Eupatorium yellow vein mosaic virus
Basic Information
Genomic Organization
JBrowse
Genome
GTTGACTGGTCAATCGGTGTCTCTCAAAGTTCTATGCAATCGGTGTCTCTGGAGTCTTATTTATAGTAGAGACTCCAAATGGCATAAATGGTAATTATTGGGGGTAGGAGCGTGTCTTTTTGAATTTCAAATCGCCAAAGCGGCCATCCGTATAATATTACCGGATGGCCGCCGATTTTTTTTGTGGCCCCTCCCTGTCGGCTGATCCTGACCGTTCCTCAACGCTTAATTAAATACTGGTCCCCGTACGTCTTTAAGTATTTAATACTTGCGCCCTAAGCTTTATACGTGTATAATGTGGGATCCATTAGTTAACGAGTTCCCTGAAACCGTACACGGTTTTAGGTGTATGCTTGCAATTAAATACCTACAGCTTGTAGAATCTACGTATTCTCCAGATACGGTAGGTCGCGATCTTATTCGTGACCTAATACTTGTTATTCGTGCTAAGAATTATGTCGAAGCGTCCTGCAGATATAGTGATTTCCACACCCGCCTCCAAGGTACGTCGCCGTCTGAACTTCGACAGCCCGTATGTCAGCCGTGCGAATGCCCCCACTGTCCTCGTCACAAACAGAAGGAGATCATGGGCTCAACGGCCCATGTATCGGAAGCCCAGGATGTTCCGAATGTACAGAAGCCCTGATATCCCTAAGGGCTGTGAAGGCCCGTGTAAGGTCCAGTCGTTTGAGAAGAAAAATGATGTTGGTCATTCTGGTACTTTGTTATGTGTTTCTGATGTTACTCGTGGTAACGGTCTTACTCATCGTTCTGGCAAGAGATTTTGTATAAAATCTTGTTATATTATTGGTAAAATCTGGATGGATGAAAACATCAAGACTAAGAATCACACTAACACTGTCATGTTCTGGTTAGTTAGGGATAGACGTCCCCTTACAACCCCGTATGGATTTCAAGAGGCATTCAACATGTTTGATAACGAACCCAGTACAGCTACTATCAAGCAGGACCTAAGAGATCGTCTGCAGGTGTTACACAAGTTCCAGGCTACTGTCACTGGTGGACAGTATGCGTCCAAGGAACAGGCTGTGATCAAGAAGTTCTGGAAGATCAATCATCATGTTACTTACAATCATCAGGAGCAGGCTAAATATGAGAATCATACTGAGAACGCATTAATATTGTATATGGCTAGTACTCATGCCAGTAATCCCGTGTATGCAACTTTGAAAATCAGGTTCTATTTTTATGATTCTGTTCAGAATTAATAAATTTTATATTTTATATCATGAAATGTCCGTACATACAATGTTCCTTGTAATCTATTATACAATACATGATCAACTGCTCTAATTACATTATTAATTGAAATCACACCCAGACTATCTAAGTAGTTCATCACTTGTGTCCTAAAGACCCTCAAGAAATGCCATGTCTGAGGATGTAAGCGGCTCCAGATCTTGAAAATGAGGAAACACTTGTGCAAACCCAGCTGGGATCTGAGGTTGTGGTTGAACTGTATCTGTATTGTTATTACGTCTTGGTCCCTGTTGAATGATCGTTGATTGTGCCTCGTAATCTTGAAATAGAGGGGATTTGGAACCCTCCAGATATACTCTCCATTCTGTGCCTGAGCTGCAGTGATGAGTATCCCTGTGCGTGAATCCATAGTTTGCACAGTCAAGTCCCACGAAGATAGAACACCCGCAGTTTAGATCAATCCTCCTCCTGCGGTTCTTCTTCTTCGATTTGGCTATCCTGTGCTGGACTTTGATGGGAACCTGAATAGAGTGGGCTGTAGAGGGTGACGAAGGTTGCATTTTTAACTGCCCAGGCTTTTAATGCGGAATTCTTTTCTTCGTCCAGAAATTCCGTATATGAAGACGTTGGACCTGGATTGCAGAGGAAGATTGTTGGGATTCCACCTTTAATTTGAATTGGCTTCCCGTACTTCGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAATGCTTTAGATAGTGGGGGTCTACATCATCAACGACGTTGTACCATGCGTCGTTGCTGTAGATCTTCGGACTCAGATCCAGATGACCGCATAGGTAGTTATGTGGACCTAACGACCTAGCCCACATCGTTTTTCCTGTCCTACTGTCACCCTCTATGACAATACTAATCGGTCTCCATGGCCGCGCAGAAGACTTCACGTTTTCTGCAGCCCATTCCTCAAGTTCTTCAGGAACTTGATCAAATGAAGAACTAGAAAAAGGACAAACAAAAACCTCCAATGGAGGAGCAAAAATCCTATCTAAATTTGAATTTAAATTATGAAATTGTAAAACAAAATCTTTGGGAGCTTTCTCCCTTAATATATTGAGTGCCGATGACTTTGATCCTGAGTTGATTGCCTCGGCATATGCGTCGTTGGCAGATTGGCAACCTCCCCTAGCTGATCTTCCATCGACTTGGAAAACTCCAAAATCAAGGATGTCTCCGTCTTTCTCCATGTAGGACTTGACATCTGACGAGCTTTTAGCCGCCTGAATGTTCGGATGGAAATGTGCTGACCTACTTGGGGATACGAGGTCGAAGAATCGTTGATTTTTGCATTGGTATTTTCCTTCGAATTGGATGAGGATGTGGAGATGAGGGCTCCCATCTTCATGTAATTCACGGCAGATTCTTATGAATTTTTTTGATATCGGTGTTTGGAGTTGCTTGATTTGTGAGAGTGCTTCTCCTTTAGTAAGAGAGCAGTGTGGGTATGTGAGGAAATAATTCTTTGCATTTATTTTAAAACGATTTGGGGCAGGCAT
Gene Information
NCBI Accession
|
NP_619553.1
|
Location
|
296-646 |
Gene Name
|
V2 |
Protein Name
|
pre-coat protein |
Coding Region
|
ATGTGGGATCCATTAGTTAACGAGTTCCCTGAAACCGTACACGGTTTTAGGTGTATGCTTGCAATTAAATACCTACAGCTTGTAGAATCTACGTATTCTCCAGATACGGTAGGTCGCGATCTTATTCGTGACCTAATACTTGTTATTCGTGCTAAGAATTATGTCGAAGCGTCCTGCAGATATAGTGATTTCCACACCCGCCTCCAAGGTACGTCGCCGTCTGAACTTCGACAGCCCGTATGTCAGCCGTGCGAATGCCCCCACTGTCCTCGTCACAAACAGAAGGAGATCATGGGCTCAACGGCCCATGTATCGGAAGCCCAGGATGTTCCGAATGTACAGAAGCCCTGA |
Protein Sequence
|
MWDPLVNEFPETVHGFRCMLAIKYLQLVESTYSPDTVGRDLIRDLILVIRAKNYVEASCRYSDFHTRLQGTSPSELRQPVCQPCECPHCPRHKQKEIMGSTAHVSEAQDVPNVQKP |
NCBI Accession
|
NP_619554.1
|
Location
|
456-1229 |
Gene Name
|
V1 |
Protein Name
|
coat protein |
Coding Region
|
ATGTCGAAGCGTCCTGCAGATATAGTGATTTCCACACCCGCCTCCAAGGTACGTCGCCGTCTGAACTTCGACAGCCCGTATGTCAGCCGTGCGAATGCCCCCACTGTCCTCGTCACAAACAGAAGGAGATCATGGGCTCAACGGCCCATGTATCGGAAGCCCAGGATGTTCCGAATGTACAGAAGCCCTGATATCCCTAAGGGCTGTGAAGGCCCGTGTAAGGTCCAGTCGTTTGAGAAGAAAAATGATGTTGGTCATTCTGGTACTTTGTTATGTGTTTCTGATGTTACTCGTGGTAACGGTCTTACTCATCGTTCTGGCAAGAGATTTTGTATAAAATCTTGTTATATTATTGGTAAAATCTGGATGGATGAAAACATCAAGACTAAGAATCACACTAACACTGTCATGTTCTGGTTAGTTAGGGATAGACGTCCCCTTACAACCCCGTATGGATTTCAAGAGGCATTCAACATGTTTGATAACGAACCCAGTACAGCTACTATCAAGCAGGACCTAAGAGATCGTCTGCAGGTGTTACACAAGTTCCAGGCTACTGTCACTGGTGGACAGTATGCGTCCAAGGAACAGGCTGTGATCAAGAAGTTCTGGAAGATCAATCATCATGTTACTTACAATCATCAGGAGCAGGCTAAATATGAGAATCATACTGAGAACGCATTAATATTGTATATGGCTAGTACTCATGCCAGTAATCCCGTGTATGCAACTTTGAAAATCAGGTTCTATTTTTATGATTCTGTTCAGAATTAA |
Protein Sequence
|
MSKRPADIVISTPASKVRRRLNFDSPYVSRANAPTVLVTNRRRSWAQRPMYRKPRMFRMYRSPDIPKGCEGPCKVQSFEKKNDVGHSGTLLCVSDVTRGNGLTHRSGKRFCIKSCYIIGKIWMDENIKTKNHTNTVMFWLVRDRRPLTTPYGFQEAFNMFDNEPSTATIKQDLRDRLQVLHKFQATVTGGQYASKEQAVIKKFWKINHHVTYNHQEQAKYENHTENALILYMASTHASNPVYATLKIRFYFYDSVQN |
NCBI Accession
|
NP_619555.1
|
Location
|
1226-1630 |
Gene Name
|
C3 |
Protein Name
|
replication enhancer protein |
Coding Region
|
ATGGATTCACGCACAGGGATACTCATCACTGCAGCTCAGGCACAGAATGGAGAGTATATCTGGAGGGTTCCAAATCCCCTCTATTTCAAGATTACGAGGCACAATCAACGATCATTCAACAGGGACCAAGACGTAATAACAATACAGATACAGTTCAACCACAACCTCAGATCCCAGCTGGGTTTGCACAAGTGTTTCCTCATTTTCAAGATCTGGAGCCGCTTACATCCTCAGACATGGCATTTCTTGAGGGTCTTTAGGACACAAGTGATGAACTACTTAGATAGTCTGGGTGTGATTTCAATTAATAATGTAATTAGAGCAGTTGATCATGTATTGTATAATAGATTACAAGGAACATTGTATGTACGGACATTTCATGATATAAAATATAAAATTTATTAA |
Protein Sequence
|
MDSRTGILITAAQAQNGEYIWRVPNPLYFKITRHNQRSFNRDQDVITIQIQFNHNLRSQLGLHKCFLIFKIWSRLHPQTWHFLRVFRTQVMNYLDSLGVISINNVIRAVDHVLYNRLQGTLYVRTFHDIKYKIY |
NCBI Accession
|
NP_619556.1
|
Location
|
1371-1781 |
Gene Name
|
C2 |
Protein Name
|
transcriptional transactivator protein |
Coding Region
|
ATGCAACCTTCGTCACCCTCTACAGCCCACTCTATTCAGGTTCCCATCAAAGTCCAGCACAGGATAGCCAAATCGAAGAAGAAGAACCGCAGGAGGAGGATTGATCTAAACTGCGGGTGTTCTATCTTCGTGGGACTTGACTGTGCAAACTATGGATTCACGCACAGGGATACTCATCACTGCAGCTCAGGCACAGAATGGAGAGTATATCTGGAGGGTTCCAAATCCCCTCTATTTCAAGATTACGAGGCACAATCAACGATCATTCAACAGGGACCAAGACGTAATAACAATACAGATACAGTTCAACCACAACCTCAGATCCCAGCTGGGTTTGCACAAGTGTTTCCTCATTTTCAAGATCTGGAGCCGCTTACATCCTCAGACATGGCATTTCTTGAGGGTCTTTAG |
Protein Sequence
|
MQPSSPSTAHSIQVPIKVQHRIAKSKKKNRRRRIDLNCGCSIFVGLDCANYGFTHRDTHHCSSGTEWRVYLEGSKSPLFQDYEAQSTIIQQGPRRNNNTDTVQPQPQIPAGFAQVFPHFQDLEPLTSSDMAFLEGL |
NCBI Accession
|
NP_619557.1
|
Location
|
1678-2766 |
Gene Name
|
C1 |
Protein Name
|
replication-associated protein |
Coding Region
|
ATGCCTGCCCCAAATCGTTTTAAAATAAATGCAAAGAATTATTTCCTCACATACCCACACTGCTCTCTTACTAAAGGAGAAGCACTCTCACAAATCAAGCAACTCCAAACACCGATATCAAAAAAATTCATAAGAATCTGCCGTGAATTACATGAAGATGGGAGCCCTCATCTCCACATCCTCATCCAATTCGAAGGAAAATACCAATGCAAAAATCAACGATTCTTCGACCTCGTATCCCCAAGTAGGTCAGCACATTTCCATCCGAACATTCAGGCGGCTAAAAGCTCGTCAGATGTCAAGTCCTACATGGAGAAAGACGGAGACATCCTTGATTTTGGAGTTTTCCAAGTCGATGGAAGATCAGCTAGGGGAGGTTGCCAATCTGCCAACGACGCATATGCCGAGGCAATCAACTCAGGATCAAAGTCATCGGCACTCAATATATTAAGGGAGAAAGCTCCCAAAGATTTTGTTTTACAATTTCATAATTTAAATTCAAATTTAGATAGGATTTTTGCTCCTCCATTGGAGGTTTTTGTTTGTCCTTTTTCTAGTTCTTCATTTGATCAAGTTCCTGAAGAACTTGAGGAATGGGCTGCAGAAAACGTGAAGTCTTCTGCGCGGCCATGGAGACCGATTAGTATTGTCATAGAGGGTGACAGTAGGACAGGAAAAACGATGTGGGCTAGGTCGTTAGGTCCACATAACTACCTATGCGGTCATCTGGATCTGAGTCCGAAGATCTACAGCAACGACGCATGGTACAACGTCGTTGATGATGTAGACCCCCACTATCTAAAGCATTTTAAAGAATTCATGGGGGCCCAAAGGGACTGGCAAAGCAACACGAAGTACGGGAAGCCAATTCAAATTAAAGGTGGAATCCCAACAATCTTCCTCTGCAATCCAGGTCCAACGTCTTCATATACGGAATTTCTGGACGAAGAAAAGAATTCCGCATTAAAAGCCTGGGCAGTTAAAAATGCAACCTTCGTCACCCTCTACAGCCCACTCTATTCAGGTTCCCATCAAAGTCCAGCACAGGATAGCCAAATCGAAGAAGAAGAACCGCAGGAGGAGGATTGA |
Protein Sequence
|
MPAPNRFKINAKNYFLTYPHCSLTKGEALSQIKQLQTPISKKFIRICRELHEDGSPHLHILIQFEGKYQCKNQRFFDLVSPSRSAHFHPNIQAAKSSSDVKSYMEKDGDILDFGVFQVDGRSARGGCQSANDAYAEAINSGSKSSALNILREKAPKDFVLQFHNLNSNLDRIFAPPLEVFVCPFSSSSFDQVPEELEEWAAENVKSSARPWRPISIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKIYSNDAWYNVVDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPIQIKGGIPTIFLCNPGPTSSYTEFLDEEKNSALKAWAVKNATFVTLYSPLYSGSHQSPAQDSQIEEEEPQEED |
NCBI Accession
|
NP_619558.1
|
Location
|
2316-2615 |
Gene Name
|
C4 |
Protein Name
|
hypothetical protein |
Coding Region
|
ATGAAGATGGGAGCCCTCATCTCCACATCCTCATCCAATTCGAAGGAAAATACCAATGCAAAAATCAACGATTCTTCGACCTCGTATCCCCAAGTAGGTCAGCACATTTCCATCCGAACATTCAGGCGGCTAAAAGCTCGTCAGATGTCAAGTCCTACATGGAGAAAGACGGAGACATCCTTGATTTTGGAGTTTTCCAAGTCGATGGAAGATCAGCTAGGGGAGGTTGCCAATCTGCCAACGACGCATATGCCGAGGCAATCAACTCAGGATCAAAGTCATCGGCACTCAATATATTAA |
Protein Sequence
|
MKMGALISTSSSNSKENTNAKINDSSTSYPQVGQHISIRTFRRLKARQMSSPTWRKTETSLILEFSKSMEDQLGEVANLPTTHMPRQSTQDQSHRHSIY |