Jatropha mosaic Nigeria virus


Basic Information

Genus Begomovirus
NCBI Assembly GCF_000900435.1
Isolate Nigeria
Release date 2015/2/22
Submitter Kashina,B.D., Alegbejo,M.D., Banwo,O.O., Nielsen,S.L., Nicolaisen,M.
Host
Vector
Download Genome |GFF3 |PEP |CDS

Genomic Organization


JBrowse


Genome

NC_019034
ACCGGATGGCCGCGCGATACCCGCTCAACGTGGTCCCCACGTGACAAGACATGTCGGCCACTCATGATGCGTCTGTTGAGGTTAGATATGTGTGGTCCCAGGATAAAAACTTCGTCACGAAGTTGGTGAGTCACACAATGTGGGACCCTTTAAGAAATGAATTTCCAGAAACCCTTCATGGGTTTCGTTGTATGTTGGCTGTGAAGTTTTTGCAGGCTCTTGTGGATAGTTACAGTCCGGATACGAAGGGATACGAATACATACGGGATCTTATATGTATTCTACGCTCGCGACATTATAATGAAGCGAACATACGATATGGCCTTCTCGTCTCCCGTATCCAATGTACGCCGGCGTCTCAACTTCGGGAGTCCTCTGGCGTTACCTGCTCCTGCGAGCACTGCCCCCGGCACTTCAAGAAGACGGGCCTGGAGAAACAGGCCCATGAACAGGAAGCCCAGGTTCTACCGGACGTTTAGGAGCCCAGACGTCCCTCGTGGATGTGAAGGCCCATGTAAGGTCCAGTCCTATGAGCAACGCGATGATGTGAAACACACCGGTGTTGTGCGGTGTGTTAGTGATGTTACCCGTGGTTCTGGTATTACCCATCGGGTAGGTAAGCGTTTTTGCATCAAGTCCATCTATATTCTCGGGAAGATTTGGATGGATGAGAATATCAAGAAGCAGAACCACACGAACCAGGTTATGTTTTATTTGGTGCGTGATCGTAGACCCTATGGGACGAGTCCAATGGACTTTGGACAAGTGTTTAACATGTTTGACAACGAGCCGTCAACGGCCACTGTGAAGAACGATCTGCGAGATCGCTTCCAGGTGCTACGGAAGTTCTATGCTACTGTCACTGGTGGTCCTTCGGGAATGAAGGAACAGGCTTTAGTTAAGAGGTTCTTTAGGATTAACAATCATGTTGTTTACAACCATCAGGAACAGGCGAAGTATGAGAATCATACTGAGAACGCGTTATTATTGTATTTGGCATGTACGCATGCTTCGAATCCTGTGTATGCAACGCTGAAGATACGCATCTATTTTTACGATGCCGTCACGAATTAATAAAATTTAAATTTTATTTCATGAAATTCCTGAACTTCGATACAAGTCCTAATTACATTATGTAATACATGATCGACAGATCTAATAACATTATTAATGGAAATTACACCTAACATGTCTAAGTACTTAAGGACTTGGTATTTAAATACTCTCAAGAAAGTCCCAGACCGAGTCTGTGAAGTCGTCCAGATTCGGAAGTTCAGATAACACTTGTGAAGACCCAGTTCCTTCCGGAGGTTGTGGTTGAACCGGATCTGGATGGTGATGATGTCGTGGTTGGTGTTGAATGGCCGCACGCTCTGCTCCGTGGTCGTGAAATATAGGGGATTGTTTATCTCCCAGATAAACACGCCATTCCCTGCTTGAGGAGCAGTGATGTACTCCCCGGTGCGTGAATCCATGGTTAGCACAGTTGAGATGTAGATAGTATGAGCAGCCGCACTCGAGATCGATGCGTCTACGACGTATTCTCTTGGTCTTCGCGATTCTGTGCTTGACTTTGATTGGTACCGGAGTAGAGTGGCTCACTGATGGTGATGAATGTTGCATTTTGAAGTGTCCACCGCTTCAAAGCTGAGTTCTTCTCTTCCTCCAAGAACTCTTTATAGGACGATGTCGGGCCAGGATTGCAGAGGAAGATTGTCGGGATTCCGCCTTTAATTTGAATTGGCTTGCCGTATTTCGTGTTGCTTTGCCAATCACGCTGGGCCCCCATGAACTCTTTGAAATGTTTTAGATAGTGCGGATCCACGTCGTCGATGATGTTGTACCAGGCGTCATTTGAATAGACCTTGGGACTAATGTCCAAATGACCACATAAGTAATTATGTGGACCCAGGCTTCGTGCCCACATTGTTTTGCCCGTACGACTATCGCCCTCGATAACAATACTTTTAGGTCTCCATGGCCGCGCAGCGGCTGCCTTCACATTGTCGGCTACCCACTGCTCAAGTTCGTCCGGAACTTGATCAAATGAAGAGGACATAAAAGGAGATCTATAAATCTCTACGGGAGGAGTGAATATCCTCTCTAAATTGGAATTAAGATTATGAAATTGTAATACATAATCCTTTGGGGCTAATTCTTTAATTAGTCGTAGGGCTTCAGACTTACTGCCTGCGTTCAGCGCCTGTGCGTAAGCATCGTTTATTGATTGTTTGCCTCCTCTCGCTGATCGTCTATCGATCTGGAATTGGCCCCAGTCGAGGACGTCTCCGTCCTTCTCAAGATATGCCTTGACATCGGAGCTAGACTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGATACCAAGTCGAACAATCTGCAATTCGTGAGTCGGACTTTGCCCTCGAATTGGACGAGCACATGCAGATGAGGTTCCCCATTTTGATGCAGTTCTCTGCAGATTCTTATGAATTTGGGGTTTGAAGGGAGTGACAGATTGGTTAATTGCGAAAGAGTTTCTTCTTTCGATAACGAGCACTGCGGATATGTAAGAAATAAGTTCTTACAATTAATTTGGAATTTTTTTGGAGCGTTAGGCATGTTGACTTTGTATGGGTACCCTTGACCGCTCTCGTCTAATCCTCGGGTGCAATTATATTGGTACCCATATATAGGGGGGGTACCAAATGGCACGCTGGTAATTTTTACAACTTCATGTTTGAAATTCAAAGTTTGAAAGTTCCACTAGCGGCCATCCGTATAATATT

Gene Information

NCBI Accession YP_006905835.1
Location 138-479
Protein Name V2
Coding Region ATGTGGGACCCTTTAAGAAATGAATTTCCAGAAACCCTTCATGGGTTTCGTTGTATGTTGGCTGTGAAGTTTTTGCAGGCTCTTGTGGATAGTTACAGTCCGGATACGAAGGGATACGAATACATACGGGATCTTATATGTATTCTACGCTCGCGACATTATAATGAAGCGAACATACGATATGGCCTTCTCGTCTCCCGTATCCAATGTACGCCGGCGTCTCAACTTCGGGAGTCCTCTGGCGTTACCTGCTCCTGCGAGCACTGCCCCCGGCACTTCAAGAAGACGGGCCTGGAGAAACAGGCCCATGAACAGGAAGCCCAGGTTCTACCGGACGTTTAG
Protein Sequence MWDPLRNEFPETLHGFRCMLAVKFLQALVDSYSPDTKGYEYIRDLICILRSRHYNEANIRYGLLVSRIQCTPASQLRESSGVTCSCEHCPRHFKKTGLEKQAHEQEAQVLPDV

NCBI Accession YP_006905836.1
Location 301-1074
Protein Name V1
Coding Region ATGAAGCGAACATACGATATGGCCTTCTCGTCTCCCGTATCCAATGTACGCCGGCGTCTCAACTTCGGGAGTCCTCTGGCGTTACCTGCTCCTGCGAGCACTGCCCCCGGCACTTCAAGAAGACGGGCCTGGAGAAACAGGCCCATGAACAGGAAGCCCAGGTTCTACCGGACGTTTAGGAGCCCAGACGTCCCTCGTGGATGTGAAGGCCCATGTAAGGTCCAGTCCTATGAGCAACGCGATGATGTGAAACACACCGGTGTTGTGCGGTGTGTTAGTGATGTTACCCGTGGTTCTGGTATTACCCATCGGGTAGGTAAGCGTTTTTGCATCAAGTCCATCTATATTCTCGGGAAGATTTGGATGGATGAGAATATCAAGAAGCAGAACCACACGAACCAGGTTATGTTTTATTTGGTGCGTGATCGTAGACCCTATGGGACGAGTCCAATGGACTTTGGACAAGTGTTTAACATGTTTGACAACGAGCCGTCAACGGCCACTGTGAAGAACGATCTGCGAGATCGCTTCCAGGTGCTACGGAAGTTCTATGCTACTGTCACTGGTGGTCCTTCGGGAATGAAGGAACAGGCTTTAGTTAAGAGGTTCTTTAGGATTAACAATCATGTTGTTTACAACCATCAGGAACAGGCGAAGTATGAGAATCATACTGAGAACGCGTTATTATTGTATTTGGCATGTACGCATGCTTCGAATCCTGTGTATGCAACGCTGAAGATACGCATCTATTTTTACGATGCCGTCACGAATTAA
Protein Sequence MKRTYDMAFSSPVSNVRRRLNFGSPLALPAPASTAPGTSRRRAWRNRPMNRKPRFYRTFRSPDVPRGCEGPCKVQSYEQRDDVKHTGVVRCVSDVTRGSGITHRVGKRFCIKSIYILGKIWMDENIKKQNHTNQVMFYLVRDRRPYGTSPMDFGQVFNMFDNEPSTATVKNDLRDRFQVLRKFYATVTGGPSGMKEQALVKRFFRINNHVVYNHQEQAKYENHTENALLLYLACTHASNPVYATLKIRIYFYDAVTN

NCBI Accession YP_006905837.1
Location 1071-1475
Protein Name C3
Coding Region ATGGATTCACGCACCGGGGAGTACATCACTGCTCCTCAAGCAGGGAATGGCGTGTTTATCTGGGAGATAAACAATCCCCTATATTTCACGACCACGGAGCAGAGCGTGCGGCCATTCAACACCAACCACGACATCATCACCATCCAGATCCGGTTCAACCACAACCTCCGGAAGGAACTGGGTCTTCACAAGTGTTATCTGAACTTCCGAATCTGGACGACTTCACAGACTCGGTCTGGGACTTTCTTGAGAGTATTTAAATACCAAGTCCTTAAGTACTTAGACATGTTAGGTGTAATTTCCATTAATAATGTTATTAGATCTGTCGATCATGTATTACATAATGTAATTAGGACTTGTATCGAAGTTCAGGAATTTCATGAAATAAAATTTAAATTTTATTAA
Protein Sequence MDSRTGEYITAPQAGNGVFIWEINNPLYFTTTEQSVRPFNTNHDIITIQIRFNHNLRKELGLHKCYLNFRIWTTSQTRSGTFLRVFKYQVLKYLDMLGVISINNVIRSVDHVLHNVIRTCIEVQEFHEIKFKFY

NCBI Accession YP_006905838.1
Location 1216-1623
Protein Name C2
Coding Region ATGCAACATTCATCACCATCAGTGAGCCACTCTACTCCGGTACCAATCAAAGTCAAGCACAGAATCGCGAAGACCAAGAGAATACGTCGTAGACGCATCGATCTCGAGTGCGGCTGCTCATACTATCTACATCTCAACTGTGCTAACCATGGATTCACGCACCGGGGAGTACATCACTGCTCCTCAAGCAGGGAATGGCGTGTTTATCTGGGAGATAAACAATCCCCTATATTTCACGACCACGGAGCAGAGCGTGCGGCCATTCAACACCAACCACGACATCATCACCATCCAGATCCGGTTCAACCACAACCTCCGGAAGGAACTGGGTCTTCACAAGTGTTATCTGAACTTCCGAATCTGGACGACTTCACAGACTCGGTCTGGGACTTTCTTGAGAGTATTTAA
Protein Sequence MQHSSPSVSHSTPVPIKVKHRIAKTKRIRRRRIDLECGCSYYLHLNCANHGFTHRGVHHCSSSREWRVYLGDKQSPIFHDHGAERAAIQHQPRHHHHPDPVQPQPPEGTGSSQVLSELPNLDDFTDSVWDFLESI

NCBI Accession YP_006905839.1
Location 1532-2614
Protein Name C1
Coding Region ATGCCTAACGCTCCAAAAAAATTCCAAATTAATTGTAAGAACTTATTTCTTACATATCCGCAGTGCTCGTTATCGAAAGAAGAAACTCTTTCGCAATTAACCAATCTGTCACTCCCTTCAAACCCCAAATTCATAAGAATCTGCAGAGAACTGCATCAAAATGGGGAACCTCATCTGCATGTGCTCGTCCAATTCGAGGGCAAAGTCCGACTCACGAATTGCAGATTGTTCGACTTGGTATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAGTCTAGCTCCGATGTCAAGGCATATCTTGAGAAGGACGGAGACGTCCTCGACTGGGGCCAATTCCAGATCGATAGACGATCAGCGAGAGGAGGCAAACAATCAATAAACGATGCTTACGCACAGGCGCTGAACGCAGGCAGTAAGTCTGAAGCCCTACGACTAATTAAAGAATTAGCCCCAAAGGATTATGTATTACAATTTCATAATCTTAATTCCAATTTAGAGAGGATATTCACTCCTCCCGTAGAGATTTATAGATCTCCTTTTATGTCCTCTTCATTTGATCAAGTTCCGGACGAACTTGAGCAGTGGGTAGCCGACAATGTGAAGGCAGCCGCTGCGCGGCCATGGAGACCTAAAAGTATTGTTATCGAGGGCGATAGTCGTACGGGCAAAACAATGTGGGCACGAAGCCTGGGTCCACATAATTACTTATGTGGTCATTTGGACATTAGTCCCAAGGTCTATTCAAATGACGCCTGGTACAACATCATCGACGACGTGGATCCGCACTATCTAAAACATTTCAAAGAGTTCATGGGGGCCCAGCGTGATTGGCAAAGCAACACGAAATACGGCAAGCCAATTCAAATTAAAGGCGGAATCCCGACAATCTTCCTCTGCAATCCTGGCCCGACATCGTCCTATAAAGAGTTCTTGGAGGAAGAGAAGAACTCAGCTTTGAAGCGGTGGACACTTCAAAATGCAACATTCATCACCATCAGTGAGCCACTCTACTCCGGTACCAATCAAAGTCAAGCACAGAATCGCGAAGACCAAGAGAATACGTCGTAG
Protein Sequence MPNAPKKFQINCKNLFLTYPQCSLSKEETLSQLTNLSLPSNPKFIRICRELHQNGEPHLHVLVQFEGKVRLTNCRLFDLVSPTRSAHFHPNIQGAKSSSDVKAYLEKDGDVLDWGQFQIDRRSARGGKQSINDAYAQALNAGSKSEALRLIKELAPKDYVLQFHNLNSNLERIFTPPVEIYRSPFMSSSFDQVPDELEQWVADNVKAAAARPWRPKSIVIEGDSRTGKTMWARSLGPHNYLCGHLDISPKVYSNDAWYNIIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEFLEEEKNSALKRWTLQNATFITISEPLYSGTNQSQAQNREDQENTS

NCBI Accession YP_006905840.1
Location 2221-2454
Protein Name C4
Coding Region ATGGGGAACCTCATCTGCATGTGCTCGTCCAATTCGAGGGCAAAGTCCGACTCACGAATTGCAGATTGTTCGACTTGGTATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAGTCTAGCTCCGATGTCAAGGCATATCTTGAGAAGGACGGAGACGTCCTCGACTGGGGCCAATTCCAGATCGATAGACGATCAGCGAGAGGAGGCAAACAATCAATAA
Protein Sequence MGNLICMCSSNSRAKSDSRIADCSTWYPQPGQHISIRTFRELSLAPMSRHILRRTETSSTGANSRSIDDQREEANNQ