Lindernia anagallis yellow vein virus


Basic Information

Genus Begomovirus
NCBI Assembly GCF_000873925.1
Isolate Viet Nam: Hanoi
Release date 2015/2/13
Submitter Ha,C., Coombs,S., Revill,P., Harding,R., Vu,M., Dale,J., Ha,C.V., Revill,P.A., Harding,R.M., Vu,M.T., Dale,J.L.
Host
Vector
Download Genome |GFF3 |PEP |CDS

Genomic Organization


JBrowse


Genome

NC_009550
ACCGGATGGCCCGCCGATTTTTTTAAAGTGGGGCCCCGACCAATGATAATGCGCGCTCATCGCTTATTTAGCTTGTGGTCCCTCTATATAAGACTTACGAAGTAAGTTTCGGGTTAAAGATGTGGGACCCTTTAGAGAACGAGTTTCCTGAAACTGTTCACGGTTTTAGGTGTATGCTTGCCGTAAAATACTTGCAGGCTGTAGAAAATACGTATTCTCCAGATACGAAGGGTGCCGAATTTATACGTAGGTTGATCGTAATTCTTAGGAGTCGTAACTATGTCGAAGCGACCTGCAGATATCGTCATCTCTACTCCGAGCTCGAAGGTACGCCGTCGTCTGAATTTCGACAGCCCGTATGCGAGCCGTGCAGCTGCCCCTACTGTCCTCGTCACAAGCAAAAAGAGGTCATGGGCAAGCAGGCCGATGTACAGGAAGCCCAGAATGTACAGGATGTACAGAAGCCCTGATGTGCCCAGGGGATGTGAAGGCCCATGTAAGGTACAGTCATTTGAAAAGAGACATGATGTTAGTCATACTGGTACTGGGCTTTGCGTTTCTGATGTTACTAGAGGTACTGGGCTTACTCATCGTACTGGTAAGAGATTTTGCATTAAGTCCGTTTACATATTGGGTAAGATATGGATGGATGAAAACATCAAGACCAAGAACCATACGAACACCGTATTGTTCTGGCTTGTTAGAGATAGAAGGCCCGTCACTACTCCATATGGGTTTGCTGAAGCATTTAACATGTATGATAATGAGCCATCTACTGCGACTATTAAGAATGACCTTCGAGACAGATTACAAGTTTTGCACAAGTTTGGTGTTACGGTTACTGGTGGACAATATGCGTCTAAGGAACAGGCTATGGTGAAGAAATTCTGGAAGATCAACAATCATGTCACGTACAACCACCAAGAGAAGGCTGCTTATGAGAATCACACTGAGAATGCGTTAATTTTGTATATGGCATGTACTCATGCTTCTAATCCCGTGTATGCTACTCTGAAAATCAGAATCTATTTTTATGATTCTGTTAACAATTAATAAATATTGAATTTTATTATATGTCTCTCGGAAACTGAGAGAGTGTTGTTGAATACATCGTACAATACATAATCTACTGCTCTTATTACATCATTAAGTGAAATTACACCTAAATTATTTAAATAACCTAATACATGTCTACTAAATATTCGCAAGAAACGCGAGGTCGGAGCTCGTAAGGGAGTCAAAACCCGAAAGTTGAGGAAGCATTGGTGTATCTCCAATGCTTTCCTCAGGTTGTGGTTGAACCGTATTTGGAAGTGGACTGTGTTGTATGGCCTGAGAAATGGATTCTCCTCGTATTCCGTTATCTTGAAATAGAGGGGATTTGGAACCGTCCAAATAAACGCGCCATTCCTTGCTTGAGCTGCAGTGATGGGTTCCCCTGTGCGTGAATCCAGAGTCATGGCAGTTGATGGAGAGGTAATAGGTGCACCCGCACGTCAGGTCAATCCTCCGTCGGCGAATTACTTTCTTCTTCGCTGCACGGTGCTGCACTTTGATTGGTACCTGAGTACAATGGCTCCTCGAGGGTGACGAAGGTTGCATTCTTTAAAGCCCAGGCTTTTAATGCGCTGTTCCGCTCTTCGTCTAGGTACTCTTTATATGATGACGTTGGGCCTGGATTGCAGAGGAAGATTGTTGGGATGCCACCTTTAATTTGAATGGGCTTCCCGTACTTTGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGATAGTGGGGGTCTACGTCATCAACCACGTTGTACCATGCCTCGTTGCTGTACACCTTGGGGCTCAAGTCAAGGTGCCCACACAAATAATTATGTGGACCCAAAGACCTAGCCCACATGGTCTTGCCGGTCCTACTATCACCCTCAATAACAATACTAACCGGTCTCCAAGGCCGCGCAGCGGCACCCATGACATTTTCGGACACCCAGCACTCAAGTTCTTCGGGAACTTGATCAAAAGAAGAAGAAGAAAAAGGAGAAATATAAACCTCCAATGGAGGTGTAAAAATCCTATCTAAATTACTATTTAAATTATGAAATTGAAAAATATAATCTTTTGGGAGTTTCTCCCTTATTATTGACATGGCCGCCTCTTTAGAACCTGCGTTTAACGCCTCTGCACATGCGTCGTTAGCGTTCTGGCAACCTCCTCTAGCACTTCTTCCGTCGATCTGGAATTCTCCCCAGTCGAGGGTGTCTCCATCCTTCTCCATATAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGATACCAGATCGAAGAATCGGTTATTCGTGCAGACGAATTTCCCTTCGAATTGCACGAGCACATGGAGATGAGGGCTCCCATCTTCGTGTAGTTCTCTACAGATTTTAATGAATTTTTTATTTGTTGGGGTTTCGATATTCTGTAATTGGGAAAGAGCTTCTTCTTTTGTTAGAGAGCAATGTGGATATGTAAGGAAATAATTTCTGGCTTGTATTTTAAAACGTTTTGGGGGAGCCATTGACTTGGTCAATTGGAGACAATCAAACTTGCGGAATGAATTGGAGACAGGAGACAATATATAGGTGTCTCCAAATGGCATATTGGTAATTATGAATTCTAATTTGAAATTCAAATTTCAAATTGGTAAAGGGCCATCCGCTCTAATATT

Gene Information

NCBI Accession YP_001285754.1
Location 120-470
Gene Name AV2
Protein Name AV2 protein
Coding Region ATGTGGGACCCTTTAGAGAACGAGTTTCCTGAAACTGTTCACGGTTTTAGGTGTATGCTTGCCGTAAAATACTTGCAGGCTGTAGAAAATACGTATTCTCCAGATACGAAGGGTGCCGAATTTATACGTAGGTTGATCGTAATTCTTAGGAGTCGTAACTATGTCGAAGCGACCTGCAGATATCGTCATCTCTACTCCGAGCTCGAAGGTACGCCGTCGTCTGAATTTCGACAGCCCGTATGCGAGCCGTGCAGCTGCCCCTACTGTCCTCGTCACAAGCAAAAAGAGGTCATGGGCAAGCAGGCCGATGTACAGGAAGCCCAGAATGTACAGGATGTACAGAAGCCCTGA
Protein Sequence MWDPLENEFPETVHGFRCMLAVKYLQAVENTYSPDTKGAEFIRRLIVILRSRNYVEATCRYRHLYSELEGTPSSEFRQPVCEPCSCPYCPRHKQKEVMGKQADVQEAQNVQDVQKP

NCBI Accession YP_001285755.1
Location 280-1053
Gene Name AV1
Protein Name CP protein
Coding Region ATGTCGAAGCGACCTGCAGATATCGTCATCTCTACTCCGAGCTCGAAGGTACGCCGTCGTCTGAATTTCGACAGCCCGTATGCGAGCCGTGCAGCTGCCCCTACTGTCCTCGTCACAAGCAAAAAGAGGTCATGGGCAAGCAGGCCGATGTACAGGAAGCCCAGAATGTACAGGATGTACAGAAGCCCTGATGTGCCCAGGGGATGTGAAGGCCCATGTAAGGTACAGTCATTTGAAAAGAGACATGATGTTAGTCATACTGGTACTGGGCTTTGCGTTTCTGATGTTACTAGAGGTACTGGGCTTACTCATCGTACTGGTAAGAGATTTTGCATTAAGTCCGTTTACATATTGGGTAAGATATGGATGGATGAAAACATCAAGACCAAGAACCATACGAACACCGTATTGTTCTGGCTTGTTAGAGATAGAAGGCCCGTCACTACTCCATATGGGTTTGCTGAAGCATTTAACATGTATGATAATGAGCCATCTACTGCGACTATTAAGAATGACCTTCGAGACAGATTACAAGTTTTGCACAAGTTTGGTGTTACGGTTACTGGTGGACAATATGCGTCTAAGGAACAGGCTATGGTGAAGAAATTCTGGAAGATCAACAATCATGTCACGTACAACCACCAAGAGAAGGCTGCTTATGAGAATCACACTGAGAATGCGTTAATTTTGTATATGGCATGTACTCATGCTTCTAATCCCGTGTATGCTACTCTGAAAATCAGAATCTATTTTTATGATTCTGTTAACAATTAA
Protein Sequence MSKRPADIVISTPSSKVRRRLNFDSPYASRAAAPTVLVTSKKRSWASRPMYRKPRMYRMYRSPDVPRGCEGPCKVQSFEKRHDVSHTGTGLCVSDVTRGTGLTHRTGKRFCIKSVYILGKIWMDENIKTKNHTNTVLFWLVRDRRPVTTPYGFAEAFNMYDNEPSTATIKNDLRDRLQVLHKFGVTVTGGQYASKEQAMVKKFWKINNHVTYNHQEKAAYENHTENALILYMACTHASNPVYATLKIRIYFYDSVNN

NCBI Accession YP_001285756.1
Location 1050-1460
Gene Name AC3
Protein Name REn protein
Coding Region ATGACTCTGGATTCACGCACAGGGGAACCCATCACTGCAGCTCAAGCAAGGAATGGCGCGTTTATTTGGACGGTTCCAAATCCCCTCTATTTCAAGATAACGGAATACGAGGAGAATCCATTTCTCAGGCCATACAACACAGTCCACTTCCAAATACGGTTCAACCACAACCTGAGGAAAGCATTGGAGATACACCAATGCTTCCTCAACTTTCGGGTTTTGACTCCCTTACGAGCTCCGACCTCGCGTTTCTTGCGAATATTTAGTAGACATGTATTAGGTTATTTAAATAATTTAGGTGTAATTTCACTTAATGATGTAATAAGAGCAGTAGATTATGTATTGTACGATGTATTCAACAACACTCTCTCAGTTTCCGAGAGACATATAATAAAATTCAATATTTATTAA
Protein Sequence MTLDSRTGEPITAAQARNGAFIWTVPNPLYFKITEYEENPFLRPYNTVHFQIRFNHNLRKALEIHQCFLNFRVLTPLRAPTSRFLRIFSRHVLGYLNNLGVISLNDVIRAVDYVLYDVFNNTLSVSERHIIKFNIY

NCBI Accession YP_001285757.1
Location 1195-1602
Gene Name AC2
Protein Name TrAP protein
Coding Region ATGCAACCTTCGTCACCCTCGAGGAGCCATTGTACTCAGGTACCAATCAAAGTGCAGCACCGTGCAGCGAAGAAGAAAGTAATTCGCCGACGGAGGATTGACCTGACGTGCGGGTGCACCTATTACCTCTCCATCAACTGCCATGACTCTGGATTCACGCACAGGGGAACCCATCACTGCAGCTCAAGCAAGGAATGGCGCGTTTATTTGGACGGTTCCAAATCCCCTCTATTTCAAGATAACGGAATACGAGGAGAATCCATTTCTCAGGCCATACAACACAGTCCACTTCCAAATACGGTTCAACCACAACCTGAGGAAAGCATTGGAGATACACCAATGCTTCCTCAACTTTCGGGTTTTGACTCCCTTACGAGCTCCGACCTCGCGTTTCTTGCGAATATTTAG
Protein Sequence MQPSSPSRSHCTQVPIKVQHRAAKKKVIRRRRIDLTCGCTYYLSINCHDSGFTHRGTHHCSSSKEWRVYLDGSKSPLFQDNGIRGESISQAIQHSPLPNTVQPQPEESIGDTPMLPQLSGFDSLTSSDLAFLANI

NCBI Accession YP_001285758.1
Location 1502-2590
Gene Name AC1
Protein Name rep protein
Coding Region ATGGCTCCCCCAAAACGTTTTAAAATACAAGCCAGAAATTATTTCCTTACATATCCACATTGCTCTCTAACAAAAGAAGAAGCTCTTTCCCAATTACAGAATATCGAAACCCCAACAAATAAAAAATTCATTAAAATCTGTAGAGAACTACACGAAGATGGGAGCCCTCATCTCCATGTGCTCGTGCAATTCGAAGGGAAATTCGTCTGCACGAATAACCGATTCTTCGATCTGGTATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTATATGGAGAAGGATGGAGACACCCTCGACTGGGGAGAATTCCAGATCGACGGAAGAAGTGCTAGAGGAGGTTGCCAGAACGCTAACGACGCATGTGCAGAGGCGTTAAACGCAGGTTCTAAAGAGGCGGCCATGTCAATAATAAGGGAGAAACTCCCAAAAGATTATATTTTTCAATTTCATAATTTAAATAGTAATTTAGATAGGATTTTTACACCTCCATTGGAGGTTTATATTTCTCCTTTTTCTTCTTCTTCTTTTGATCAAGTTCCCGAAGAACTTGAGTGCTGGGTGTCCGAAAATGTCATGGGTGCCGCTGCGCGGCCTTGGAGACCGGTTAGTATTGTTATTGAGGGTGATAGTAGGACCGGCAAGACCATGTGGGCTAGGTCTTTGGGTCCACATAATTATTTGTGTGGGCACCTTGACTTGAGCCCCAAGGTGTACAGCAACGAGGCATGGTACAACGTGGTTGATGACGTAGACCCCCACTATCTAAAGCACTTTAAAGAATTCATGGGGGCCCAAAGGGACTGGCAAAGCAACACAAAGTACGGGAAGCCCATTCAAATTAAAGGTGGCATCCCAACAATCTTCCTCTGCAATCCAGGCCCAACGTCATCATATAAAGAGTACCTAGACGAAGAGCGGAACAGCGCATTAAAAGCCTGGGCTTTAAAGAATGCAACCTTCGTCACCCTCGAGGAGCCATTGTACTCAGGTACCAATCAAAGTGCAGCACCGTGCAGCGAAGAAGAAAGTAATTCGCCGACGGAGGATTGA
Protein Sequence MAPPKRFKIQARNYFLTYPHCSLTKEEALSQLQNIETPTNKKFIKICRELHEDGSPHLHVLVQFEGKFVCTNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYMEKDGDTLDWGEFQIDGRSARGGCQNANDACAEALNAGSKEAAMSIIREKLPKDYIFQFHNLNSNLDRIFTPPLEVYISPFSSSSFDQVPEELECWVSENVMGAAARPWRPVSIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNEAWYNVVDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEYLDEERNSALKAWALKNATFVTLEEPLYSGTNQSAAPCSEEESNSPTED

NCBI Accession YP_001285759.1
Location 2176-2433
Gene Name AC4
Protein Name AC4 protein
Coding Region ATGGGAGCCCTCATCTCCATGTGCTCGTGCAATTCGAAGGGAAATTCGTCTGCACGAATAACCGATTCTTCGATCTGGTATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTATATGGAGAAGGATGGAGACACCCTCGACTGGGGAGAATTCCAGATCGACGGAAGAAGTGCTAGAGGAGGTTGCCAGAACGCTAACGACGCATGTGCAGAGGCGTTAA
Protein Sequence MGALISMCSCNSKGNSSARITDSSIWYPQPGQHISIRTFRELNPAPTSSPIWRRMETPSTGENSRSTEEVLEEVARTLTTHVQRR