Hibiscus yellow vein leaf curl virus
Basic Information
Genomic Organization
JBrowse
Genome
CCCGAGACGGTTCACGGGTTTCGGTGCATGCTTTCTATCAAATATCTTCAGTTACTCTCTGAAGGCTATTCTCCGGATACGGTTGGTTACGATCTAATACGTGAATTAATTTCTATTTTGCGTTCCAGGAATTATGTCGAAGCGTCCTGCAGATATCGTAATTTCTACCCCCGCGTCGAAGGTGCGTCGTCGTCTGAACTTCGACAGCCCTTACTCAACCCGTGTAGCTGTCCCTACTGTCCGCGTCACAAAATCTCGAATGTGGGCGAACAGGCCCACGAATCGCAAGCCCAGAATGTACAGGATGTACAGAAGCCCTGATGTTCCAAAGGGTTGCGAGGGTCCATGTAAGGTTCAGTCATTTGAGTCTAGACACGACGTAGTCCATATAGGTAAGGTTATGTGTATTAGTGATGTCACCCGTGGTACAGGTCTGACCCATAGAGTTGGTAAGCGTTTCTGTGTTAAGTCAGTTTATGTTTTGGGTAAGATATGGATGGATGAAAATATTAAGACCAAGAATCATACGAATAATGTTATGTTCTTCCTTGTTCGTGATCGACGTCCGACCGGCACGCCCCAGGATTTTGGAGAAGTGTTCAACATGTTTGACAACGAGCCTAGCACTGCTACTGTAAAGAATGTGCATCGAGATCGTTACCAGGTTCTTAGGAAATGGTATGCAACCGTCACTGGTGGACAGTATGCTGCAAAGGAGCAGGCGTTGGTTAAGAAATTTATTAAGGTTAATAATTATGTTGTTTATAACCAGCAAGAGGCTGGGAAATACGAGAACCATTCTGAGAATGCCTTGATGTTGTATATGGCATGTACGCATGCCTCTAATCCTGTTTACGCTACTCTTAAGATTAGGATTTACTTCTACGATTCTGTAACGAACTGATATTAATAAAGATCGAATTTTATTTCTGAATTCATGTCTACATACATTGTTTGCTCTATCTTTCTCCATAATACATGATCTACAGCTCTTATAATTGCGTTAATTGAGATTACACCTAGATTGTTGAGATATTTGAGGACTTGTGTTTTGAATACCCTTAAGAAAAGACCAGTCTGAGGGCGTAAGGTCGTCCAGATTCGGTAGGTTAGAAAACACTTGTGCACTCCCAGAGCTTTCCGAAGGTTGTAGTTGAATTGGATCCTTATTGTTATGATGTCCATGTTCATCGTGAATGGACGGTCGGCGTGGTTGAGGATCTTGAAATAAAGGGGATTTGGAACCTCCCAGATATAGGCGCCATTCCATGCTTGAGCTGCAGTGATGGGTTCCCCTGTGCGTAAATCCATGGTCGTAGCAGTTGATTGACAGAAAATAAGAACAGCCGCATTCAAGATCTACTCTCTTCCTCCTGTTGCGTTTCTTCGCTTCCCTGTGCTGTACTTTGATTGGATCCTGAGTATAGTGGTCTTTCGAGGGTGACGAAGATCGCATTCTTGAGGGTCCAGTTTTTTAGTGCGGTGTTCTTTTCCTCGTCGAGGAATTCTTTATAGCTGCTGTTGGGACCAGGATTGCAAAGGAAGATTGTGGGTATCCCGCCTTTAATTTGAACTGGTTTTCCGTATTTTGTGTTGGACTGCCAGTCTCTTTGGGCCCCCATGAACTCTTTAAAGTGTTTGAGGAAATGCGGGTCGACGTCATCAATTACGTTGTACCAGGCGTCGTTACTGTATACTTTGGGACTCAGGTCCAGATGTCCGCACAAATAGTTATGTGGTCCCAATGACCTAGCCCACATCGTCTTTCCCGTACGACTATCTCCCTCAATTACTATACTCCGAGGTCTAAGGGGCCGCGCAGCGGCATCGACAACGTTATCCAACGCCCAAACTTCAAGTGCTTCTGGAACTTGATCGAACGAAGAAGAAGAAAAAGGAGAAACATAAGGAGCTGGTGGCTCCTGAAAGATCCTGTCTAGATTTGCATTTAAATTATGAAATTGTAGTACAAAATCTTTAGGAGCTAGTTCCTTAATGACTCTAAGAGCCTCTGACTTACTTCCCGCGTTAAGCGCTGCGGCGTAAGCGTCGTTGGCTGTCTGTTGTCCTCCTCTTGCTGATCTTCCATCGATCTGAAACTCTCCCCACTCGAGAGTGTCCCCGTCCTTGTCGATGTAGTCCTTGACATCTGAGCTTGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGATACCAGGTCGAAGAATCTGTTATTCGTGCAGATGAATTTGCCCTCGAACTGGATGAGCACATGGAGATGAGGGCTCCCATCTTCGTGTAACTCTCTGCAGACTTTGATGTATTTTTTATTCGAGGGTGTGTTGATGGCTTGAATTTGGGAAAGTGCTTCCTCTTTAGTGAGTGAGCACTGTGGATAAGTGAGGAAATAATTTTTGGCTTGTATTTTAAAACGCTTGGGGGGAGCCATTGACTTTGGTCAATTGGAGACAACTGATTTCATTTTACTCTGGCAATTGGAGACAGGAGACAATATATAGTGTCTCCAAATGGCATTATCGTAATTTGAGAAATCATTTCAAAATCCTCACGCTCCAAAAAGCGGCCATCCGTATAATATT
Gene Information
NCBI Accession
|
AWB51906.1
|
Location
|
119-466 |
Gene Name
|
V2 |
Protein Name
|
V2 protein |
Coding Region
|
ATGTGGGATCCACTCTTAAACGAGTTCCCCGAGACGGTTCACGGGTTTCGGTGCATGCTTTCTATCAAATATCTTCAGTTACTCTCTGAAGGCTATTCTCCGGATACGGTTGGTTACGATCTAATACGTGAATTAATTTCTATTTTGCGTTCCAGGAATTATGTCGAAGCGTCCTGCAGATATCGTAATTTCTACCCCCGCGTCGAAGGTGCGTCGTCGTCTGAACTTCGACAGCCCTTACTCAACCCGTGTAGCTGTCCCTACTGTCCGCGTCACAAAATCTCGAATGTGGGCGAACAGGCCCACGAATCGCAAGCCCAGAATGTACAGGATGTACAGAAGCCCTGA |
Protein Sequence
|
MWDPLLNEFPETVHGFRCMLSIKYLQLLSEGYSPDTVGYDLIRELISILRSRNYVEASCRYRNFYPRVEGASSSELRQPLLNPCSCPYCPRHKISNVGEQAHESQAQNVQDVQKP |
NCBI Accession
|
AWB51907.1
|
Location
|
279-1049 |
Gene Name
|
V1 |
Protein Name
|
V1 protein |
Coding Region
|
ATGTCGAAGCGTCCTGCAGATATCGTAATTTCTACCCCCGCGTCGAAGGTGCGTCGTCGTCTGAACTTCGACAGCCCTTACTCAACCCGTGTAGCTGTCCCTACTGTCCGCGTCACAAAATCTCGAATGTGGGCGAACAGGCCCACGAATCGCAAGCCCAGAATGTACAGGATGTACAGAAGCCCTGATGTTCCAAAGGGTTGCGAGGGTCCATGTAAGGTTCAGTCATTTGAGTCTAGACACGACGTAGTCCATATAGGTAAGGTTATGTGTATTAGTGATGTCACCCGTGGTACAGGTCTGACCCATAGAGTTGGTAAGCGTTTCTGTGTTAAGTCAGTTTATGTTTTGGGTAAGATATGGATGGATGAAAATATTAAGACCAAGAATCATACGAATAATGTTATGTTCTTCCTTGTTCGTGATCGACGTCCGACCGGCACGCCCCAGGATTTTGGAGAAGTGTTCAACATGTTTGACAACGAGCCTAGCACTGCTACTGTAAAGAATGTGCATCGAGATCGTTACCAGGTTCTTAGGAAATGGTATGCAACCGTCACTGGTGGACAGTATGCTGCAAAGGAGCAGGCGTTGGTTAAGAAATTTATTAAGGTTAATAATTATGTTGTTTATAACCAGCAAGAGGCTGGGAAATACGAGAACCATTCTGAGAATGCCTTGATGTTGTATATGGCATGTACGCATGCCTCTAATCCTGTTTACGCTACTCTTAAGATTAGGATTTACTTCTACGATTCTGTAACGAACTGA |
Protein Sequence
|
MSKRPADIVISTPASKVRRRLNFDSPYSTRVAVPTVRVTKSRMWANRPTNRKPRMYRMYRSPDVPKGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGTGLTHRVGKRFCVKSVYVLGKIWMDENIKTKNHTNNVMFFLVRDRRPTGTPQDFGEVFNMFDNEPSTATVKNVHRDRYQVLRKWYATVTGGQYAAKEQALVKKFIKVNNYVVYNQQEAGKYENHSENALMLYMACTHASNPVYATLKIRIYFYDSVTN |
NCBI Accession
|
AWB51908.1
|
Location
|
1052-1456 |
Gene Name
|
C3 |
Protein Name
|
C3 protein |
Coding Region
|
ATGGATTTACGCACAGGGGAACCCATCACTGCAGCTCAAGCATGGAATGGCGCCTATATCTGGGAGGTTCCAAATCCCCTTTATTTCAAGATCCTCAACCACGCCGACCGTCCATTCACGATGAACATGGACATCATAACAATAAGGATCCAATTCAACTACAACCTTCGGAAAGCTCTGGGAGTGCACAAGTGTTTTCTAACCTACCGAATCTGGACGACCTTACGCCCTCAGACTGGTCTTTTCTTAAGGGTATTCAAAACACAAGTCCTCAAATATCTCAACAATCTAGGTGTAATCTCAATTAACGCAATTATAAGAGCTGTAGATCATGTATTATGGAGAAAGATAGAGCAAACAATGTATGTAGACATGAATTCAGAAATAAAATTCGATCTTTATTAA |
Protein Sequence
|
MDLRTGEPITAAQAWNGAYIWEVPNPLYFKILNHADRPFTMNMDIITIRIQFNYNLRKALGVHKCFLTYRIWTTLRPQTGLFLRVFKTQVLKYLNNLGVISINAIIRAVDHVLWRKIEQTMYVDMNSEIKFDLY |
NCBI Accession
|
AWB51909.1
|
Location
|
1149-1601 |
Gene Name
|
C2 |
Protein Name
|
C2 protein |
Coding Region
|
ATGCGATCTTCGTCACCCTCGAAAGACCACTATACTCAGGATCCAATCAAAGTACAGCACAGGGAAGCGAAGAAACGCAACAGGAGGAAGAGAGTAGATCTTGAATGCGGCTGTTCTTATTTTCTGTCAATCAACTGCTACGACCATGGATTTACGCACAGGGGAACCCATCACTGCAGCTCAAGCATGGAATGGCGCCTATATCTGGGAGGTTCCAAATCCCCTTTATTTCAAGATCCTCAACCACGCCGACCGTCCATTCACGATGAACATGGACATCATAACAATAAGGATCCAATTCAACTACAACCTTCGGAAAGCTCTGGGAGTGCACAAGTGTTTTCTAACCTACCGAATCTGGACGACCTTACGCCCTCAGACTGGTCTTTTCTTAAGGGTATTCAAAACACAAGTCCTCAAATATCTCAACAATCTAGGTGTAATCTCAATTAA |
Protein Sequence
|
MRSSSPSKDHYTQDPIKVQHREAKKRNRRKRVDLECGCSYFLSINCYDHGFTHRGTHHCSSSMEWRLYLGGSKSPLFQDPQPRRPSIHDEHGHHNNKDPIQLQPSESSGSAQVFSNLPNLDDLTPSDWSFLKGIQNTSPQISQQSRCNLN |
NCBI Accession
|
AWB51910.1
|
Location
|
1498-2589 |
Gene Name
|
C1 |
Protein Name
|
C1 protein |
Coding Region
|
ATGGCTCCCCCCAAGCGTTTTAAAATACAAGCCAAAAATTATTTCCTCACTTATCCACAGTGCTCACTCACTAAAGAGGAAGCACTTTCCCAAATTCAAGCCATCAACACACCCTCGAATAAAAAATACATCAAAGTCTGCAGAGAGTTACACGAAGATGGGAGCCCTCATCTCCATGTGCTCATCCAGTTCGAGGGCAAATTCATCTGCACGAATAACAGATTCTTCGACCTGGTATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCAAGCTCAGATGTCAAGGACTACATCGACAAGGACGGGGACACTCTCGAGTGGGGAGAGTTTCAGATCGATGGAAGATCAGCAAGAGGAGGACAACAGACAGCCAACGACGCTTACGCCGCAGCGCTTAACGCGGGAAGTAAGTCAGAGGCTCTTAGAGTCATTAAGGAACTAGCTCCTAAAGATTTTGTACTACAATTTCATAATTTAAATGCAAATCTAGACAGGATCTTTCAGGAGCCACCAGCTCCTTATGTTTCTCCTTTTTCTTCTTCTTCGTTCGATCAAGTTCCAGAAGCACTTGAAGTTTGGGCGTTGGATAACGTTGTCGATGCCGCTGCGCGGCCCCTTAGACCTCGGAGTATAGTAATTGAGGGAGATAGTCGTACGGGAAAGACGATGTGGGCTAGGTCATTGGGACCACATAACTATTTGTGCGGACATCTGGACCTGAGTCCCAAAGTATACAGTAACGACGCCTGGTACAACGTAATTGATGACGTCGACCCGCATTTCCTCAAACACTTTAAAGAGTTCATGGGGGCCCAAAGAGACTGGCAGTCCAACACAAAATACGGAAAACCAGTTCAAATTAAAGGCGGGATACCCACAATCTTCCTTTGCAATCCTGGTCCCAACAGCAGCTATAAAGAATTCCTCGACGAGGAAAAGAACACCGCACTAAAAAACTGGACCCTCAAGAATGCGATCTTCGTCACCCTCGAAAGACCACTATACTCAGGATCCAATCAAAGTACAGCACAGGGAAGCGAAGAAACGCAACAGGAGGAAGAGAGTAGATCTTGA |
Protein Sequence
|
MAPPKRFKIQAKNYFLTYPQCSLTKEEALSQIQAINTPSNKKYIKVCRELHEDGSPHLHVLIQFEGKFICTNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKDYIDKDGDTLEWGEFQIDGRSARGGQQTANDAYAAALNAGSKSEALRVIKELAPKDFVLQFHNLNANLDRIFQEPPAPYVSPFSSSSFDQVPEALEVWALDNVVDAAARPLRPRSIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHFLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNTALKNWTLKNAIFVTLERPLYSGSNQSTAQGSEETQQEEESRS |
NCBI Accession
|
AWB51911.1
|
Location
|
2130-2432 |
Gene Name
|
C4 |
Protein Name
|
C4 protein |
Coding Region
|
ATGGGAGCCCTCATCTCCATGTGCTCATCCAGTTCGAGGGCAAATTCATCTGCACGAATAACAGATTCTTCGACCTGGTATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCAAGCTCAGATGTCAAGGACTACATCGACAAGGACGGGGACACTCTCGAGTGGGGAGAGTTTCAGATCGATGGAAGATCAGCAAGAGGAGGACAACAGACAGCCAACGACGCTTACGCCGCAGCGCTTAACGCGGGAAGTAAGTCAGAGGCTCTTAGAGTCATTAAGGAACTAG |
Protein Sequence
|
MGALISMCSSSSRANSSARITDSSTWYPQPGQHISIRTFRELNQAQMSRTTSTRTGTLSSGESFRSMEDQQEEDNRQPTTLTPQRLTREVSQRLLESLRN |