Ageratum yellow vein Sri Lanka virus
Basic Information
| Genus |
Begomovirus
|
| NCBI Assembly |
GCF_000838085.1 |
| Isolate |
Sri Lanka |
| Release date |
2015/2/12 |
| Submitter |
Tsai,W.S., Ariyaratne,I., Green,S.K. |
| Vector |
|
| Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCGGATGGCCGCGATTTTTTTTAAAGTGGTCCCCAGAGCACGTGGTCCAATAATAGACGCTCCTTAAAGCTTAATTAATGGCTTGTGGGCCTATATACTTGCCCACCAAGTAGTGGGATTTGTCATCATGTGGGATCCTCTTTTAAACGAGTTCCCCGATACGGTTCACGGATTCCGGTGTATGCTTGCTGTAAAATACTTACAGCTCGTAGAAAATACGTATTCACCTGATTCGTTGGGTTACGATCTAATTCGTGATTTAATCTCAGTTATTAGGGCTAAGAATTATGTCGAAGCGACCAGCAGATATAATCATTTCCACTCCCGCATCGAAGGTGCGTCGCCGTCTCAACTTCGAGACCCCGTACACGAGCCGTGTAGCTGTCCCCACTGTCCGCGTCACAAAGTCACGAGCATGGGCCAACAGGCCCATGAATCGGAAACCCAGAATATACAGAATGTACAGAAGTCCTGATGTTCCCAGAGGATGCGAAGGCCCATGTAAGGTTCAGTCGTTCGAGTCTAGACATGACATATCCCATATTGGGAAGGTAATGTGTATTAGTGATGTCACCCGTGGAATTGGGCTAACTCATAGGGTCGGTAAGAGGTTTTGTGTTAAGTCCGTATATGTATTGGGCAAGGTGTGGATGGATGAGAGTATCAAAACTAAGAATCACACGAATAGTGTGATGTTTTTTTTGTGTCGTGACAGGAGGCCTGTTGACAAACCCCAGGATTTTGGTGAGGTGTTTAATATGTTTGATAATGAGCCCAGTACTGCAACTGTGAAGAATGTTTTTCGTGATCGCTACCAAGTATTGAGGAAATGGCACGCAACTGTCACTGGTGGAACCTATGCGTCCAAGGAGCAGGCTTTGGTTAAGAAGTTTGTTAGGGTTAATAATTATGTTGTTTATAACCAGCAAGAGGCTGGGAAGTATGAGAATCATAGTGAGAATGCTTTGATGTTGTATATGGCGTCTACGCACGCCTCTAATCCTGTGTATGCTACATTGAAGATACGGATCTATTTTTATGATTCTGTATCTAATTAATAAATATTGAATTTTATTGAATGTGATTGTTCAACGTACAAAATGTGATGCAATACATCCCATAAAACATGATCTACTGCTCTAATTACATTGTTTAAACTAATAACCCCTAAACTATCTAAATATTTAAGTGCTTGGTTCTTAAAGACCCTTAAGAAACGACCAGTCTGAGGTTGTGAAGTCATCCAGATTCGGAAGATTAGAAAACACTTGTGAATCCCCAATGCCTTCCTCAGGTTGTGATTGAATTGGATCTGCATTGTGATTATGTCGTGATTCTGAAGGAATGCGCGGTTGTGGTGCTCCGTTATCTTGAAATAAAGGGGATTTTGTATCTCCCAGATATACACGCCATTCTCTGCTTGAGCTGCATTGATGTACTCCCCTGTGCGAGAATCCATGGTTATGACAGGCTAGGGCTATGAAGTATGAGCATCCACAGGGTAGATCAACCCTCCGACGTCTGTTGCTCTTCTTCGCTAACCTGTGTTGGACTTTGATGGGTACCTGAGTAGAGTGGCTCTTCGAGGGTGACGAAGGTCGCATTCTTCAGAGCCCAGTTTTTAAGCGCACTGTTTTTCTCTTCATCCAGATACTCTTTATAGCTTGAATTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAACAGGTTTCCCGTACTTGGTGTTGCTTTGCCAGTCTCTTTGGGCCCCCATGAACTCTTTAAAGTGCTTTAGATAGTGCGGATCGACGTCATCAATGACGTTATACCAGGCATCATTACTGTACACTTTTGGACTCAGGTCGAGATGACCGCACAAATAATTGTGTGGTCCTAGTGACCTGGCCCACATTGTTTTTCCGGTACGACTATCACCCTCAATTACAATACTAATGGGCCTGATAGGCCGCGCAGCGGCACTGACAACGTTTTCACATGCCCACTCTTCAAGTTCTTCTGGAACTTGGTCGAAAGAAGAAGATAAAAAAGGGGAAACATAAACCTCCATTGGAGGTGTAAAAATCCTATCTAAATTTGAATTTAAGTTATGAAATTGTAAAACAAAATCTTTGGGAGCTTTCTCTTTTAATATATTGAGGGCCTGTGCTTTTGACCCTGAATTGATTGCCTCGGCATATGCGTCGTTGGCAGATTGGCAACCTCCTCTAGCTGATCTTCCATCGACTTGGAAAACTCCATGATCAAGGATGTCTCCGTCTTTCTCCATGTAGGTTTTAACATCACTTGAGCTTTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGAGGTAAGGTCGAAGAATCTATTGTTCCTGCACTGGAATTTTCCTTCGAACTGGATGAGAACATGCAAGTGAGGAGTCCCATCTTCGTGAAGCTCTCTGCAGATTCTAATGAATTTTTTAGAAGTTGGGGTTTCGAGATTTAATAATTGGGAAAGTGCTTCTTCTTTAGTTAGAGAGCACTTGGGATAAGTGAGAAAATAATTTTTGGCATTTATTTTAAACCGATTGGTGGCTGCCATGTTGACTAAGTCAATCGGTGTCTCTCAATCTTTTCTATGTATCGGTGTATCGGAGTCCTATATATATGGAGACTCTAATGGCATAATTGTAATTTGGTAAAGTGTGCTTTAATTCAAAATCCTCACGCTCCAAAAGCGGCCATCCGTATAATATT
Gene Information
|
NCBI Accession
|
NP_148951.1
|
|
Location
|
129-476 |
|
Gene Name
|
V2 |
|
Protein Name
|
pre-coat protein |
|
Coding Region
|
ATGTGGGATCCTCTTTTAAACGAGTTCCCCGATACGGTTCACGGATTCCGGTGTATGCTTGCTGTAAAATACTTACAGCTCGTAGAAAATACGTATTCACCTGATTCGTTGGGTTACGATCTAATTCGTGATTTAATCTCAGTTATTAGGGCTAAGAATTATGTCGAAGCGACCAGCAGATATAATCATTTCCACTCCCGCATCGAAGGTGCGTCGCCGTCTCAACTTCGAGACCCCGTACACGAGCCGTGTAGCTGTCCCCACTGTCCGCGTCACAAAGTCACGAGCATGGGCCAACAGGCCCATGAATCGGAAACCCAGAATATACAGAATGTACAGAAGTCCTGA |
|
Protein Sequence
|
MWDPLLNEFPDTVHGFRCMLAVKYLQLVENTYSPDSLGYDLIRDLISVIRAKNYVEATSRYNHFHSRIEGASPSQLRDPVHEPCSCPHCPRHKVTSMGQQAHESETQNIQNVQKS |
|
NCBI Accession
|
NP_148952.1
|
|
Location
|
289-1059 |
|
Gene Name
|
V1 |
|
Protein Name
|
coat protein |
|
Coding Region
|
ATGTCGAAGCGACCAGCAGATATAATCATTTCCACTCCCGCATCGAAGGTGCGTCGCCGTCTCAACTTCGAGACCCCGTACACGAGCCGTGTAGCTGTCCCCACTGTCCGCGTCACAAAGTCACGAGCATGGGCCAACAGGCCCATGAATCGGAAACCCAGAATATACAGAATGTACAGAAGTCCTGATGTTCCCAGAGGATGCGAAGGCCCATGTAAGGTTCAGTCGTTCGAGTCTAGACATGACATATCCCATATTGGGAAGGTAATGTGTATTAGTGATGTCACCCGTGGAATTGGGCTAACTCATAGGGTCGGTAAGAGGTTTTGTGTTAAGTCCGTATATGTATTGGGCAAGGTGTGGATGGATGAGAGTATCAAAACTAAGAATCACACGAATAGTGTGATGTTTTTTTTGTGTCGTGACAGGAGGCCTGTTGACAAACCCCAGGATTTTGGTGAGGTGTTTAATATGTTTGATAATGAGCCCAGTACTGCAACTGTGAAGAATGTTTTTCGTGATCGCTACCAAGTATTGAGGAAATGGCACGCAACTGTCACTGGTGGAACCTATGCGTCCAAGGAGCAGGCTTTGGTTAAGAAGTTTGTTAGGGTTAATAATTATGTTGTTTATAACCAGCAAGAGGCTGGGAAGTATGAGAATCATAGTGAGAATGCTTTGATGTTGTATATGGCGTCTACGCACGCCTCTAATCCTGTGTATGCTACATTGAAGATACGGATCTATTTTTATGATTCTGTATCTAATTAA |
|
Protein Sequence
|
MSKRPADIIISTPASKVRRRLNFETPYTSRVAVPTVRVTKSRAWANRPMNRKPRIYRMYRSPDVPRGCEGPCKVQSFESRHDISHIGKVMCISDVTRGIGLTHRVGKRFCVKSVYVLGKVWMDESIKTKNHTNSVMFFLCRDRRPVDKPQDFGEVFNMFDNEPSTATVKNVFRDRYQVLRKWHATVTGGTYASKEQALVKKFVRVNNYVVYNQQEAGKYENHSENALMLYMASTHASNPVYATLKIRIYFYDSVSN |
|
NCBI Accession
|
NP_148953.1
|
|
Location
|
1056-1460 |
|
Gene Name
|
C3 |
|
Protein Name
|
C3 |
|
Coding Region
|
ATGGATTCTCGCACAGGGGAGTACATCAATGCAGCTCAAGCAGAGAATGGCGTGTATATCTGGGAGATACAAAATCCCCTTTATTTCAAGATAACGGAGCACCACAACCGCGCATTCCTTCAGAATCACGACATAATCACAATGCAGATCCAATTCAATCACAACCTGAGGAAGGCATTGGGGATTCACAAGTGTTTTCTAATCTTCCGAATCTGGATGACTTCACAACCTCAGACTGGTCGTTTCTTAAGGGTCTTTAAGAACCAAGCACTTAAATATTTAGATAGTTTAGGGGTTATTAGTTTAAACAATGTAATTAGAGCAGTAGATCATGTTTTATGGGATGTATTGCATCACATTTTGTACGTTGAACAATCACATTCAATAAAATTCAATATTTATTAA |
|
Protein Sequence
|
MDSRTGEYINAAQAENGVYIWEIQNPLYFKITEHHNRAFLQNHDIITMQIQFNHNLRKALGIHKCFLIFRIWMTSQPQTGRFLRVFKNQALKYLDSLGVISLNNVIRAVDHVLWDVLHHILYVEQSHSIKFNIY |
|
NCBI Accession
|
NP_148954.1
|
|
Location
|
1201-1605 |
|
Gene Name
|
C2 |
|
Protein Name
|
C2 |
|
Coding Region
|
ATGCGACCTTCGTCACCCTCGAAGAGCCACTCTACTCAGGTACCCATCAAAGTCCAACACAGGTTAGCGAAGAAGAGCAACAGACGTCGGAGGGTTGATCTACCCTGTGGATGCTCATACTTCATAGCCCTAGCCTGTCATAACCATGGATTCTCGCACAGGGGAGTACATCAATGCAGCTCAAGCAGAGAATGGCGTGTATATCTGGGAGATACAAAATCCCCTTTATTTCAAGATAACGGAGCACCACAACCGCGCATTCCTTCAGAATCACGACATAATCACAATGCAGATCCAATTCAATCACAACCTGAGGAAGGCATTGGGGATTCACAAGTGTTTTCTAATCTTCCGAATCTGGATGACTTCACAACCTCAGACTGGTCGTTTCTTAAGGGTCTTTAA |
|
Protein Sequence
|
MRPSSPSKSHSTQVPIKVQHRLAKKSNRRRRVDLPCGCSYFIALACHNHGFSHRGVHQCSSSREWRVYLGDTKSPLFQDNGAPQPRIPSESRHNHNADPIQSQPEEGIGDSQVFSNLPNLDDFTTSDWSFLKGL |
|
NCBI Accession
|
NP_148955.1
|
|
Location
|
1508-2593 |
|
Gene Name
|
C1 |
|
Protein Name
|
replication-associated protein |
|
Coding Region
|
ATGGCAGCCACCAATCGGTTTAAAATAAATGCCAAAAATTATTTTCTCACTTATCCCAAGTGCTCTCTAACTAAAGAAGAAGCACTTTCCCAATTATTAAATCTCGAAACCCCAACTTCTAAAAAATTCATTAGAATCTGCAGAGAGCTTCACGAAGATGGGACTCCTCACTTGCATGTTCTCATCCAGTTCGAAGGAAAATTCCAGTGCAGGAACAATAGATTCTTCGACCTTACCTCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAAAGCTCAAGTGATGTTAAAACCTACATGGAGAAAGACGGAGACATCCTTGATCATGGAGTTTTCCAAGTCGATGGAAGATCAGCTAGAGGAGGTTGCCAATCTGCCAACGACGCATATGCCGAGGCAATCAATTCAGGGTCAAAAGCACAGGCCCTCAATATATTAAAAGAGAAAGCTCCCAAAGATTTTGTTTTACAATTTCATAACTTAAATTCAAATTTAGATAGGATTTTTACACCTCCAATGGAGGTTTATGTTTCCCCTTTTTTATCTTCTTCTTTCGACCAAGTTCCAGAAGAACTTGAAGAGTGGGCATGTGAAAACGTTGTCAGTGCCGCTGCGCGGCCTATCAGGCCCATTAGTATTGTAATTGAGGGTGATAGTCGTACCGGAAAAACAATGTGGGCCAGGTCACTAGGACCACACAATTATTTGTGCGGTCATCTCGACCTGAGTCCAAAAGTGTACAGTAATGATGCCTGGTATAACGTCATTGATGACGTCGATCCGCACTATCTAAAGCACTTTAAAGAGTTCATGGGGGCCCAAAGAGACTGGCAAAGCAACACCAAGTACGGGAAACCTGTTCAAATTAAAGGCGGAATTCCCACTATCTTCCTCTGCAATCCAGGACCCAATTCAAGCTATAAAGAGTATCTGGATGAAGAGAAAAACAGTGCGCTTAAAAACTGGGCTCTGAAGAATGCGACCTTCGTCACCCTCGAAGAGCCACTCTACTCAGGTACCCATCAAAGTCCAACACAGGTTAGCGAAGAAGAGCAACAGACGTCGGAGGGTTGA |
|
Protein Sequence
|
MAATNRFKINAKNYFLTYPKCSLTKEEALSQLLNLETPTSKKFIRICRELHEDGTPHLHVLIQFEGKFQCRNNRFFDLTSPTRSAHFHPNIQGAKSSSDVKTYMEKDGDILDHGVFQVDGRSARGGCQSANDAYAEAINSGSKAQALNILKEKAPKDFVLQFHNLNSNLDRIFTPPMEVYVSPFLSSSFDQVPEELEEWACENVVSAAARPIRPISIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEYLDEEKNSALKNWALKNATFVTLEEPLYSGTHQSPTQVSEEEQQTSEG |
|
NCBI Accession
|
NP_148956.1
|
|
Location
|
2143-2436 |
|
Gene Name
|
C4 |
|
Protein Name
|
C4 |
|
Coding Region
|
ATGGGACTCCTCACTTGCATGTTCTCATCCAGTTCGAAGGAAAATTCCAGTGCAGGAACAATAGATTCTTCGACCTTACCTCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAAAGCTCAAGTGATGTTAAAACCTACATGGAGAAAGACGGAGACATCCTTGATCATGGAGTTTTCCAAGTCGATGGAAGATCAGCTAGAGGAGGTTGCCAATCTGCCAACGACGCATATGCCGAGGCAATCAATTCAGGGTCAAAAGCACAGGCCCTCAATATATTAA |
|
Protein Sequence
|
MGLLTCMFSSSSKENSSAGTIDSSTLPPQPGQHISIRTFRELKAQVMLKPTWRKTETSLIMEFSKSMEDQLEEVANLPTTHMPRQSIQGQKHRPSIY |