Malvastrum yellow mosaic Helshire virus


Basic Information

Genus Begomovirus
NCBI Assembly GCF_002822785.1
Isolate Jamaica
Release date 2018/8/25
Submitter Graham,A.P., Roye,M.E.
Host
Vector
Download Genome |GFF3 |PEP |CDS

Genomic Organization


JBrowse


Genome

NC_038452
ACCGGATGGCCGCGCGATTTTTCCCTTTTGTTCCCCCCTTTGGTTTCTCACGCGCGCTTCGCTTTTCTCACTCGCGCTCTTGTCCAATCATATTCCGCCTACCGCGCCTAGATATTTCAAACAACTTGGGCCCTAAGTTGTTGTCTGGCCTATATATGAAAAGCGTATTGGGCCATTGTGTCTAACCCAATATGTCTAAGCGGGATGCCCCATGGCGTTCAATGGCGGGAATGTCAAAGGTCCGCCGTACTCTAAATTACTCCCCTCGTGCAGGTTTGGGCCCTAGGAACAACAAGGCCGCTGAGTGGGTCAACAGGCCCATGTACAGGAAGCCCAAGATCTATCGGACGCTAAGGACTCCCGATGTGCCCAGAGGATGTGAAGGCCCATGCAAGGTCCAGTCCTATGAACAGCGTCATGACATCTCCCACGTTGGCAAGGTGATGTGTATTTCTGATGTCACCCGTGGTAATGGCATTACCCACCGTGTGGGTAAGCGTTTCTGTGTTAAGTCTGTGTATATTTTAGGGAAGATATGGATGGATGAGAACATCAAGCTCAAGAACCACACGAACAGTGTCATGTTCTGGTTGGTCAGGGACCGTCGACCCTATGGCACTCCAATGGACTTTGGCCAGGTGTTCAACATGTATGACAACGAGCCTAGCACTGCCACGATTAAGAACGATCTCAGGGATCGTTTTCAGGTTATGCACAGGTTCTATGGCAAAGTCACTGGTGGACAATATGCCAGCAACGAGCAGGCTTTGGTCAGGCGGTTTTGGAAGGTCAACAATCATGTGGTCTACAACCACCAAGAGGCTGGCAAATACGAGAATCACACTGAGAATGCCTTATTATTGTACATGGCATGTACTCATGCTTCTAACCCCGTGTATGCAACATTGAAAATTCGAATCTATTTCTACGATTCGATAACTAATTAATAAAATTTTAATTTTATTTCATGGTTTTCAAGTACATATCTTACATAAACTCGGTCTGTTGCAAACCGAACAGCCCTAATTACATTGTTAAGTGAAATTACACCTAACTCGTCTAAATACATATTAACTAAGCGTCTAAACCTAACTAAATAAGTTGACCCAGAAGCTGTCATCGATGTCGTCCAGACTTGGAAGTTCAGGTAGGCTTTGTGGAGACCCAACACTTTCCTCAGGTTGTGGTTGAATCGTATCTGGATATTGTACACCCTTGTTCTGGTGTATAGCAGGTCCACTACTCTGTATATCCTGAAATAGAGGGGATTTTCTATCTCCCAGATATACACGCCATTCTCTGCATGAGGTGCAGTGATGAGTTCCCCTGTGCGTGAATCCATGTCCTGTACAGCCTATGTGGAAGTAGATGGAGCACCCGCACTCTAGATCAATCCTGCGCCTCCTGATGGCCCTCCTCTTGGCTTGCCTGTGTGCCTTCTTGATACAGGGGGGCTGTGAGGGTGATGAAGATCGCATTCTTGAGAGTCCAGTTCCTGAGACCTATGTTTTCCTCTTTGTCTAGGAAATCTTTATAGCTGGCACCCTCACCAGGATTGCAAAGCACGATTGATGGGATCCCGCCTTTAATTTGAACTGGCTTGCCGTACTTGCAATTTGATTGCCAGTCTTTCTGGGCCCCCAGAAGCTCTTTCCAGTGCTTTAACTTTAGATAATGCGGTGCGACATCATCAATGATGTTATACTCCACATCGTTTGAGAAGACTTTTGAATTAAAGTCTAGGTGGCCACTGAGATAATTATGTGGGCCTAAGGCACGAGCCCACATCGTCTTCCCTGTCCTCGAGTCACCTTCTACAATGAGACTTACTGGTCTCTCCGGCCGCGCAGCGGCACCTCTCCCAAAATAACTGTCCGACCATTCTTGCATCTCGTCCGGCACGTTAGTGAAAGAGGAGAGGGGAAACGGAGGAGACCATGGCTCCGGAGCCTTCATGAAAATCCTATCGAGGTTACTGGATAGGTTATGATACTGGAAAAGAAACTTCTCCGGCAACTTCTCTTTGATGATTTTCATGGCCTCCTCCTTTGTTCCAGCATTTAACGCCTCGGCGGCTGCATCATTAGCTGTCTGCTGACCGCCACGAGCACTTCTTCCGTCGATCTCGAACACTCCCCATTCGATGGTGTCACCGTCTTTCGCGACATAGGACTTGACATCGGAGCTCGACCGAGCTCCCTGAATGTTTGGATGGAAAGGTGCTGACCTGGTTGGGGACACCATGTCGAAGAGTCTGTTATTCGTGCAGTTGAACTTGCCTTCGAGCTGCATGAGCACATGGAGATGAGGCTCCCCATTTTCGTGAAACTCTCGTGAAATTTTGATAAATTTCTTATTTACTGGTGTATGGATTTTTCTAAGTTGTTCTAAGGCTTCCTCTTTGCCAAGAGAGCAACGAGGGTATGTGATGAAATAGTTTTTGGCTTTAATAGAAAATACTCCTTTCCGTGGCATTTTCTGTAAATATTGGTGTTCCCCCAATTGCTCTCTCGCTCAAAACTCTTGTGAATTGGGGGAAATGGGGGAAAACATATAGTAGAAGTTCCATGGGTTAGATCTGCCACGTGGCGGCCATCCGCTATAATATT

Gene Information

NCBI Accession YP_009506437.1
Location 192-947
Protein Name CP
Coding Region ATGTCTAAGCGGGATGCCCCATGGCGTTCAATGGCGGGAATGTCAAAGGTCCGCCGTACTCTAAATTACTCCCCTCGTGCAGGTTTGGGCCCTAGGAACAACAAGGCCGCTGAGTGGGTCAACAGGCCCATGTACAGGAAGCCCAAGATCTATCGGACGCTAAGGACTCCCGATGTGCCCAGAGGATGTGAAGGCCCATGCAAGGTCCAGTCCTATGAACAGCGTCATGACATCTCCCACGTTGGCAAGGTGATGTGTATTTCTGATGTCACCCGTGGTAATGGCATTACCCACCGTGTGGGTAAGCGTTTCTGTGTTAAGTCTGTGTATATTTTAGGGAAGATATGGATGGATGAGAACATCAAGCTCAAGAACCACACGAACAGTGTCATGTTCTGGTTGGTCAGGGACCGTCGACCCTATGGCACTCCAATGGACTTTGGCCAGGTGTTCAACATGTATGACAACGAGCCTAGCACTGCCACGATTAAGAACGATCTCAGGGATCGTTTTCAGGTTATGCACAGGTTCTATGGCAAAGTCACTGGTGGACAATATGCCAGCAACGAGCAGGCTTTGGTCAGGCGGTTTTGGAAGGTCAACAATCATGTGGTCTACAACCACCAAGAGGCTGGCAAATACGAGAATCACACTGAGAATGCCTTATTATTGTACATGGCATGTACTCATGCTTCTAACCCCGTGTATGCAACATTGAAAATTCGAATCTATTTCTACGATTCGATAACTAATTAA
Protein Sequence MSKRDAPWRSMAGMSKVRRTLNYSPRAGLGPRNNKAAEWVNRPMYRKPKIYRTLRTPDVPRGCEGPCKVQSYEQRHDISHVGKVMCISDVTRGNGITHRVGKRFCVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMYDNEPSTATIKNDLRDRFQVMHRFYGKVTGGQYASNEQALVRRFWKVNNHVVYNHQEAGKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSITN

NCBI Accession YP_009506438.1
Location 944-1342
Protein Name REn
Coding Region ATGGATTCACGCACAGGGGAACTCATCACTGCACCTCATGCAGAGAATGGCGTGTATATCTGGGAGATAGAAAATCCCCTCTATTTCAGGATATACAGAGTAGTGGACCTGCTATACACCAGAACAAGGGTGTACAATATCCAGATACGATTCAACCACAACCTGAGGAAAGTGTTGGGTCTCCACAAAGCCTACCTGAACTTCCAAGTCTGGACGACATCGATGACAGCTTCTGGGTCAACTTATTTAGTTAGGTTTAGACGCTTAGTTAATATGTATTTAGACGAGTTAGGTGTAATTTCACTTAACAATGTAATTAGGGCTGTTCGGTTTGCAACAGACCGAGTTTATGTAAGATATGTACTTGAAAACCATGAAATAAAATTAAAATTTTATTAA
Protein Sequence MDSRTGELITAPHAENGVYIWEIENPLYFRIYRVVDLLYTRTRVYNIQIRFNHNLRKVLGLHKAYLNFQVWTTSMTASGSTYLVRFRRLVNMYLDELGVISLNNVIRAVRFATDRVYVRYVLENHEIKLKFY

NCBI Accession YP_009506439.1
Location 1089-1478
Protein Name TrAP
Coding Region ATGCGATCTTCATCACCCTCACAGCCCCCCTGTATCAAGAAGGCACACAGGCAAGCCAAGAGGAGGGCCATCAGGAGGCGCAGGATTGATCTAGAGTGCGGGTGCTCCATCTACTTCCACATAGGCTGTACAGGACATGGATTCACGCACAGGGGAACTCATCACTGCACCTCATGCAGAGAATGGCGTGTATATCTGGGAGATAGAAAATCCCCTCTATTTCAGGATATACAGAGTAGTGGACCTGCTATACACCAGAACAAGGGTGTACAATATCCAGATACGATTCAACCACAACCTGAGGAAAGTGTTGGGTCTCCACAAAGCCTACCTGAACTTCCAAGTCTGGACGACATCGATGACAGCTTCTGGGTCAACTTATTTAGTTAG
Protein Sequence MRSSSPSQPPCIKKAHRQAKRRAIRRRRIDLECGCSIYFHIGCTGHGFTHRGTHHCTSCREWRVYLGDRKSPLFQDIQSSGPAIHQNKGVQYPDTIQPQPEESVGSPQSLPELPSLDDIDDSFWVNLFS

NCBI Accession YP_009506440.1
Location 1390-2475
Protein Name Rep
Coding Region ATGCCACGGAAAGGAGTATTTTCTATTAAAGCCAAAAACTATTTCATCACATACCCTCGTTGCTCTCTTGGCAAAGAGGAAGCCTTAGAACAACTTAGAAAAATCCATACACCAGTAAATAAGAAATTTATCAAAATTTCACGAGAGTTTCACGAAAATGGGGAGCCTCATCTCCATGTGCTCATGCAGCTCGAAGGCAAGTTCAACTGCACGAATAACAGACTCTTCGACATGGTGTCCCCAACCAGGTCAGCACCTTTCCATCCAAACATTCAGGGAGCTCGGTCGAGCTCCGATGTCAAGTCCTATGTCGCGAAAGACGGTGACACCATCGAATGGGGAGTGTTCGAGATCGACGGAAGAAGTGCTCGTGGCGGTCAGCAGACAGCTAATGATGCAGCCGCCGAGGCGTTAAATGCTGGAACAAAGGAGGAGGCCATGAAAATCATCAAAGAGAAGTTGCCGGAGAAGTTTCTTTTCCAGTATCATAACCTATCCAGTAACCTCGATAGGATTTTCATGAAGGCTCCGGAGCCATGGTCTCCTCCGTTTCCCCTCTCCTCTTTCACTAACGTGCCGGACGAGATGCAAGAATGGTCGGACAGTTATTTTGGGAGAGGTGCCGCTGCGCGGCCGGAGAGACCAGTAAGTCTCATTGTAGAAGGTGACTCGAGGACAGGGAAGACGATGTGGGCTCGTGCCTTAGGCCCACATAATTATCTCAGTGGCCACCTAGACTTTAATTCAAAAGTCTTCTCAAACGATGTGGAGTATAACATCATTGATGATGTCGCACCGCATTATCTAAAGTTAAAGCACTGGAAAGAGCTTCTGGGGGCCCAGAAAGACTGGCAATCAAATTGCAAGTACGGCAAGCCAGTTCAAATTAAAGGCGGGATCCCATCAATCGTGCTTTGCAATCCTGGTGAGGGTGCCAGCTATAAAGATTTCCTAGACAAAGAGGAAAACATAGGTCTCAGGAACTGGACTCTCAAGAATGCGATCTTCATCACCCTCACAGCCCCCCTGTATCAAGAAGGCACACAGGCAAGCCAAGAGGAGGGCCATCAGGAGGCGCAGGATTGA
Protein Sequence MPRKGVFSIKAKNYFITYPRCSLGKEEALEQLRKIHTPVNKKFIKISREFHENGEPHLHVLMQLEGKFNCTNNRLFDMVSPTRSAPFHPNIQGARSSSDVKSYVAKDGDTIEWGVFEIDGRSARGGQQTANDAAAEALNAGTKEEAMKIIKEKLPEKFLFQYHNLSSNLDRIFMKAPEPWSPPFPLSSFTNVPDEMQEWSDSYFGRGAAARPERPVSLIVEGDSRTGKTMWARALGPHNYLSGHLDFNSKVFSNDVEYNIIDDVAPHYLKLKHWKELLGAQKDWQSNCKYGKPVQIKGGIPSIVLCNPGEGASYKDFLDKEENIGLRNWTLKNAIFITLTAPLYQEGTQASQEEGHQEAQD

NCBI Accession YP_009506441.1
Location 2061-2318
Protein Name AC4
Coding Region ATGGGGAGCCTCATCTCCATGTGCTCATGCAGCTCGAAGGCAAGTTCAACTGCACGAATAACAGACTCTTCGACATGGTGTCCCCAACCAGGTCAGCACCTTTCCATCCAAACATTCAGGGAGCTCGGTCGAGCTCCGATGTCAAGTCCTATGTCGCGAAAGACGGTGACACCATCGAATGGGGAGTGTTCGAGATCGACGGAAGAAGTGCTCGTGGCGGTCAGCAGACAGCTAATGATGCAGCCGCCGAGGCGTTAA
Protein Sequence MGSLISMCSCSSKASSTARITDSSTWCPQPGQHLSIQTFRELGRAPMSSPMSRKTVTPSNGECSRSTEEVLVAVSRQLMMQPPRR