Hollyhock yellow vein mosaic virus


Basic Information

Genus Begomovirus
NCBI Assembly GCF_000896675.1
Isolate Pakistan:Lahore
Release date 2015/2/22
Submitter Zia Ur Rehman,M., Haider,M.S., Zia ur Rehman,M.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization


JBrowse


Genome

NC_016649
ACCGGATGGCCGCGCGATTTTTTTTGTGGGCCCCTCCACTAACTCTTGTCTGCCAATCAAATGACGCGCTCAAAGCTTAAATAATTTCCCGCCTATTATAAGTACTTCTTCGACAAGTTTCATTTTGAAAATGTGGGATCCACTGTTAAACGAGTTCCCTGAGACTGTTCACGGGTTTCGTTGCATGCTTGCGATTAAATATCTTCAACAACTGTCTGAAGAATACTCTCCTGATACGGTAGGTTACGATCTAATTCGCGATTTAATTTCTATTTTACGTTCCAGGAATTATGTCGAAGCGTCCTGCCGATATCGTCATTTCTACCCCCGCGTCGAAGGTGCGTCGTCGACTGAACTTCGACAGCCCCTATGCAACCCGTGCAGTTGCCCCCACTGTCCGCGTCACAAAGTCTCGCATTTGGGCGAACAGGCCCATGTATCGGAAGCCCAGAATGTACAGGATGTACAGAAGCCCTGATGTTCCTAAGGGTTGTGAAGGCCCATGTAAGGTGCAGTCTTTCGATGCGAAAAATGATATTGGGCATATGGGTAAGGTAATTTGTCTTTCTGATGTTACTAGGGGTATTGGGCTGACCCATCGAGTAGGGAAACGTTTTTGCGTTAAGTCATTGTATTTTGTTGGCAAAATATGGATGGACGAGAACATCAAGACTAAGAACCATACAAACACTGTTTTGTTCTGGATCGTGAGAGACAGGCGTCCTTCAGGAACTCCTAATGATTTCCAGCAAGTTTTCAATGTTTATGATAACGAGCCTTCTACGGCTACTGTGAAGAACGACCAGCGTAATCGTTTTCAGGTGTTGAGGAGGTTCCAGGCAACAGTCACAGGTGGTCAATATGCTGCTAAGGAACAAGCTATAATCAGGAAATTCTATCGTGTTAACAATTATGTTGTCTATAATCACCAGGAAGCTGGGAAGTATGAGAATCACACTGAGAATGCTTTGTTGTTGTACATGGCATGTACCCATGCCTCTAACCCCGTGTATGCTACTTTGAAAGTTAGAAGTTATTTCTATGATTCTGTAACCAATTAATATTAATAAATATCGAATTTTATTTCTGAAACTTGGTCTACATACATAGTTTGTTCTATTTTACTGTACAATACATGATCTACTGCTCTAATAATCGAATTAATTGAGATTACTCCTATATTGTTGAGATACTTTATGACTTGGGTCTTGAATACCCTTAAGAAAAGACCAGTCGGAGGGTGTAAGGTCGTCCAAACCCGGAAGGTCAGAAAACACTTGTGCACTCCCAGAGCTCTCCGAAGGTTGTAGTTGAATTGGATCCTGATTGTTATTATGTCCATCTTGCTCGAGTAAGGACAGACCTCGTGGCTTAGGATCTTGAAATAAAGGGGATTTGGTACTTCCCAGATATAGGCGCCACTCCATGCTTGAGCTGCAGTGATGGGTTCCTCTGTGCGTAAATCCATGGTTGAAACAGTTTATAGACAGATAATAAGAACACCCGCATTCAAGATCTACTCTCCTCCTCCTGTTGCGTTTCTTCGCTTCCCTGTGCTGTACTTTGATTGGAACCTGAGTACAGTGGTCCTTCAAGGGTGACGAAGATCGCATTCTTGTCTGTCCAGTTCTTTAGTGCAGTGTTCTTTTCCTCGTCCAGGAATTCTTTATAACTGCTGTTAGGACCAGGATTGCAGAGGAAGATTGTTGGTATTCCGCCTTTAATTTGAACTGGCTTCCCGTACTTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGTTTGAGGAAGTGCGGATCAACGTCATCAATGACGTTATACCAAGCGTCATTACTGTACACCTTTGGGCTTAGATCTAAATGCCCACATAAATAGTTATGTGGGCCTAAAGACCTAGCCCACATTGTTTTCCCAGTACGACTGTCGCCCTCAATTACTATACTTTGAGGTCTCAGGGGCCGCGCAGCGGCGTCGACAACATTTACACACGCCCACTCTTCAAGTTCTTCTGGAACTTGATCGAAAGAAGAAGACGAAAAAGGAGAAACATAAGGAGCTGGTGGCTCCTGAAAGATCCTGTCTAGATTTGCATTTAAATTATGAAATTGTAGTACAAAATCTTTAGGAGCTAGTTCCTTAATGACTCTAAGAGCCTCCGACTTACTTCCCGCGTTAAGTGCTGCGGCGTAAGCGTCGTTGGCTGTCTGTTGCCCTCCTCTTGCTGATCTTCCATCGATCTGAAATTCTCCCCAGTCGAGAATGTCCCCGTCCTTGGCGATGTAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGATACGAGGTCGAAGAATCTGTTATTTTTGCACTTGTATTTGCCTTCGAACTGGATGAGCACGTGAAGATGAGGTTCCCCATTTTCATGAAACTCTCTGCAGATTCTAATGTATTTTTTGTTTACTGGGGTTTGTAGGTTTTGTAATTGGGAAAGTGCCTCCTCTTTAGTAAGAGAGCATGTGGGATAAGTGATGAAATAATTTTTGGCATTTATCTGGAATTGTTTGGGAGGAGCCATTGACTTGGTCAATCGGTACCCAGCACTAGTCTTATGGCAATTGGGGAACGGTACCCTATATATAGTTGGGTACCAAATGGCAATAATTGTAATTACGTAATCAAATTCAAAATCCTCGCGCTCCAAAAAGCGGCCATCCGTATAATATT

Gene Information

NCBI Accession YP_005086953.1
Location 131-478
Gene Name av2
Protein Name pre-coat protein
Coding Region ATGTGGGATCCACTGTTAAACGAGTTCCCTGAGACTGTTCACGGGTTTCGTTGCATGCTTGCGATTAAATATCTTCAACAACTGTCTGAAGAATACTCTCCTGATACGGTAGGTTACGATCTAATTCGCGATTTAATTTCTATTTTACGTTCCAGGAATTATGTCGAAGCGTCCTGCCGATATCGTCATTTCTACCCCCGCGTCGAAGGTGCGTCGTCGACTGAACTTCGACAGCCCCTATGCAACCCGTGCAGTTGCCCCCACTGTCCGCGTCACAAAGTCTCGCATTTGGGCGAACAGGCCCATGTATCGGAAGCCCAGAATGTACAGGATGTACAGAAGCCCTGA
Protein Sequence MWDPLLNEFPETVHGFRCMLAIKYLQQLSEEYSPDTVGYDLIRDLISILRSRNYVEASCRYRHFYPRVEGASSTELRQPLCNPCSCPHCPRHKVSHLGEQAHVSEAQNVQDVQKP

NCBI Accession YP_005086954.1
Location 291-1061
Gene Name av1
Protein Name coat protein
Coding Region ATGTCGAAGCGTCCTGCCGATATCGTCATTTCTACCCCCGCGTCGAAGGTGCGTCGTCGACTGAACTTCGACAGCCCCTATGCAACCCGTGCAGTTGCCCCCACTGTCCGCGTCACAAAGTCTCGCATTTGGGCGAACAGGCCCATGTATCGGAAGCCCAGAATGTACAGGATGTACAGAAGCCCTGATGTTCCTAAGGGTTGTGAAGGCCCATGTAAGGTGCAGTCTTTCGATGCGAAAAATGATATTGGGCATATGGGTAAGGTAATTTGTCTTTCTGATGTTACTAGGGGTATTGGGCTGACCCATCGAGTAGGGAAACGTTTTTGCGTTAAGTCATTGTATTTTGTTGGCAAAATATGGATGGACGAGAACATCAAGACTAAGAACCATACAAACACTGTTTTGTTCTGGATCGTGAGAGACAGGCGTCCTTCAGGAACTCCTAATGATTTCCAGCAAGTTTTCAATGTTTATGATAACGAGCCTTCTACGGCTACTGTGAAGAACGACCAGCGTAATCGTTTTCAGGTGTTGAGGAGGTTCCAGGCAACAGTCACAGGTGGTCAATATGCTGCTAAGGAACAAGCTATAATCAGGAAATTCTATCGTGTTAACAATTATGTTGTCTATAATCACCAGGAAGCTGGGAAGTATGAGAATCACACTGAGAATGCTTTGTTGTTGTACATGGCATGTACCCATGCCTCTAACCCCGTGTATGCTACTTTGAAAGTTAGAAGTTATTTCTATGATTCTGTAACCAATTAA
Protein Sequence MSKRPADIVISTPASKVRRRLNFDSPYATRAVAPTVRVTKSRIWANRPMYRKPRMYRMYRSPDVPKGCEGPCKVQSFDAKNDIGHMGKVICLSDVTRGIGLTHRVGKRFCVKSLYFVGKIWMDENIKTKNHTNTVLFWIVRDRRPSGTPNDFQQVFNVYDNEPSTATVKNDQRNRFQVLRRFQATVTGGQYAAKEQAIIRKFYRVNNYVVYNHQEAGKYENHTENALLLYMACTHASNPVYATLKVRSYFYDSVTN

NCBI Accession YP_005086955.1
Location 1064-1468
Gene Name ac3
Protein Name replication enhancer protein
Coding Region ATGGATTTACGCACAGAGGAACCCATCACTGCAGCTCAAGCATGGAGTGGCGCCTATATCTGGGAAGTACCAAATCCCCTTTATTTCAAGATCCTAAGCCACGAGGTCTGTCCTTACTCGAGCAAGATGGACATAATAACAATCAGGATCCAATTCAACTACAACCTTCGGAGAGCTCTGGGAGTGCACAAGTGTTTTCTGACCTTCCGGGTTTGGACGACCTTACACCCTCCGACTGGTCTTTTCTTAAGGGTATTCAAGACCCAAGTCATAAAGTATCTCAACAATATAGGAGTAATCTCAATTAATTCGATTATTAGAGCAGTAGATCATGTATTGTACAGTAAAATAGAACAAACTATGTATGTAGACCAAGTTTCAGAAATAAAATTCGATATTTATTAA
Protein Sequence MDLRTEEPITAAQAWSGAYIWEVPNPLYFKILSHEVCPYSSKMDIITIRIQFNYNLRRALGVHKCFLTFRVWTTLHPPTGLFLRVFKTQVIKYLNNIGVISINSIIRAVDHVLYSKIEQTMYVDQVSEIKFDIY

NCBI Accession YP_005086956.1
Location 1161-1613
Gene Name ac2
Protein Name transcriptional activator protein
Coding Region ATGCGATCTTCGTCACCCTTGAAGGACCACTGTACTCAGGTTCCAATCAAAGTACAGCACAGGGAAGCGAAGAAACGCAACAGGAGGAGGAGAGTAGATCTTGAATGCGGGTGTTCTTATTATCTGTCTATAAACTGTTTCAACCATGGATTTACGCACAGAGGAACCCATCACTGCAGCTCAAGCATGGAGTGGCGCCTATATCTGGGAAGTACCAAATCCCCTTTATTTCAAGATCCTAAGCCACGAGGTCTGTCCTTACTCGAGCAAGATGGACATAATAACAATCAGGATCCAATTCAACTACAACCTTCGGAGAGCTCTGGGAGTGCACAAGTGTTTTCTGACCTTCCGGGTTTGGACGACCTTACACCCTCCGACTGGTCTTTTCTTAAGGGTATTCAAGACCCAAGTCATAAAGTATCTCAACAATATAGGAGTAATCTCAATTAA
Protein Sequence MRSSSPLKDHCTQVPIKVQHREAKKRNRRRRVDLECGCSYYLSINCFNHGFTHRGTHHCSSSMEWRLYLGSTKSPLFQDPKPRGLSLLEQDGHNNNQDPIQLQPSESSGSAQVFSDLPGLDDLTPSDWSFLKGIQDPSHKVSQQYRSNLN

NCBI Accession YP_005086957.1
Location 1510-2601
Gene Name ac1
Protein Name replication associated protein
Coding Region ATGGCTCCTCCCAAACAATTCCAGATAAATGCCAAAAATTATTTCATCACTTATCCCACATGCTCTCTTACTAAAGAGGAGGCACTTTCCCAATTACAAAACCTACAAACCCCAGTAAACAAAAAATACATTAGAATCTGCAGAGAGTTTCATGAAAATGGGGAACCTCATCTTCACGTGCTCATCCAGTTCGAAGGCAAATACAAGTGCAAAAATAACAGATTCTTCGACCTCGTATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTACATCGCCAAGGACGGGGACATTCTCGACTGGGGAGAATTTCAGATCGATGGAAGATCAGCAAGAGGAGGGCAACAGACAGCCAACGACGCTTACGCCGCAGCACTTAACGCGGGAAGTAAGTCGGAGGCTCTTAGAGTCATTAAGGAACTAGCTCCTAAAGATTTTGTACTACAATTTCATAATTTAAATGCAAATCTAGACAGGATCTTTCAGGAGCCACCAGCTCCTTATGTTTCTCCTTTTTCGTCTTCTTCTTTCGATCAAGTTCCAGAAGAACTTGAAGAGTGGGCGTGTGTAAATGTTGTCGACGCCGCTGCGCGGCCCCTGAGACCTCAAAGTATAGTAATTGAGGGCGACAGTCGTACTGGGAAAACAATGTGGGCTAGGTCTTTAGGCCCACATAACTATTTATGTGGGCATTTAGATCTAAGCCCAAAGGTGTACAGTAATGACGCTTGGTATAACGTCATTGATGACGTTGATCCGCACTTCCTCAAACACTTTAAAGAGTTCATGGGGGCCCAAAGGGACTGGCAATCCAACACAAAGTACGGGAAGCCAGTTCAAATTAAAGGCGGAATACCAACAATCTTCCTCTGCAATCCTGGTCCTAACAGCAGTTATAAAGAATTCCTGGACGAGGAAAAGAACACTGCACTAAAGAACTGGACAGACAAGAATGCGATCTTCGTCACCCTTGAAGGACCACTGTACTCAGGTTCCAATCAAAGTACAGCACAGGGAAGCGAAGAAACGCAACAGGAGGAGGAGAGTAGATCTTGA
Protein Sequence MAPPKQFQINAKNYFITYPTCSLTKEEALSQLQNLQTPVNKKYIRICREFHENGEPHLHVLIQFEGKYKCKNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYIAKDGDILDWGEFQIDGRSARGGQQTANDAYAAALNAGSKSEALRVIKELAPKDFVLQFHNLNANLDRIFQEPPAPYVSPFSSSSFDQVPEELEEWACVNVVDAAARPLRPQSIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHFLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNTALKNWTDKNAIFVTLEGPLYSGSNQSTAQGSEETQQEEESRS

NCBI Accession YP_005086958.1
Location 2142-2450
Gene Name ac4
Protein Name AC4 protein
Coding Region ATGAAAATGGGGAACCTCATCTTCACGTGCTCATCCAGTTCGAAGGCAAATACAAGTGCAAAAATAACAGATTCTTCGACCTCGTATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTACATCGCCAAGGACGGGGACATTCTCGACTGGGGAGAATTTCAGATCGATGGAAGATCAGCAAGAGGAGGGCAACAGACAGCCAACGACGCTTACGCCGCAGCACTTAACGCGGGAAGTAAGTCGGAGGCTCTTAGAGTCATTAAGGAACTAG
Protein Sequence MKMGNLIFTCSSSSKANTSAKITDSSTSYPQPGQHISIRTFRELNPAPTSSPTSPRTGTFSTGENFRSMEDQQEEGNRQPTTLTPQHLTREVSRRLLESLRN