Jatropha mosaic Nigeria virus
Basic Information
Genus |
Begomovirus
|
NCBI Assembly |
GCF_000900435.1 |
Isolate |
Nigeria |
Release date |
2015/2/22 |
Submitter |
Kashina,B.D., Alegbejo,M.D., Banwo,O.O., Nielsen,S.L., Nicolaisen,M. |
Host |
|
Vector |
|
Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCGGATGGCCGCGCGATACCCGCTCAACGTGGTCCCCACGTGACAAGACATGTCGGCCACTCATGATGCGTCTGTTGAGGTTAGATATGTGTGGTCCCAGGATAAAAACTTCGTCACGAAGTTGGTGAGTCACACAATGTGGGACCCTTTAAGAAATGAATTTCCAGAAACCCTTCATGGGTTTCGTTGTATGTTGGCTGTGAAGTTTTTGCAGGCTCTTGTGGATAGTTACAGTCCGGATACGAAGGGATACGAATACATACGGGATCTTATATGTATTCTACGCTCGCGACATTATAATGAAGCGAACATACGATATGGCCTTCTCGTCTCCCGTATCCAATGTACGCCGGCGTCTCAACTTCGGGAGTCCTCTGGCGTTACCTGCTCCTGCGAGCACTGCCCCCGGCACTTCAAGAAGACGGGCCTGGAGAAACAGGCCCATGAACAGGAAGCCCAGGTTCTACCGGACGTTTAGGAGCCCAGACGTCCCTCGTGGATGTGAAGGCCCATGTAAGGTCCAGTCCTATGAGCAACGCGATGATGTGAAACACACCGGTGTTGTGCGGTGTGTTAGTGATGTTACCCGTGGTTCTGGTATTACCCATCGGGTAGGTAAGCGTTTTTGCATCAAGTCCATCTATATTCTCGGGAAGATTTGGATGGATGAGAATATCAAGAAGCAGAACCACACGAACCAGGTTATGTTTTATTTGGTGCGTGATCGTAGACCCTATGGGACGAGTCCAATGGACTTTGGACAAGTGTTTAACATGTTTGACAACGAGCCGTCAACGGCCACTGTGAAGAACGATCTGCGAGATCGCTTCCAGGTGCTACGGAAGTTCTATGCTACTGTCACTGGTGGTCCTTCGGGAATGAAGGAACAGGCTTTAGTTAAGAGGTTCTTTAGGATTAACAATCATGTTGTTTACAACCATCAGGAACAGGCGAAGTATGAGAATCATACTGAGAACGCGTTATTATTGTATTTGGCATGTACGCATGCTTCGAATCCTGTGTATGCAACGCTGAAGATACGCATCTATTTTTACGATGCCGTCACGAATTAATAAAATTTAAATTTTATTTCATGAAATTCCTGAACTTCGATACAAGTCCTAATTACATTATGTAATACATGATCGACAGATCTAATAACATTATTAATGGAAATTACACCTAACATGTCTAAGTACTTAAGGACTTGGTATTTAAATACTCTCAAGAAAGTCCCAGACCGAGTCTGTGAAGTCGTCCAGATTCGGAAGTTCAGATAACACTTGTGAAGACCCAGTTCCTTCCGGAGGTTGTGGTTGAACCGGATCTGGATGGTGATGATGTCGTGGTTGGTGTTGAATGGCCGCACGCTCTGCTCCGTGGTCGTGAAATATAGGGGATTGTTTATCTCCCAGATAAACACGCCATTCCCTGCTTGAGGAGCAGTGATGTACTCCCCGGTGCGTGAATCCATGGTTAGCACAGTTGAGATGTAGATAGTATGAGCAGCCGCACTCGAGATCGATGCGTCTACGACGTATTCTCTTGGTCTTCGCGATTCTGTGCTTGACTTTGATTGGTACCGGAGTAGAGTGGCTCACTGATGGTGATGAATGTTGCATTTTGAAGTGTCCACCGCTTCAAAGCTGAGTTCTTCTCTTCCTCCAAGAACTCTTTATAGGACGATGTCGGGCCAGGATTGCAGAGGAAGATTGTCGGGATTCCGCCTTTAATTTGAATTGGCTTGCCGTATTTCGTGTTGCTTTGCCAATCACGCTGGGCCCCCATGAACTCTTTGAAATGTTTTAGATAGTGCGGATCCACGTCGTCGATGATGTTGTACCAGGCGTCATTTGAATAGACCTTGGGACTAATGTCCAAATGACCACATAAGTAATTATGTGGACCCAGGCTTCGTGCCCACATTGTTTTGCCCGTACGACTATCGCCCTCGATAACAATACTTTTAGGTCTCCATGGCCGCGCAGCGGCTGCCTTCACATTGTCGGCTACCCACTGCTCAAGTTCGTCCGGAACTTGATCAAATGAAGAGGACATAAAAGGAGATCTATAAATCTCTACGGGAGGAGTGAATATCCTCTCTAAATTGGAATTAAGATTATGAAATTGTAATACATAATCCTTTGGGGCTAATTCTTTAATTAGTCGTAGGGCTTCAGACTTACTGCCTGCGTTCAGCGCCTGTGCGTAAGCATCGTTTATTGATTGTTTGCCTCCTCTCGCTGATCGTCTATCGATCTGGAATTGGCCCCAGTCGAGGACGTCTCCGTCCTTCTCAAGATATGCCTTGACATCGGAGCTAGACTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGATACCAAGTCGAACAATCTGCAATTCGTGAGTCGGACTTTGCCCTCGAATTGGACGAGCACATGCAGATGAGGTTCCCCATTTTGATGCAGTTCTCTGCAGATTCTTATGAATTTGGGGTTTGAAGGGAGTGACAGATTGGTTAATTGCGAAAGAGTTTCTTCTTTCGATAACGAGCACTGCGGATATGTAAGAAATAAGTTCTTACAATTAATTTGGAATTTTTTTGGAGCGTTAGGCATGTTGACTTTGTATGGGTACCCTTGACCGCTCTCGTCTAATCCTCGGGTGCAATTATATTGGTACCCATATATAGGGGGGGTACCAAATGGCACGCTGGTAATTTTTACAACTTCATGTTTGAAATTCAAAGTTTGAAAGTTCCACTAGCGGCCATCCGTATAATATT
Gene Information
NCBI Accession
|
YP_006905835.1
|
Location
|
138-479 |
Protein Name
|
V2 |
Coding Region
|
ATGTGGGACCCTTTAAGAAATGAATTTCCAGAAACCCTTCATGGGTTTCGTTGTATGTTGGCTGTGAAGTTTTTGCAGGCTCTTGTGGATAGTTACAGTCCGGATACGAAGGGATACGAATACATACGGGATCTTATATGTATTCTACGCTCGCGACATTATAATGAAGCGAACATACGATATGGCCTTCTCGTCTCCCGTATCCAATGTACGCCGGCGTCTCAACTTCGGGAGTCCTCTGGCGTTACCTGCTCCTGCGAGCACTGCCCCCGGCACTTCAAGAAGACGGGCCTGGAGAAACAGGCCCATGAACAGGAAGCCCAGGTTCTACCGGACGTTTAG |
Protein Sequence
|
MWDPLRNEFPETLHGFRCMLAVKFLQALVDSYSPDTKGYEYIRDLICILRSRHYNEANIRYGLLVSRIQCTPASQLRESSGVTCSCEHCPRHFKKTGLEKQAHEQEAQVLPDV |
NCBI Accession
|
YP_006905836.1
|
Location
|
301-1074 |
Protein Name
|
V1 |
Coding Region
|
ATGAAGCGAACATACGATATGGCCTTCTCGTCTCCCGTATCCAATGTACGCCGGCGTCTCAACTTCGGGAGTCCTCTGGCGTTACCTGCTCCTGCGAGCACTGCCCCCGGCACTTCAAGAAGACGGGCCTGGAGAAACAGGCCCATGAACAGGAAGCCCAGGTTCTACCGGACGTTTAGGAGCCCAGACGTCCCTCGTGGATGTGAAGGCCCATGTAAGGTCCAGTCCTATGAGCAACGCGATGATGTGAAACACACCGGTGTTGTGCGGTGTGTTAGTGATGTTACCCGTGGTTCTGGTATTACCCATCGGGTAGGTAAGCGTTTTTGCATCAAGTCCATCTATATTCTCGGGAAGATTTGGATGGATGAGAATATCAAGAAGCAGAACCACACGAACCAGGTTATGTTTTATTTGGTGCGTGATCGTAGACCCTATGGGACGAGTCCAATGGACTTTGGACAAGTGTTTAACATGTTTGACAACGAGCCGTCAACGGCCACTGTGAAGAACGATCTGCGAGATCGCTTCCAGGTGCTACGGAAGTTCTATGCTACTGTCACTGGTGGTCCTTCGGGAATGAAGGAACAGGCTTTAGTTAAGAGGTTCTTTAGGATTAACAATCATGTTGTTTACAACCATCAGGAACAGGCGAAGTATGAGAATCATACTGAGAACGCGTTATTATTGTATTTGGCATGTACGCATGCTTCGAATCCTGTGTATGCAACGCTGAAGATACGCATCTATTTTTACGATGCCGTCACGAATTAA |
Protein Sequence
|
MKRTYDMAFSSPVSNVRRRLNFGSPLALPAPASTAPGTSRRRAWRNRPMNRKPRFYRTFRSPDVPRGCEGPCKVQSYEQRDDVKHTGVVRCVSDVTRGSGITHRVGKRFCIKSIYILGKIWMDENIKKQNHTNQVMFYLVRDRRPYGTSPMDFGQVFNMFDNEPSTATVKNDLRDRFQVLRKFYATVTGGPSGMKEQALVKRFFRINNHVVYNHQEQAKYENHTENALLLYLACTHASNPVYATLKIRIYFYDAVTN |
NCBI Accession
|
YP_006905837.1
|
Location
|
1071-1475 |
Protein Name
|
C3 |
Coding Region
|
ATGGATTCACGCACCGGGGAGTACATCACTGCTCCTCAAGCAGGGAATGGCGTGTTTATCTGGGAGATAAACAATCCCCTATATTTCACGACCACGGAGCAGAGCGTGCGGCCATTCAACACCAACCACGACATCATCACCATCCAGATCCGGTTCAACCACAACCTCCGGAAGGAACTGGGTCTTCACAAGTGTTATCTGAACTTCCGAATCTGGACGACTTCACAGACTCGGTCTGGGACTTTCTTGAGAGTATTTAAATACCAAGTCCTTAAGTACTTAGACATGTTAGGTGTAATTTCCATTAATAATGTTATTAGATCTGTCGATCATGTATTACATAATGTAATTAGGACTTGTATCGAAGTTCAGGAATTTCATGAAATAAAATTTAAATTTTATTAA |
Protein Sequence
|
MDSRTGEYITAPQAGNGVFIWEINNPLYFTTTEQSVRPFNTNHDIITIQIRFNHNLRKELGLHKCYLNFRIWTTSQTRSGTFLRVFKYQVLKYLDMLGVISINNVIRSVDHVLHNVIRTCIEVQEFHEIKFKFY |
NCBI Accession
|
YP_006905838.1
|
Location
|
1216-1623 |
Protein Name
|
C2 |
Coding Region
|
ATGCAACATTCATCACCATCAGTGAGCCACTCTACTCCGGTACCAATCAAAGTCAAGCACAGAATCGCGAAGACCAAGAGAATACGTCGTAGACGCATCGATCTCGAGTGCGGCTGCTCATACTATCTACATCTCAACTGTGCTAACCATGGATTCACGCACCGGGGAGTACATCACTGCTCCTCAAGCAGGGAATGGCGTGTTTATCTGGGAGATAAACAATCCCCTATATTTCACGACCACGGAGCAGAGCGTGCGGCCATTCAACACCAACCACGACATCATCACCATCCAGATCCGGTTCAACCACAACCTCCGGAAGGAACTGGGTCTTCACAAGTGTTATCTGAACTTCCGAATCTGGACGACTTCACAGACTCGGTCTGGGACTTTCTTGAGAGTATTTAA |
Protein Sequence
|
MQHSSPSVSHSTPVPIKVKHRIAKTKRIRRRRIDLECGCSYYLHLNCANHGFTHRGVHHCSSSREWRVYLGDKQSPIFHDHGAERAAIQHQPRHHHHPDPVQPQPPEGTGSSQVLSELPNLDDFTDSVWDFLESI |
NCBI Accession
|
YP_006905839.1
|
Location
|
1532-2614 |
Protein Name
|
C1 |
Coding Region
|
ATGCCTAACGCTCCAAAAAAATTCCAAATTAATTGTAAGAACTTATTTCTTACATATCCGCAGTGCTCGTTATCGAAAGAAGAAACTCTTTCGCAATTAACCAATCTGTCACTCCCTTCAAACCCCAAATTCATAAGAATCTGCAGAGAACTGCATCAAAATGGGGAACCTCATCTGCATGTGCTCGTCCAATTCGAGGGCAAAGTCCGACTCACGAATTGCAGATTGTTCGACTTGGTATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAGTCTAGCTCCGATGTCAAGGCATATCTTGAGAAGGACGGAGACGTCCTCGACTGGGGCCAATTCCAGATCGATAGACGATCAGCGAGAGGAGGCAAACAATCAATAAACGATGCTTACGCACAGGCGCTGAACGCAGGCAGTAAGTCTGAAGCCCTACGACTAATTAAAGAATTAGCCCCAAAGGATTATGTATTACAATTTCATAATCTTAATTCCAATTTAGAGAGGATATTCACTCCTCCCGTAGAGATTTATAGATCTCCTTTTATGTCCTCTTCATTTGATCAAGTTCCGGACGAACTTGAGCAGTGGGTAGCCGACAATGTGAAGGCAGCCGCTGCGCGGCCATGGAGACCTAAAAGTATTGTTATCGAGGGCGATAGTCGTACGGGCAAAACAATGTGGGCACGAAGCCTGGGTCCACATAATTACTTATGTGGTCATTTGGACATTAGTCCCAAGGTCTATTCAAATGACGCCTGGTACAACATCATCGACGACGTGGATCCGCACTATCTAAAACATTTCAAAGAGTTCATGGGGGCCCAGCGTGATTGGCAAAGCAACACGAAATACGGCAAGCCAATTCAAATTAAAGGCGGAATCCCGACAATCTTCCTCTGCAATCCTGGCCCGACATCGTCCTATAAAGAGTTCTTGGAGGAAGAGAAGAACTCAGCTTTGAAGCGGTGGACACTTCAAAATGCAACATTCATCACCATCAGTGAGCCACTCTACTCCGGTACCAATCAAAGTCAAGCACAGAATCGCGAAGACCAAGAGAATACGTCGTAG |
Protein Sequence
|
MPNAPKKFQINCKNLFLTYPQCSLSKEETLSQLTNLSLPSNPKFIRICRELHQNGEPHLHVLVQFEGKVRLTNCRLFDLVSPTRSAHFHPNIQGAKSSSDVKAYLEKDGDVLDWGQFQIDRRSARGGKQSINDAYAQALNAGSKSEALRLIKELAPKDYVLQFHNLNSNLERIFTPPVEIYRSPFMSSSFDQVPDELEQWVADNVKAAAARPWRPKSIVIEGDSRTGKTMWARSLGPHNYLCGHLDISPKVYSNDAWYNIIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEFLEEEKNSALKRWTLQNATFITISEPLYSGTNQSQAQNREDQENTS |
NCBI Accession
|
YP_006905840.1
|
Location
|
2221-2454 |
Protein Name
|
C4 |
Coding Region
|
ATGGGGAACCTCATCTGCATGTGCTCGTCCAATTCGAGGGCAAAGTCCGACTCACGAATTGCAGATTGTTCGACTTGGTATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAGTCTAGCTCCGATGTCAAGGCATATCTTGAGAAGGACGGAGACGTCCTCGACTGGGGCCAATTCCAGATCGATAGACGATCAGCGAGAGGAGGCAAACAATCAATAA |
Protein Sequence
|
MGNLICMCSSNSRAKSDSRIADCSTWYPQPGQHISIRTFRELSLAPMSRHILRRTETSSTGANSRSIDDQREEANNQ |