Hollyhock yellow vein virus
Basic Information
Genomic Organization
JBrowse
Genome
ACCGGATGGCCGCGAAAAATTTTGGGTGGGTCCTCGACCAATGAAATTGCGCGCTCAGAGCTTAAATAATTATCCCGCGCCTATAAGTACTTCGGCGCTAAGTTTCTATTTCAAAAAATGTGGGATCCACTTTTAAACGAGTTCCCTGATACGGTTTACGGTTTTCGGTGTATGCTTTCTGTCAAATACTTGCAGCTATTGTCTGAAGGATACTCTCCGGATACGGTTGGGTACGAGTTAATTCGCGATCTAATTACTATTGTCCGATCCCGGAATTATGTCGAAGCGTCCTGCAGATATCGTAATTTCTACACCCGCGTCGAAAGTACGCCGGCGTCTGAACTTCGACAGCCCTTACGCGACCCGTGCTGGTGTCCCCACTGTCCGCGTCACAAAGTCAAGGCTATGGGCGAACAGGCCCATGAATCGGAAGCCCAGAATGTACAGAATGTACAGAAGCCCTGATGTTCCAAGGGGCTGTGAGGGTCCATGTAAGGTACAGTCATTTGAGTCCAGACACGATGTAGTCCATATAGGTAAAGTCATGTGTATTAGTGATGTTACTCGCGGTACTGGGCTGACCCATAGAGTTGGGAAACGGTTTTGTGTGAAGTCAGTCTATGTATTGGGTAAGATCTGGATGGATGAAAATATAAAGTCCAAGAATCATACTAACAATGTGATGTTCTTCCTCGTTCGAGATCGACGTCCCACCGGCACGCCTCAAGATTTTGGAGATGTCTTCAACATGTTTGACAACGAGCCTAGCACTGCTACTGTGAAGAATGTCCATCGGGATCGTTACCAGGTCTTGAGGAAATGGTATGCAACTGTCACTGGTGGACAGTATGGTGCAAAGGAACAGGCTTTAGTTAAGAAGTTTGTTAGGGTTAATAATTATGTTGTTTACAACCAGCAAGAGGCAGGGAAATACGAGAATCATTCTGAGAATGCCCTGATGTTGTATATGGCATGTACTCATGCCTCTAATCCTGTTTACGCGACTCTTAAGATTAGGATCTACTTTTATGACTCTGTAACGAATTGAAATTAATATAATTTGAATTTTATTTCTGAAAGTTGTTGCACTTCTACAGTATGAGCAATTACATTCCACAATACATGATTTATTGCCCTAATTACAAAATTAAGTGAAATTACACCTAGATTGTTGAGATACTTGAGGACTTGGGTTCGGAATACTCTTAAGAAAAGACCAATCGGAGGGTGTAAGGTCGTCCAGATTCGGTAGGTCAGAAAACCCTTGTGCATCCCCAGTGCTTTCCTCAGGTTGTGATTGAACTGGATCCTGATGGTGATTATCGTCATTCTCGATGTTGATGGAGCCTCGTAGTGGCTTAGGATCTTGAAATAAAGGGGATTTGGTACGTCCCAGATATACACGCCATTCCATGCTTGAGCTGCAGTGATGGGTTCCCCTGTGCGTGAATCCATGATCGTGGCAGTTGATGGATAGGTAATATGAACAGCCGCAATCAAGATCCACTCTCCTCCGTCTGATCCTCTTCTTGGCCTCTCTGTGTTGGACTTTGATCGGCACTTGAGTATAGTGGTTCCTCGAGGGTGAAGAAGAGTGCATTTTTAATAGCCCAGTTTTTTAGGGCTTGGTTCTTCTCCTCGTCCAGGTACTCTTTATACGATGAGTTTGGCCCAGGATTGCAGAGGAAGATTGTTGGGATCCCACCTTTAATTTGAACTGGCTTCCCGTATTTCGTGTTTGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGTTTGAGGAAGTGCGGATCGACGTCATCAATGACGTTGTACCACGCGTCGTTGCTGTAGACTTTAGGGCTCAGATCTAAATGGCCACAAAGATAATTATGTGGTCCTAATGACCGTGCCCACATCGTTTTGCCCGTACGACTGTCTCCCTCTAACACTAAACTCAAAGGACGCAGAGGCCGCGCAGCGGCGTCCATGACGTTTTCCGATACCCATTCCTCAAGTTCTTCTGGAACTTGATTGAAAGAAGAAGATAAAAAAGGAGAAACATAAACCTCCAAGGGAGGTGTAAAAATCCTATCTAAATTGGCATTTAAATTATGAAATTGTAAAACATAATCTTTGGGAGCTAACTCCCTAAGTACTCTAAGAGCCTCTGGCTTACTGCCGGTGTTAAGTGCCTGGGCGTAAGCATCATTTGCTGTCTGTTGTCCTCCTCTTGCAGATCTTCCATCGATCTGAAACTCTCCCCATTCGAGGGTGTCTCCGTCCTTGTCGATATAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGAATGTTTGGATGGAAATGTATTGACCTGCTTGGGGACACCAGGTCGAAGAATCGCTGATTCTGGCACTTGTATTTCCCCTCGAACTGGATGAGCACGTGAAGATGAGGTTCCCCATTCTCGTGAAGCTCTTTGCAGATTTTGATGAATTTTTTATTTGTTGGGGTTTGTAGGTTTTGAAGTTGGGAAAGTGCTTCCTCTTTTGTAAGAGAGCATTTCGGATAAGTGAGGAAATAATTTTTGGAATTAATAAGAAAACGCTTTGGAGGCATTTTGACCAAATAGAGGACCCGATTGACCAGCTCTTGCAACTCTCCCCTGTATATTGGGTCTCAATATATAGTGATACCCAAATGGCATTGTGGTAATTTCGAGAAGAAATTCAAAACTCTCACGCTCCAAAAAGCGGCCATCCGTATAATATT
Gene Information
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NCBI Accession
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YP_010086869.1
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Location
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118-465 |
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Gene Name
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AV2 |
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Protein Name
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movement protein |
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Coding Region
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ATGTGGGATCCACTTTTAAACGAGTTCCCTGATACGGTTTACGGTTTTCGGTGTATGCTTTCTGTCAAATACTTGCAGCTATTGTCTGAAGGATACTCTCCGGATACGGTTGGGTACGAGTTAATTCGCGATCTAATTACTATTGTCCGATCCCGGAATTATGTCGAAGCGTCCTGCAGATATCGTAATTTCTACACCCGCGTCGAAAGTACGCCGGCGTCTGAACTTCGACAGCCCTTACGCGACCCGTGCTGGTGTCCCCACTGTCCGCGTCACAAAGTCAAGGCTATGGGCGAACAGGCCCATGAATCGGAAGCCCAGAATGTACAGAATGTACAGAAGCCCTGA |
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Protein Sequence
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MWDPLLNEFPDTVYGFRCMLSVKYLQLLSEGYSPDTVGYELIRDLITIVRSRNYVEASCRYRNFYTRVESTPASELRQPLRDPCWCPHCPRHKVKAMGEQAHESEAQNVQNVQKP |
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NCBI Accession
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YP_010086870.1
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Location
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278-1048 |
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Gene Name
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AV1 |
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Protein Name
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coat protein |
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Coding Region
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ATGTCGAAGCGTCCTGCAGATATCGTAATTTCTACACCCGCGTCGAAAGTACGCCGGCGTCTGAACTTCGACAGCCCTTACGCGACCCGTGCTGGTGTCCCCACTGTCCGCGTCACAAAGTCAAGGCTATGGGCGAACAGGCCCATGAATCGGAAGCCCAGAATGTACAGAATGTACAGAAGCCCTGATGTTCCAAGGGGCTGTGAGGGTCCATGTAAGGTACAGTCATTTGAGTCCAGACACGATGTAGTCCATATAGGTAAAGTCATGTGTATTAGTGATGTTACTCGCGGTACTGGGCTGACCCATAGAGTTGGGAAACGGTTTTGTGTGAAGTCAGTCTATGTATTGGGTAAGATCTGGATGGATGAAAATATAAAGTCCAAGAATCATACTAACAATGTGATGTTCTTCCTCGTTCGAGATCGACGTCCCACCGGCACGCCTCAAGATTTTGGAGATGTCTTCAACATGTTTGACAACGAGCCTAGCACTGCTACTGTGAAGAATGTCCATCGGGATCGTTACCAGGTCTTGAGGAAATGGTATGCAACTGTCACTGGTGGACAGTATGGTGCAAAGGAACAGGCTTTAGTTAAGAAGTTTGTTAGGGTTAATAATTATGTTGTTTACAACCAGCAAGAGGCAGGGAAATACGAGAATCATTCTGAGAATGCCCTGATGTTGTATATGGCATGTACTCATGCCTCTAATCCTGTTTACGCGACTCTTAAGATTAGGATCTACTTTTATGACTCTGTAACGAATTGA |
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Protein Sequence
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MSKRPADIVISTPASKVRRRLNFDSPYATRAGVPTVRVTKSRLWANRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGTGLTHRVGKRFCVKSVYVLGKIWMDENIKSKNHTNNVMFFLVRDRRPTGTPQDFGDVFNMFDNEPSTATVKNVHRDRYQVLRKWYATVTGGQYGAKEQALVKKFVRVNNYVVYNQQEAGKYENHSENALMLYMACTHASNPVYATLKIRIYFYDSVTN |
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NCBI Accession
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YP_010086871.1
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Location
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1051-1455 |
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Gene Name
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AC3 |
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Protein Name
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replication enhancer protein |
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Coding Region
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ATGGATTCACGCACAGGGGAACCCATCACTGCAGCTCAAGCATGGAATGGCGTGTATATCTGGGACGTACCAAATCCCCTTTATTTCAAGATCCTAAGCCACTACGAGGCTCCATCAACATCGAGAATGACGATAATCACCATCAGGATCCAGTTCAATCACAACCTGAGGAAAGCACTGGGGATGCACAAGGGTTTTCTGACCTACCGAATCTGGACGACCTTACACCCTCCGATTGGTCTTTTCTTAAGAGTATTCCGAACCCAAGTCCTCAAGTATCTCAACAATCTAGGTGTAATTTCACTTAATTTTGTAATTAGGGCAATAAATCATGTATTGTGGAATGTAATTGCTCATACTGTAGAAGTGCAACAACTTTCAGAAATAAAATTCAAATTATATTAA |
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Protein Sequence
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MDSRTGEPITAAQAWNGVYIWDVPNPLYFKILSHYEAPSTSRMTIITIRIQFNHNLRKALGMHKGFLTYRIWTTLHPPIGLFLRVFRTQVLKYLNNLGVISLNFVIRAINHVLWNVIAHTVEVQQLSEIKFKLY |
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NCBI Accession
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YP_010086872.1
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Location
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1148-1600 |
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Gene Name
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AC2 |
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Protein Name
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transcription activator protein |
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Coding Region
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ATGCACTCTTCTTCACCCTCGAGGAACCACTATACTCAAGTGCCGATCAAAGTCCAACACAGAGAGGCCAAGAAGAGGATCAGACGGAGGAGAGTGGATCTTGATTGCGGCTGTTCATATTACCTATCCATCAACTGCCACGATCATGGATTCACGCACAGGGGAACCCATCACTGCAGCTCAAGCATGGAATGGCGTGTATATCTGGGACGTACCAAATCCCCTTTATTTCAAGATCCTAAGCCACTACGAGGCTCCATCAACATCGAGAATGACGATAATCACCATCAGGATCCAGTTCAATCACAACCTGAGGAAAGCACTGGGGATGCACAAGGGTTTTCTGACCTACCGAATCTGGACGACCTTACACCCTCCGATTGGTCTTTTCTTAAGAGTATTCCGAACCCAAGTCCTCAAGTATCTCAACAATCTAGGTGTAATTTCACTTAA |
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Protein Sequence
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MHSSSPSRNHYTQVPIKVQHREAKKRIRRRRVDLDCGCSYYLSINCHDHGFTHRGTHHCSSSMEWRVYLGRTKSPLFQDPKPLRGSINIENDDNHHQDPVQSQPEESTGDAQGFSDLPNLDDLTPSDWSFLKSIPNPSPQVSQQSRCNFT |
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NCBI Accession
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YP_010086873.1
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Location
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1497-2585 |
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Gene Name
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AC1 |
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Protein Name
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replication associated protein |
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Coding Region
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ATGCCTCCAAAGCGTTTTCTTATTAATTCCAAAAATTATTTCCTCACTTATCCGAAATGCTCTCTTACAAAAGAGGAAGCACTTTCCCAACTTCAAAACCTACAAACCCCAACAAATAAAAAATTCATCAAAATCTGCAAAGAGCTTCACGAGAATGGGGAACCTCATCTTCACGTGCTCATCCAGTTCGAGGGGAAATACAAGTGCCAGAATCAGCGATTCTTCGACCTGGTGTCCCCAAGCAGGTCAATACATTTCCATCCAAACATTCAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTATATCGACAAGGACGGAGACACCCTCGAATGGGGAGAGTTTCAGATCGATGGAAGATCTGCAAGAGGAGGACAACAGACAGCAAATGATGCTTACGCCCAGGCACTTAACACCGGCAGTAAGCCAGAGGCTCTTAGAGTACTTAGGGAGTTAGCTCCCAAAGATTATGTTTTACAATTTCATAATTTAAATGCCAATTTAGATAGGATTTTTACACCTCCCTTGGAGGTTTATGTTTCTCCTTTTTTATCTTCTTCTTTCAATCAAGTTCCAGAAGAACTTGAGGAATGGGTATCGGAAAACGTCATGGACGCCGCTGCGCGGCCTCTGCGTCCTTTGAGTTTAGTGTTAGAGGGAGACAGTCGTACGGGCAAAACGATGTGGGCACGGTCATTAGGACCACATAATTATCTTTGTGGCCATTTAGATCTGAGCCCTAAAGTCTACAGCAACGACGCGTGGTACAACGTCATTGATGACGTCGATCCGCACTTCCTCAAACACTTTAAAGAGTTCATGGGGGCCCAAAGGGACTGGCAATCAAACACGAAATACGGGAAGCCAGTTCAAATTAAAGGTGGGATCCCAACAATCTTCCTCTGCAATCCTGGGCCAAACTCATCGTATAAAGAGTACCTGGACGAGGAGAAGAACCAAGCCCTAAAAAACTGGGCTATTAAAAATGCACTCTTCTTCACCCTCGAGGAACCACTATACTCAAGTGCCGATCAAAGTCCAACACAGAGAGGCCAAGAAGAGGATCAGACGGAGGAGAGTGGATCTTGA |
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Protein Sequence
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MPPKRFLINSKNYFLTYPKCSLTKEEALSQLQNLQTPTNKKFIKICKELHENGEPHLHVLIQFEGKYKCQNQRFFDLVSPSRSIHFHPNIQGAKSSSDVKSYIDKDGDTLEWGEFQIDGRSARGGQQTANDAYAQALNTGSKPEALRVLRELAPKDYVLQFHNLNANLDRIFTPPLEVYVSPFLSSSFNQVPEELEEWVSENVMDAAARPLRPLSLVLEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHFLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEYLDEEKNQALKNWAIKNALFFTLEEPLYSSADQSPTQRGQEEDQTEESGS |
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NCBI Accession
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YP_010086874.1
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Location
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2129-2431 |
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Gene Name
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AC4 |
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Protein Name
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regulatory protein |
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Coding Region
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ATGGGGAACCTCATCTTCACGTGCTCATCCAGTTCGAGGGGAAATACAAGTGCCAGAATCAGCGATTCTTCGACCTGGTGTCCCCAAGCAGGTCAATACATTTCCATCCAAACATTCAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTATATCGACAAGGACGGAGACACCCTCGAATGGGGAGAGTTTCAGATCGATGGAAGATCTGCAAGAGGAGGACAACAGACAGCAAATGATGCTTACGCCCAGGCACTTAACACCGGCAGTAAGCCAGAGGCTCTTAGAGTACTTAGGGAGTTAG |
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Protein Sequence
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MGNLIFTCSSSSRGNTSARISDSSTWCPQAGQYISIQTFRELNPAPTSSPISTRTETPSNGESFRSMEDLQEEDNRQQMMLTPRHLTPAVSQRLLEYLGS |