Jatropha leaf curl Gujarat virus
Basic Information
Genus |
Begomovirus
|
NCBI Assembly |
GCF_003029055.1 |
Isolate |
India |
Release date |
2018/8/26 |
Submitter |
Agarwal,P., More,P., Agarwal,P.K. |
Host |
|
Vector |
|
Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCGGATGGCCGCGCCCCGCTTTGTGGTGGGCCCCCCCACGTGGAGATGTCCCCCTATCAGAACACTCGCTGAAAGCTTTGATATTTGTGGTCCCCCTATAACAACTTGTCGCCCAAGTTGTTCATCTGCACAATGTGGGACCCTCTCCTCAACGAGTTCCCAGATTCCGTCCACGGTTTCCGGTGTATGCTTGCCGTGAAATACCTTCAGTTGGTGGAAGGTACCTATTCTCCTGACACTCTGGGTCACGAGTTAATCAGGGATCTCATATCTGTCATCAGGGCGAAGAATTATGCCGAAGCGACCAGCAGATATCATCATTTCCACACCAGGCTCGAAGGTTCGTCGCCGTCTGAACTTCGACAGCCCATATGCCAGCCGTGCAGCTGCCCCTACTGTCCGCGTCACAAGAAGTCAGGCCTGGACCAACAGGCCCATGAATCGCAAGCCCAAGTGGTACAGGATTTATAGAAGCCCAGATGTCCCTAAGGGCTGTGAAGGCCCATGTAAGGTCCAGTCCTTTGAGTCTAGACACGACGTCGTTCATATAGGTAAGGTCATGTGCATCTCAGATGTCACCCGTGGAACAGGGTTCACCCATCGCGTAGGTAAGAGGTTCTGCGTCAAGTCCGTGTACATCCTGGGCAAGATATGGATGGACGAAAACATCAAGACCAAGAACCACACGAACACTGTGATGTTCTTCCTCGTCAGGGATCGTAGGCCCGTGGACAAACCCCAGGATTTTGGTGAGGTGTTCAACATGTTCGATAACGAGCCCAGTACTGCTACGGTTAAAAACATGTACCGTGATCGGTACCAGGTGTTAAGGAAGTGGAGTTCCACTGTCACTGGTGGTCAGTATGCGAGCAAAGAGCAGGCAATAGTTAGGCGTTTTTTTAGGGTTAATAATTATGTTGTGTATAATCAGCAAGAGGCTGGTAAGTACGAAAACCATACGGAGAATGCATTGATGCTGTACATGGCGTGTACTCACGCCTCTAACCCCGTGTATGCTACGCTTAAGATACGGATCTACTTCTACGATTCAGTATCCAATTAATAAATTTTAAATTTTATTAAATTTGACTGCTCAACTGATTCAGTCCCTGTGAGTACACTGTACAATACATGCTCTACGGCTCTAACGACCGTATTTATACATATGACCCCTAACATGTCCAGGTATCTGAGTACCTGGTACCTAAAAACCCTCAAGAAACGCAAGGTCTGAGGCCGTAAGGTCGTCCAGATTTTGAAATCCATCCAGCATTGATGTAGTCCCAACGCTTTCCTCAGGTTGTGGTTGAACCGTATCTGGACGGTTATTATGTCGTGTTCCATCAGGAACGGCCGGCTGCTGTGGTCTATGATCTTGAAATAGAGGGGATTTGGAACCTCCCAGGTATAGACGCCATTCATCGCCTGAGCTGCAGTGATGAGTTCCCCTGTGCGTGAATCCATGGTTGTGGCAGTTGATGTGCACGTAGTACGAGCACCCGCAGTTGAGGTCTACTCTCCGTCGCCGGATGGCCCTACGCTTAGCTGCCCTGTGTTGAACCTTGATCGGCACTGGAGTAGAGTGGCCCGTCGAGGGAGATGAAGGTCGCATTTCTTATTGCCCAAGCCTTCAATGCCGTATTCTTCGGCTCGTCAAGGAACTCTTTATAGCTGGAATTGGGCCCAGGATTGCACAGGAAGATAGTGGGTATCCCACCTTTAATTTGAACCGGCTTTCCGTATTTGGTGTTGCTTTGCCAGTCCCTCTGGGCCCCCATGAATTCCTTGAAGTGCTTTAGGTAGTGGGGATCTACGTCATCAATGACGTTGTACCACGCGTCGTTTCTGTAGACCCTAGGACTCAAGTCCAGATGGCCACATAGGTAGTTATGTGGACCCAATGACCTAGCCCACATCGTCTTCCCCGTCCGACTATCGCCCTCTATGACAATACTATTAGGTCTCAAAGGCCGCGCAGCTGCATCCATGACGTTCTCTGACACCCACTGCTCAAGTTCATCTGGAACTTGGTCAAATGAAGATGATGAGAAGGGAGAAACGTACACCTCGGCGGGAGGTGTAAAAATCTTGTCCAGATTTGAGCTGATGTTATGGAAGTCCCTGACATAATCCCTAGGTGCTAATTCCCTAAGGATCCTAAGAGCCTCTGACTTACTTCCGCTGTTAATTGCTGCGGCGTAAGCGTCGTTCGCAGTCTGTTGACCCCCCCGTGCAGATCGCCCGTCGATCTGGAATGTGCCCCATTCAAGGGTATCTCCGTCCTTGTCGATGTAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGTATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGATACCAGGTCGAAGAATCGCTGATTCTGGCATTTGTATTTTCCGTTGAATTGGATGAGCACATGCAGATGAGGCTCCCCATTCTCGTGTATCTCTCGGCAGATTTTGATGAATTTAGGGCTAGTGGGCGTTTGAAGCCCCCTAATTTGGGAAAGAGCCTCTTCTTTAGTGAGAGAGCACCGAGGATATGTGAGGAAATAATTCTTAGCGTTTATAATAAAACGCTTGGGTGGAGACATTTTCTCTCTCCTGAGACCCAATTGGTGCCTCTTCCATTTACTCCTGTAATCGGGTATAAGGTCTCAATATATATGATGATACCCAAATGGCACGGAGTGTAAATATGTGGAATATAATTTGAATTTCAAATTGACACGCGGCCATCCTTATAATATT
Gene Information
NCBI Accession
|
YP_009508299.1
|
Location
|
134-472 |
Gene Name
|
V2 |
Protein Name
|
precoat protein |
Coding Region
|
ATGTGGGACCCTCTCCTCAACGAGTTCCCAGATTCCGTCCACGGTTTCCGGTGTATGCTTGCCGTGAAATACCTTCAGTTGGTGGAAGGTACCTATTCTCCTGACACTCTGGGTCACGAGTTAATCAGGGATCTCATATCTGTCATCAGGGCGAAGAATTATGCCGAAGCGACCAGCAGATATCATCATTTCCACACCAGGCTCGAAGGTTCGTCGCCGTCTGAACTTCGACAGCCCATATGCCAGCCGTGCAGCTGCCCCTACTGTCCGCGTCACAAGAAGTCAGGCCTGGACCAACAGGCCCATGAATCGCAAGCCCAAGTGGTACAGGATTTATAG |
Protein Sequence
|
MWDPLLNEFPDSVHGFRCMLAVKYLQLVEGTYSPDTLGHELIRDLISVIRAKNYAEATSRYHHFHTRLEGSSPSELRQPICQPCSCPYCPRHKKSGLDQQAHESQAQVVQDL |
NCBI Accession
|
YP_009508300.1
|
Location
|
294-1064 |
Gene Name
|
V1 |
Protein Name
|
coat protein |
Coding Region
|
ATGCCGAAGCGACCAGCAGATATCATCATTTCCACACCAGGCTCGAAGGTTCGTCGCCGTCTGAACTTCGACAGCCCATATGCCAGCCGTGCAGCTGCCCCTACTGTCCGCGTCACAAGAAGTCAGGCCTGGACCAACAGGCCCATGAATCGCAAGCCCAAGTGGTACAGGATTTATAGAAGCCCAGATGTCCCTAAGGGCTGTGAAGGCCCATGTAAGGTCCAGTCCTTTGAGTCTAGACACGACGTCGTTCATATAGGTAAGGTCATGTGCATCTCAGATGTCACCCGTGGAACAGGGTTCACCCATCGCGTAGGTAAGAGGTTCTGCGTCAAGTCCGTGTACATCCTGGGCAAGATATGGATGGACGAAAACATCAAGACCAAGAACCACACGAACACTGTGATGTTCTTCCTCGTCAGGGATCGTAGGCCCGTGGACAAACCCCAGGATTTTGGTGAGGTGTTCAACATGTTCGATAACGAGCCCAGTACTGCTACGGTTAAAAACATGTACCGTGATCGGTACCAGGTGTTAAGGAAGTGGAGTTCCACTGTCACTGGTGGTCAGTATGCGAGCAAAGAGCAGGCAATAGTTAGGCGTTTTTTTAGGGTTAATAATTATGTTGTGTATAATCAGCAAGAGGCTGGTAAGTACGAAAACCATACGGAGAATGCATTGATGCTGTACATGGCGTGTACTCACGCCTCTAACCCCGTGTATGCTACGCTTAAGATACGGATCTACTTCTACGATTCAGTATCCAATTAA |
Protein Sequence
|
MPKRPADIIISTPGSKVRRRLNFDSPYASRAAAPTVRVTRSQAWTNRPMNRKPKWYRIYRSPDVPKGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGTGFTHRVGKRFCVKSVYILGKIWMDENIKTKNHTNTVMFFLVRDRRPVDKPQDFGEVFNMFDNEPSTATVKNMYRDRYQVLRKWSSTVTGGQYASKEQAIVRRFFRVNNYVVYNQQEAGKYENHTENALMLYMACTHASNPVYATLKIRIYFYDSVSN |
NCBI Accession
|
YP_009508301.1
|
Location
|
1061-1465 |
Gene Name
|
C3 |
Protein Name
|
AL3 protein |
Coding Region
|
ATGGATTCACGCACAGGGGAACTCATCACTGCAGCTCAGGCGATGAATGGCGTCTATACCTGGGAGGTTCCAAATCCCCTCTATTTCAAGATCATAGACCACAGCAGCCGGCCGTTCCTGATGGAACACGACATAATAACCGTCCAGATACGGTTCAACCACAACCTGAGGAAAGCGTTGGGACTACATCAATGCTGGATGGATTTCAAAATCTGGACGACCTTACGGCCTCAGACCTTGCGTTTCTTGAGGGTTTTTAGGTACCAGGTACTCAGATACCTGGACATGTTAGGGGTCATATGTATAAATACGGTCGTTAGAGCCGTAGAGCATGTATTGTACAGTGTACTCACAGGGACTGAATCAGTTGAGCAGTCAAATTTAATAAAATTTAAAATTTATTAA |
Protein Sequence
|
MDSRTGELITAAQAMNGVYTWEVPNPLYFKIIDHSSRPFLMEHDIITVQIRFNHNLRKALGLHQCWMDFKIWTTLRPQTLRFLRVFRYQVLRYLDMLGVICINTVVRAVEHVLYSVLTGTESVEQSNLIKFKIY |
NCBI Accession
|
YP_009508302.1
|
Location
|
1206-1613 |
Gene Name
|
C2 |
Protein Name
|
transcription activator protein |
Coding Region
|
ATGCGACCTTCATCTCCCTCGACGGGCCACTCTACTCCAGTGCCGATCAAGGTTCAACACAGGGCAGCTAAGCGTAGGGCCATCCGGCGACGGAGAGTAGACCTCAACTGCGGGTGCTCGTACTACGTGCACATCAACTGCCACAACCATGGATTCACGCACAGGGGAACTCATCACTGCAGCTCAGGCGATGAATGGCGTCTATACCTGGGAGGTTCCAAATCCCCTCTATTTCAAGATCATAGACCACAGCAGCCGGCCGTTCCTGATGGAACACGACATAATAACCGTCCAGATACGGTTCAACCACAACCTGAGGAAAGCGTTGGGACTACATCAATGCTGGATGGATTTCAAAATCTGGACGACCTTACGGCCTCAGACCTTGCGTTTCTTGAGGGTTTTTAG |
Protein Sequence
|
MRPSSPSTGHSTPVPIKVQHRAAKRRAIRRRRVDLNCGCSYYVHINCHNHGFTHRGTHHCSSGDEWRLYLGGSKSPLFQDHRPQQPAVPDGTRHNNRPDTVQPQPEESVGTTSMLDGFQNLDDLTASDLAFLEGF |
NCBI Accession
|
YP_009508303.1
|
Location
|
1543-2601 |
Gene Name
|
C1 |
Protein Name
|
replication initiator protein |
Coding Region
|
ATGTCTCCACCCAAGCGTTTTATTATAAACGCTAAGAATTATTTCCTCACATATCCTCGGTGCTCTCTCACTAAAGAAGAGGCTCTTTCCCAAATTAGGGGGCTTCAAACGCCCACTAGCCCTAAATTCATCAAAATCTGCCGAGAGATACACGAGAATGGGGAGCCTCATCTGCATGTGCTCATCCAATTCAACGGAAAATACAAATGCCAGAATCAGCGATTCTTCGACCTGGTATCCCCAACCAGGTCAGCACATTTCCATCCGAACATACAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTACATCGACAAGGACGGAGATACCCTTGAATGGGGCACATTCCAGATCGACGGGCGATCTGCACGGGGGGGTCAACAGACTGCGAACGACGCTTACGCCGCAGCAATTAACAGCGGAAGTAAGTCAGAGGCTCTTAGGATCCTTAGGGAATTAGCACCTAGGGATTATGTCAGGGACTTCCATAACATCAGCTCAAATCTGGACAAGATTTTTACACCTCCCGCCGAGGTGTACGTTTCTCCCTTCTCATCATCTTCATTTGACCAAGTTCCAGATGAACTTGAGCAGTGGGTGTCAGAGAACGTCATGGATGCAGCTGCGCGGCCTTTGAGACCTAATAGTATTGTCATAGAGGGCGATAGTCGGACGGGGAAGACGATGTGGGCTAGGTCATTGGGTCCACATAACTACCTATGTGGCCATCTGGACTTGAGTCCTAGGGTCTACAGAAACGACGCGTGGTACAACGTCATTGATGACGTAGATCCCCACTACCTAAAGCACTTCAAGGAATTCATGGGGGCCCAGAGGGACTGGCAAAGCAACACCAAATACGGAAAGCCGGTTCAAATTAAAGGTGGGATACCCACTATCTTCCTGTGCAATCCTGGGCCCAATTCCAGCTATAAAGAGTTCCTTGACGAGCCGAAGAATACGGCATTGAAGGCTTGGGCAATAAGAAATGCGACCTTCATCTCCCTCGACGGGCCACTCTACTCCAGTGCCGATCAAGGTTCAACACAGGGCAGCTAA |
Protein Sequence
|
MSPPKRFIINAKNYFLTYPRCSLTKEEALSQIRGLQTPTSPKFIKICREIHENGEPHLHVLIQFNGKYKCQNQRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYIDKDGDTLEWGTFQIDGRSARGGQQTANDAYAAAINSGSKSEALRILRELAPRDYVRDFHNISSNLDKIFTPPAEVYVSPFSSSSFDQVPDELEQWVSENVMDAAARPLRPNSIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPRVYRNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEPKNTALKAWAIRNATFISLDGPLYSSADQGSTQGS |
NCBI Accession
|
YP_009508304.1
|
Location
|
2142-2444 |
Gene Name
|
C4 |
Protein Name
|
C4 protein |
Coding Region
|
ATGGGGAGCCTCATCTGCATGTGCTCATCCAATTCAACGGAAAATACAAATGCCAGAATCAGCGATTCTTCGACCTGGTATCCCCAACCAGGTCAGCACATTTCCATCCGAACATACAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTACATCGACAAGGACGGAGATACCCTTGAATGGGGCACATTCCAGATCGACGGGCGATCTGCACGGGGGGGTCAACAGACTGCGAACGACGCTTACGCCGCAGCAATTAACAGCGGAAGTAAGTCAGAGGCTCTTAGGATCCTTAGGGAATTAG |
Protein Sequence
|
MGSLICMCSSNSTENTNARISDSSTWYPQPGQHISIRTYRELNPAPTSSPTSTRTEIPLNGAHSRSTGDLHGGVNRLRTTLTPQQLTAEVSQRLLGSLGN |