATCCCCAAACAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTACATCAACAAGGACGGAGACACTCTCGAATGGGGAGAATTCCAGATCGACGGACGATCAGCAAGAGGGGGTCAACAATCAGCCAACGACGCTTACGCAGCAGCACTTAACAGTGGAAGTAAGTCGGAGGCTCTTAATGTAATCAAAGAACTAGCACCCAAAGATTATGTATTACAATTTCATAATTTAAATGCTAATTTAGATAGGATTTTTGCACCTCCTTTAGAGGTTTTTGTTTCTCCTTTCCTTTCTTCTTCTTTCGATCAAGTTCCAGAAGAACTTGAATGCTGGGCAGCGGAAAACGTCAGGGATGCCGCTGCGCGGCCCTGGAGACCCGTGAGTATAGTGATAGAGGGTGCGAGTAGAACAGGGAAAACTATGTGGGCTCGATCATTAGGCCCACATAATTATTTGTGCGGACATCTAGATCTAAGCCCAAAGATCTACAGCAACGACGCATGGTATAACGTCATAGATGACGTCGACCCCCACTATCTGAAACATTTCAAAGAATTCATGGGGGCCCAAAGGGACTGGCAAAGCAACACGAAATACGGGAAACCAATTCAAATTAAAGGCGGTATCCCGACAATCTTCTTATGCAATCCAGGACCAACGTCATCATATAAAGAGTACTTGGACGAGGACAAGAATTCATCACTAAAAGACTGGGCATTAAAGAATGCAGAATTTTTCACCCTCAAAGAGCCATTGTACTCAGGTACCAGTCAAAGTCCATCACAAAATAGCCAAGAAGAGGCCAATTCGGAGACGTCGGATTGA |
Protein Sequence
|
MPRTGRFSIKAKNYFLTYPECSLSKEEALSQLQNLNTPTNKKYIKICRELHQNGNPHLHVLIQFEGKYNCTNNRFFDLVSPNRSAHFHPNIQGAKSSSDVKSYINKDGDTLEWGEFQIDGRSARGGQQSANDAYAAALNSGSKSEALNVIKELAPKDYVLQFHNLNANLDRIFAPPLEVFVSPFLSSSFDQVPEELECWAAENVRDAAARPWRPVSIVIEGASRTGKTMWARSLGPHNYLCGHLDLSPKIYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEYLDEDKNSSLKDWALKNAEFFTLKEPLYSGTSQSPSQNSQEEANSETSD |
NCBI Accession
|
YP_009129289.1
|
Location
|
2156-2446 |
Gene Name
|
AC4 |
Protein Name
|
AC4 protein |
Coding Region
|
ATGGGAACCCTCATCTCCACGTGCTTATACAGTTCGAAGGGAAATACAACTGCACGAATAACAGATTCTTCGACCTGGTATCCCCAAACAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTACATCAACAAGGACGGAGACACTCTCGAATGGGGAGAATTCCAGATCGACGGACGATCAGCAAGAGGGGGTCAACAATCAGCCAACGACGCTTACGCAGCAGCACTTAACAGTGGAAGTAAGTCGGAGGCTCTTAATGTAA |
Protein Sequence
|
MGTLISTCLYSSKGNTTARITDSSTWYPQTGQHISIRTFRELNPAPTSSPTSTRTETLSNGENSRSTDDQQEGVNNQPTTLTQQHLTVEVSRRLLM |